Wall clock time and date at job start Tue Mar 31 2020 20:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00516 * 2 1 4 4 H 1.48494 * 109.47475 * 240.00376 * 3 2 1 5 5 H 1.48506 * 109.46695 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47131 * 120.00118 * 3 2 1 7 7 C 1.39946 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99677 * 162.53938 * 7 2 1 9 9 C 1.41432 * 120.00172 * 342.53979 * 7 2 1 10 10 C 1.40788 * 120.17843 * 154.99439 * 9 7 2 11 11 C 1.37711 * 120.05338 * 179.97438 * 10 9 7 12 12 C 1.38359 * 120.41743 * 359.97438 * 11 10 9 13 13 C 1.39922 * 120.35421 * 359.97438 * 12 11 10 14 14 C 1.47771 * 120.02984 * 179.74756 * 13 12 11 15 15 O 1.21470 * 120.00066 * 179.97438 * 14 13 12 16 16 O 1.34702 * 120.00223 * 359.97438 * 14 13 12 17 17 C 1.45195 * 117.00144 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47472 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.38282 * 55.00001 * 18 17 16 20 20 C 1.52590 * 109.38535 * 295.21539 * 18 17 16 21 21 C 1.52631 * 110.61946 * 169.74942 * 20 18 17 22 22 C 1.53031 * 109.90036 * 70.13869 * 21 20 18 23 23 S 1.81676 * 108.99551 * 296.30997 * 22 21 20 24 24 O 1.42097 * 108.66065 * 299.96565 * 23 22 21 25 25 O 1.42104 * 108.66070 * 168.62813 * 23 22 21 26 26 C 1.53036 * 109.39099 * 174.78724 * 18 17 16 27 27 C 1.39083 * 119.94051 * 0.02562 * 13 12 11 28 28 H 0.97006 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.96944 * 359.95852 * 10 9 7 30 30 H 1.08001 * 119.79476 * 180.02562 * 11 10 9 31 31 H 1.07999 * 119.82408 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.47437 * 300.00089 * 17 16 14 33 33 H 1.08998 * 109.47482 * 60.00478 * 17 16 14 34 34 H 1.08998 * 109.23641 * 290.15194 * 20 18 17 35 35 H 1.09004 * 109.24419 * 49.54874 * 20 18 17 36 36 H 1.08996 * 109.45923 * 309.98034 * 21 20 18 37 37 H 1.09003 * 109.30621 * 190.19144 * 21 20 18 38 38 H 1.08994 * 109.55305 * 176.45492 * 22 21 20 39 39 H 1.09005 * 109.63080 * 56.20827 * 22 21 20 40 40 H 1.09000 * 109.55007 * 303.66394 * 26 18 17 41 41 H 1.09003 * 109.54642 * 63.94990 * 26 18 17 42 42 H 1.07999 * 120.21083 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0962 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0506 -1.2335 -0.2812 9 6 1.3495 -2.4088 0.3664 10 6 1.8196 -3.6488 -0.1065 11 6 1.1769 -4.8125 0.2529 12 6 0.0678 -4.7738 1.0793 13 6 -0.4134 -3.5510 1.5601 14 6 -1.6017 -3.5176 2.4377 15 8 -2.0187 -2.4558 2.8552 16 8 -2.2226 -4.6644 2.7749 17 6 -3.3838 -4.5558 3.6397 18 6 -3.9497 -5.9511 3.9114 19 1 -3.1632 -6.5879 4.3164 20 6 -4.4657 -6.5513 2.6068 21 6 -4.8025 -8.0286 2.7910 22 6 -6.0465 -8.1736 3.6703 23 16 -5.6805 -7.5190 5.3251 24 8 -4.6024 -8.2605 5.8791 25 8 -6.8976 -7.4108 6.0506 26 6 -5.0917 -5.8477 4.9249 27 6 0.2244 -2.3667 1.2065 28 1 -0.4850 0.8401 0.0004 29 1 2.6847 -3.6873 -0.7518 30 1 1.5413 -5.7615 -0.1120 31 1 -0.4286 -5.6923 1.3554 32 1 -3.0928 -4.0923 4.5823 33 1 -4.1433 -3.9439 3.1531 34 1 -5.3604 -6.0135 2.2932 35 1 -3.6996 -6.4519 1.8379 36 1 -3.9627 -8.5360 3.2656 37 1 -4.9936 -8.4787 1.8168 38 1 -6.3187 -9.2262 3.7465 39 1 -6.8725 -7.6140 3.2313 40 1 -4.7320 -5.3609 5.8314 41 1 -5.9081 -5.2662 4.4964 42 1 -0.1436 -1.4204 1.5747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791732768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:18 Heat of formation + Delta-G solvation = -153.354640 kcal Electronic energy + Delta-G solvation = -26470.189559 eV Core-core repulsion = 22506.682753 eV Total energy + Delta-G solvation = -3963.506806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.97871 -38.21286 -37.40162 -37.07551 -36.35432 -35.63666 -33.81282 -32.89457 -30.42667 -29.57258 -28.18496 -27.00117 -25.39773 -23.35816 -22.61779 -21.06470 -20.81659 -19.92960 -19.15878 -17.92103 -17.24666 -16.84489 -16.33072 -16.13189 -16.01556 -15.85114 -15.31703 -15.02004 -14.72164 -14.70627 -14.03623 -13.54922 -13.46577 -13.35673 -13.05055 -12.96043 -12.70874 -12.47421 -12.43155 -12.34284 -11.84411 -11.77281 -11.71765 -11.49762 -11.26469 -11.19845 -11.14912 -11.01521 -10.82625 -10.58712 -10.47817 -10.29706 -10.25557 -9.79488 -9.55616 -9.29295 -7.81259 -7.61793 -6.88592 -4.49838 -0.34650 1.90329 2.26656 2.73196 3.01829 3.02767 3.04196 3.09988 3.30284 3.52243 3.60675 3.85627 4.08782 4.11515 4.29010 4.36068 4.51446 4.52930 4.66570 4.88854 5.05432 5.12692 5.22077 5.26726 5.38192 5.47484 5.55253 5.56297 5.66625 5.87866 5.90791 6.07188 6.33016 6.56361 6.84202 6.87978 6.91496 7.10922 7.24332 7.61337 7.68453 7.84494 8.03983 8.37896 8.46087 8.70779 8.72817 10.06853 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.002297 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.704157 B =12187.600100 C =12870.123779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.194 4.194 13 C -0.115 4.115 14 C 0.513 3.487 15 O -0.517 6.517 16 O -0.354 6.354 17 C 0.075 3.925 18 C -0.076 4.076 19 H 0.105 0.895 20 C -0.140 4.140 21 C -0.109 4.109 22 C -0.603 4.603 23 S 2.420 3.580 24 O -0.934 6.934 25 O -0.944 6.944 26 C -0.603 4.603 27 C -0.089 4.089 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 -11.821 4.865 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.122 4.122 12 C -0.214 4.214 13 C -0.117 4.117 14 C 0.360 3.640 15 O -0.407 6.407 16 O -0.272 6.272 17 C 0.000 4.000 18 C -0.095 4.095 19 H 0.123 0.877 20 C -0.178 4.178 21 C -0.147 4.147 22 C -0.732 4.732 23 S 2.603 3.397 24 O -0.931 6.931 25 O -0.942 6.942 26 C -0.731 4.731 27 C -0.109 4.109 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.511 -11.758 5.838 17.460 hybrid contribution 0.087 1.332 -0.704 1.509 sum -11.425 -10.426 5.134 16.296 Atomic orbital electron populations 1.69766 1.07617 1.29946 1.33863 1.25968 0.94793 1.01617 0.92201 0.86297 0.80096 0.79941 0.80051 1.18893 1.20222 1.18684 1.19547 0.98131 0.90888 1.40332 0.89939 1.17539 0.91135 0.92623 0.89368 1.21197 1.03182 0.92761 1.04916 1.20514 0.96136 0.96919 0.98602 1.20549 1.00318 0.95291 1.05213 1.18818 0.94899 0.95952 1.01997 1.21890 0.83034 0.80761 0.78311 1.90770 1.65420 1.31387 1.53116 1.86558 1.41582 1.36314 1.62739 1.22831 0.86858 0.95934 0.94410 1.20861 0.95937 0.98115 0.94556 0.87655 1.21830 1.03348 0.94565 0.98009 1.21301 0.94707 0.97590 1.01147 1.30242 1.07965 1.13225 1.21806 1.07953 0.75532 0.78260 0.77990 1.93603 1.55236 1.68848 1.75414 1.93602 1.45414 1.86233 1.68902 1.30336 1.09004 1.24484 1.09307 1.21649 0.96566 0.95964 0.96704 0.90347 0.88323 0.88504 0.87828 0.91029 0.91007 0.90581 0.88139 0.89416 0.89192 0.84813 0.84861 0.84285 0.84426 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.16 10.97 55.55 0.61 -19.55 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.68 9.05 -37.73 -0.34 -12.02 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.45 5.57 -106.87 -0.59 1.85 16 10 C -0.20 -4.59 9.78 -38.81 -0.38 -4.97 16 11 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 12 C -0.19 -4.05 9.62 -38.91 -0.37 -4.43 16 13 C -0.12 -2.66 5.87 -105.06 -0.62 -3.28 16 14 C 0.51 10.87 7.90 34.63 0.27 11.15 16 15 O -0.52 -12.08 16.12 -19.24 -0.31 -12.39 16 16 O -0.35 -5.95 8.81 -40.50 -0.36 -6.31 16 17 C 0.08 0.96 4.84 37.16 0.18 1.14 16 18 C -0.08 -0.68 2.26 -90.81 -0.21 -0.89 16 19 H 0.11 0.96 8.01 -51.93 -0.42 0.54 16 20 C -0.14 -1.08 4.91 -27.13 -0.13 -1.21 16 21 C -0.11 -0.67 5.73 -26.90 -0.15 -0.82 16 22 C -0.60 -3.10 6.34 37.17 0.24 -2.86 16 23 S 2.42 18.84 5.31 -107.50 -0.57 18.27 16 24 O -0.93 -10.64 17.94 -57.81 -1.04 -11.68 16 25 O -0.94 -10.51 18.10 -57.81 -1.05 -11.56 16 26 C -0.60 -4.09 5.62 37.18 0.21 -3.88 16 27 C -0.09 -2.30 8.24 -38.42 -0.32 -2.61 16 28 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 29 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.89 7.59 -52.49 -0.40 1.50 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.10 0.93 7.53 -51.93 -0.39 0.53 16 36 H 0.09 0.56 8.01 -51.93 -0.42 0.14 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.13 3.71 5.77 -52.49 -0.30 3.40 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -33.41 363.34 -10.67 -44.08 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.70 Total: 4.14 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.70 Total: -23.67 kcal Atomic # 7 Polarization: -20.16 SS G_CDS: 0.61 Total: -19.55 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -2.75 Total: -41.94 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: 18.84 SS G_CDS: -0.57 Total: 18.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.41 -10.67 -44.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791732768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.272 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds