Wall clock time and date at job start Tue Mar 31 2020 20:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00516 * 2 1 4 4 H 1.48494 * 109.47475 * 240.00376 * 3 2 1 5 5 H 1.48506 * 109.46695 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47131 * 120.00118 * 3 2 1 7 7 C 1.39946 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99677 * 162.53938 * 7 2 1 9 9 C 1.41432 * 120.00172 * 342.53979 * 7 2 1 10 10 C 1.40788 * 120.17843 * 154.99439 * 9 7 2 11 11 C 1.37711 * 120.05338 * 179.97438 * 10 9 7 12 12 C 1.38359 * 120.41743 * 359.97438 * 11 10 9 13 13 C 1.39922 * 120.35421 * 359.97438 * 12 11 10 14 14 C 1.47771 * 120.02984 * 179.74756 * 13 12 11 15 15 O 1.21470 * 120.00066 * 179.97438 * 14 13 12 16 16 O 1.34702 * 120.00223 * 359.97438 * 14 13 12 17 17 C 1.45195 * 117.00144 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47472 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.38282 * 55.00001 * 18 17 16 20 20 C 1.52590 * 109.38535 * 295.21539 * 18 17 16 21 21 C 1.52631 * 110.61946 * 169.74942 * 20 18 17 22 22 C 1.53031 * 109.90036 * 70.13869 * 21 20 18 23 23 S 1.81676 * 108.99551 * 296.30997 * 22 21 20 24 24 O 1.42097 * 108.66065 * 299.96565 * 23 22 21 25 25 O 1.42104 * 108.66070 * 168.62813 * 23 22 21 26 26 C 1.53036 * 109.39099 * 174.78724 * 18 17 16 27 27 C 1.39083 * 119.94051 * 0.02562 * 13 12 11 28 28 H 0.97006 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.96944 * 359.95852 * 10 9 7 30 30 H 1.08001 * 119.79476 * 180.02562 * 11 10 9 31 31 H 1.07999 * 119.82408 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.47437 * 300.00089 * 17 16 14 33 33 H 1.08998 * 109.47482 * 60.00478 * 17 16 14 34 34 H 1.08998 * 109.23641 * 290.15194 * 20 18 17 35 35 H 1.09004 * 109.24419 * 49.54874 * 20 18 17 36 36 H 1.08996 * 109.45923 * 309.98034 * 21 20 18 37 37 H 1.09003 * 109.30621 * 190.19144 * 21 20 18 38 38 H 1.08994 * 109.55305 * 176.45492 * 22 21 20 39 39 H 1.09005 * 109.63080 * 56.20827 * 22 21 20 40 40 H 1.09000 * 109.55007 * 303.66394 * 26 18 17 41 41 H 1.09003 * 109.54642 * 63.94990 * 26 18 17 42 42 H 1.07999 * 120.21083 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0962 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0506 -1.2335 -0.2812 9 6 1.3495 -2.4088 0.3664 10 6 1.8196 -3.6488 -0.1065 11 6 1.1769 -4.8125 0.2529 12 6 0.0678 -4.7738 1.0793 13 6 -0.4134 -3.5510 1.5601 14 6 -1.6017 -3.5176 2.4377 15 8 -2.0187 -2.4558 2.8552 16 8 -2.2226 -4.6644 2.7749 17 6 -3.3838 -4.5558 3.6397 18 6 -3.9497 -5.9511 3.9114 19 1 -3.1632 -6.5879 4.3164 20 6 -4.4657 -6.5513 2.6068 21 6 -4.8025 -8.0286 2.7910 22 6 -6.0465 -8.1736 3.6703 23 16 -5.6805 -7.5190 5.3251 24 8 -4.6024 -8.2605 5.8791 25 8 -6.8976 -7.4108 6.0506 26 6 -5.0917 -5.8477 4.9249 27 6 0.2244 -2.3667 1.2065 28 1 -0.4850 0.8401 0.0004 29 1 2.6847 -3.6873 -0.7518 30 1 1.5413 -5.7615 -0.1120 31 1 -0.4286 -5.6923 1.3554 32 1 -3.0928 -4.0923 4.5823 33 1 -4.1433 -3.9439 3.1531 34 1 -5.3604 -6.0135 2.2932 35 1 -3.6996 -6.4519 1.8379 36 1 -3.9627 -8.5360 3.2656 37 1 -4.9936 -8.4787 1.8168 38 1 -6.3187 -9.2262 3.7465 39 1 -6.8725 -7.6140 3.2313 40 1 -4.7320 -5.3609 5.8314 41 1 -5.9081 -5.2662 4.4964 42 1 -0.1436 -1.4204 1.5747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791732768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:17 Heat of formation + Delta-G solvation = -174.338713 kcal Electronic energy + Delta-G solvation = -26471.099496 eV Core-core repulsion = 22506.682753 eV Total energy + Delta-G solvation = -3964.416743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49619 -39.37927 -38.72405 -37.95256 -37.10062 -36.98763 -35.60970 -33.56908 -32.17470 -31.35461 -28.84696 -27.93093 -27.17617 -24.81073 -23.39306 -22.84181 -21.56577 -21.52770 -19.85266 -19.59883 -18.31907 -17.92463 -17.51409 -17.40058 -17.20578 -16.67415 -16.61670 -16.41234 -15.98896 -15.51637 -15.22736 -15.12787 -14.59764 -14.35870 -14.17356 -14.04352 -13.87563 -13.67804 -13.49359 -13.22699 -13.10038 -12.98757 -12.83031 -12.56953 -12.54673 -12.39754 -12.26535 -12.22374 -12.05103 -11.83812 -11.71647 -11.55122 -11.51109 -11.27714 -11.08466 -10.97688 -9.60874 -9.43283 -8.68782 -6.39793 -0.94293 0.13953 0.97853 1.37488 1.46938 1.50504 1.55345 1.80784 1.83632 2.18815 2.71336 2.72671 2.96843 3.43746 3.50653 3.63289 3.64866 3.79319 3.92899 4.04294 4.10003 4.24080 4.31346 4.43438 4.50207 4.59032 4.64461 4.66595 4.77264 4.83855 4.93377 5.05435 5.08744 5.14166 5.25556 5.27524 5.28653 5.36419 5.45840 5.82506 5.90244 6.01615 6.23968 6.53332 6.81748 6.87066 6.89458 8.28637 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.002297 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.704157 B =12187.600100 C =12870.123779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.496 4.496 8 H 0.086 0.914 9 C 0.065 3.935 10 C -0.203 4.203 11 C -0.100 4.100 12 C -0.177 4.177 13 C -0.129 4.129 14 C 0.517 3.483 15 O -0.548 6.548 16 O -0.343 6.343 17 C 0.064 3.936 18 C -0.072 4.072 19 H 0.102 0.898 20 C -0.144 4.144 21 C -0.110 4.110 22 C -0.582 4.582 23 S 2.425 3.575 24 O -0.977 6.977 25 O -0.982 6.982 26 C -0.599 4.599 27 C -0.124 4.124 28 H 0.288 0.712 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -13.698 3.977 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.105 0.895 9 C 0.063 3.937 10 C -0.223 4.223 11 C -0.118 4.118 12 C -0.196 4.196 13 C -0.130 4.130 14 C 0.365 3.635 15 O -0.440 6.440 16 O -0.260 6.260 17 C -0.010 4.010 18 C -0.091 4.091 19 H 0.120 0.880 20 C -0.181 4.181 21 C -0.148 4.148 22 C -0.715 4.715 23 S 2.613 3.387 24 O -0.975 6.975 25 O -0.979 6.979 26 C -0.728 4.728 27 C -0.144 4.144 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.198 -13.677 4.986 18.993 hybrid contribution 0.231 1.706 -0.434 1.775 sum -11.968 -11.972 4.552 17.529 Atomic orbital electron populations 1.69858 1.09184 1.30766 1.35407 1.26830 0.95427 1.04889 0.91271 0.85243 0.78719 0.75492 0.80275 1.17656 1.19705 1.18561 1.19833 0.98553 0.91968 1.42139 0.89543 1.17897 0.91732 0.94053 0.90037 1.21512 1.03551 0.92654 1.04586 1.20976 0.95309 0.97968 0.97505 1.20982 0.99763 0.95481 1.03406 1.19087 0.95546 0.96095 1.02315 1.21638 0.82772 0.81323 0.77802 1.90750 1.66239 1.32782 1.54221 1.86514 1.42659 1.33814 1.63004 1.23270 0.85466 0.98782 0.93505 1.20868 0.96584 0.95553 0.96099 0.87996 1.21883 1.03768 0.95969 0.96473 1.21328 0.94915 0.96369 1.02213 1.30089 1.08556 1.14657 1.18163 1.07560 0.74043 0.78055 0.79082 1.93546 1.56440 1.69983 1.77503 1.93555 1.46419 1.86758 1.71174 1.30298 1.09013 1.24332 1.09145 1.21455 0.98263 0.95900 0.98786 0.90187 0.86818 0.84097 0.84512 0.91309 0.90422 0.88553 0.89627 0.89885 0.87254 0.82898 0.81982 0.83797 0.81760 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.40 10.97 21.83 0.24 -44.16 16 2 C 0.03 1.56 5.14 85.26 0.44 1.99 16 3 Si 0.98 38.26 29.59 68.60 2.03 40.29 16 4 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.50 -26.03 9.05 23.47 0.21 -25.82 16 8 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.06 3.41 5.57 -21.32 -0.12 3.29 16 10 C -0.20 -9.14 9.78 22.77 0.22 -8.91 16 11 C -0.10 -3.85 10.01 22.17 0.22 -3.63 16 12 C -0.18 -7.01 9.62 22.71 0.22 -6.79 16 13 C -0.13 -6.00 5.87 -20.15 -0.12 -6.12 16 14 C 0.52 22.10 7.90 70.34 0.56 22.66 16 15 O -0.55 -26.41 16.12 19.93 0.32 -26.09 16 16 O -0.34 -11.19 8.81 -56.11 -0.49 -11.69 16 17 C 0.06 1.57 4.84 71.98 0.35 1.92 16 18 C -0.07 -1.16 2.26 -10.92 -0.02 -1.18 16 19 H 0.10 1.72 8.01 -2.39 -0.02 1.70 16 20 C -0.14 -1.78 4.91 30.34 0.15 -1.63 16 21 C -0.11 -0.96 5.73 30.48 0.17 -0.78 16 22 C -0.58 -3.83 6.34 71.99 0.46 -3.37 16 23 S 2.43 34.00 5.31 -56.49 -0.30 33.70 16 24 O -0.98 -21.80 17.94 -127.40 -2.29 -24.09 16 25 O -0.98 -20.85 18.10 -127.40 -2.31 -23.15 16 26 C -0.60 -6.95 5.62 71.99 0.40 -6.54 16 27 C -0.12 -6.65 8.24 23.02 0.19 -6.46 16 28 H 0.29 14.23 8.30 -92.70 -0.77 13.46 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.14 4.48 7.59 -2.91 -0.02 4.46 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 35 H 0.09 1.36 7.53 -2.38 -0.02 1.34 16 36 H 0.08 0.84 8.01 -2.39 -0.02 0.82 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 6.14 5.77 -2.91 -0.02 6.12 16 Total: -1.00 -76.36 363.34 1.57 -74.79 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.03 Total: 21.77 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 3.33 Total: -41.37 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.24 Total: -44.16 kcal Atomic # 8 Polarization: -80.25 SS G_CDS: -4.76 Total: -85.01 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 16 Polarization: 34.00 SS G_CDS: -0.30 Total: 33.70 kcal Total: -76.36 1.57 -74.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791732768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.546 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds