Wall clock time and date at job start Tue Mar 31 2020 20:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86803 * 119.99790 * 2 1 4 4 H 1.48507 * 109.47210 * 83.30938 * 3 2 1 5 5 H 1.48498 * 109.46968 * 203.30833 * 3 2 1 6 6 H 1.48494 * 109.47316 * 323.30880 * 3 2 1 7 7 C 1.40237 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 23.93333 * 7 2 1 9 9 C 1.41091 * 119.99947 * 203.92963 * 7 2 1 10 10 C 1.40904 * 120.10104 * 26.43817 * 9 7 2 11 11 C 1.36298 * 119.89872 * 179.73529 * 10 9 7 12 12 C 1.40068 * 120.10140 * 0.54440 * 11 10 9 13 13 C 1.47508 * 119.90091 * 179.71100 * 12 11 10 14 14 O 1.21507 * 120.00135 * 180.02562 * 13 12 11 15 15 O 1.34774 * 120.00063 * 0.02562 * 13 12 11 16 16 C 1.45195 * 117.00240 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47171 * 179.97438 * 16 15 13 18 18 H 1.08991 * 109.38565 * 55.20912 * 17 16 15 19 19 C 1.52589 * 109.38483 * 175.00339 * 17 16 15 20 20 C 1.52588 * 110.64237 * 190.14394 * 19 17 16 21 21 C 1.53034 * 109.98442 * 290.00895 * 20 19 17 22 22 S 1.81670 * 108.99865 * 63.65147 * 21 20 19 23 23 O 1.42110 * 108.66447 * 60.02675 * 22 21 20 24 24 O 1.42095 * 108.66415 * 191.36774 * 22 21 20 25 25 C 1.53038 * 109.38512 * 295.52316 * 17 16 15 26 26 C 1.40066 * 120.19795 * 359.73301 * 12 11 10 27 27 C 1.36302 * 120.10318 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00034 * 173.18723 * 1 2 3 29 29 H 1.08002 * 120.04481 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.94850 * 180.27287 * 11 10 9 31 31 H 1.09001 * 109.47115 * 299.99988 * 16 15 13 32 32 H 1.09004 * 109.47132 * 59.99854 * 16 15 13 33 33 H 1.09000 * 109.23951 * 310.44306 * 19 17 16 34 34 H 1.08994 * 109.24365 * 69.88018 * 19 17 16 35 35 H 1.08999 * 109.38529 * 50.17207 * 20 19 17 36 36 H 1.09007 * 109.38175 * 169.85269 * 20 19 17 37 37 H 1.09007 * 109.54725 * 183.50521 * 21 20 19 38 38 H 1.08992 * 109.55061 * 303.69593 * 21 20 19 39 39 H 1.08999 * 109.55297 * 296.04938 * 25 17 16 40 40 H 1.09005 * 109.54974 * 56.33939 * 25 17 16 41 41 H 1.08001 * 119.95089 * 180.02562 * 26 12 11 42 42 H 1.08004 * 120.05256 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3466 2.1281 1.3906 5 1 3.6013 1.4036 -0.5540 6 1 1.5156 2.6078 -0.8365 7 6 2.0076 -1.2145 -0.0005 8 1 1.5372 -2.1094 -0.3804 9 6 3.3275 -1.2672 0.4951 10 6 3.7573 -0.3359 1.4612 11 6 5.0317 -0.3940 1.9411 12 6 5.9171 -1.3703 1.4670 13 6 7.2972 -1.4251 1.9847 14 8 8.0669 -2.2711 1.5744 15 8 7.7045 -0.5369 2.9130 16 6 9.0755 -0.6506 3.3773 17 6 9.3524 0.4344 4.4199 18 1 8.6171 0.3623 5.2211 19 6 10.7512 0.2371 4.9969 20 6 10.9657 1.1399 6.2082 21 6 11.0545 2.6011 5.7623 22 16 9.4669 3.0932 5.0288 23 8 8.4477 2.9428 6.0076 24 8 9.6337 4.3480 4.3834 25 6 9.2483 1.8113 3.7601 26 6 5.4960 -2.2945 0.5024 27 6 4.2216 -2.2477 0.0211 28 1 -0.4850 -0.8341 -0.0997 29 1 3.0765 0.4198 1.8242 30 1 5.3607 0.3167 2.6848 31 1 9.2271 -1.6326 3.8253 32 1 9.7559 -0.5265 2.5348 33 1 10.8719 -0.8034 5.2984 34 1 11.4916 0.4782 4.2343 35 1 10.1309 1.0225 6.8993 36 1 11.8913 0.8579 6.7102 37 1 11.2695 3.2330 6.6241 38 1 11.8484 2.7094 5.0235 39 1 10.0250 1.9123 3.0021 40 1 8.2678 1.9204 3.2965 41 1 6.1819 -3.0459 0.1399 42 1 3.8979 -2.9604 -0.7230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792068560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:07 Heat of formation + Delta-G solvation = -161.047599 kcal Electronic energy + Delta-G solvation = -26599.656209 eV Core-core repulsion = 22635.815812 eV Total energy + Delta-G solvation = -3963.840397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -39.91652 -38.29178 -37.61121 -37.05462 -36.23979 -35.67361 -34.08082 -32.78539 -30.75545 -30.02414 -28.32232 -27.19596 -25.65180 -23.07201 -21.98931 -21.30654 -20.95275 -20.12934 -19.12980 -18.42698 -17.31927 -17.04800 -16.87902 -16.34203 -16.02935 -15.76989 -15.28759 -14.78184 -14.64065 -14.44096 -14.07729 -13.96829 -13.68970 -13.37427 -13.15121 -12.96281 -12.60610 -12.44525 -12.35955 -12.23682 -12.09721 -12.00522 -11.83234 -11.72987 -11.49991 -11.28767 -11.18919 -10.91816 -10.88151 -10.43569 -10.34976 -10.31799 -10.25275 -9.70298 -9.59336 -9.25702 -8.09260 -8.00540 -7.59452 -4.90304 -0.25597 1.82425 2.39353 2.64868 3.01261 3.08301 3.15312 3.38983 3.39483 3.46571 3.57919 3.79369 4.07012 4.14685 4.28569 4.32394 4.34807 4.48193 4.71857 4.85797 5.04662 5.12371 5.14300 5.20401 5.34800 5.35651 5.39377 5.46317 5.60809 5.75222 5.84110 5.93484 5.97128 6.40435 6.62398 6.69647 6.86554 7.08635 7.15967 7.32817 7.43381 7.56318 7.70244 8.07978 8.23670 8.41408 8.52805 9.59634 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002946 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.772191 B = 9503.710762 C =11006.292786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.043 3.957 3 Si 1.071 2.929 4 H -0.270 1.270 5 H -0.257 1.257 6 H -0.284 1.284 7 C -0.481 4.481 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.257 4.257 11 C -0.013 4.013 12 C -0.282 4.282 13 C 0.517 3.483 14 O -0.550 6.550 15 O -0.360 6.360 16 C 0.078 3.922 17 C -0.077 4.077 18 H 0.105 0.895 19 C -0.136 4.136 20 C -0.107 4.107 21 C -0.608 4.608 22 S 2.417 3.583 23 O -0.933 6.933 24 O -0.944 6.944 25 C -0.599 4.599 26 C -0.011 4.011 27 C -0.230 4.230 28 H 0.293 0.707 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.106 0.894 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.073 3.805 9.748 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.181 4.181 3 Si 0.894 3.106 4 H -0.196 1.196 5 H -0.181 1.181 6 H -0.211 1.211 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.109 3.891 10 C -0.276 4.276 11 C -0.032 4.032 12 C -0.284 4.284 13 C 0.369 3.631 14 O -0.443 6.443 15 O -0.278 6.278 16 C 0.003 3.997 17 C -0.096 4.096 18 H 0.123 0.877 19 C -0.173 4.173 20 C -0.146 4.146 21 C -0.737 4.737 22 S 2.599 3.401 23 O -0.930 6.930 24 O -0.941 6.941 25 C -0.728 4.728 26 C -0.030 4.030 27 C -0.249 4.249 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.124 0.876 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.430 5.896 9.938 21.753 hybrid contribution 0.674 -2.501 -0.383 2.619 sum 19.104 3.394 9.555 21.629 Atomic orbital electron populations 1.70454 1.08372 1.34172 1.27061 1.27633 0.95463 1.05126 0.89921 0.83614 0.76194 0.72322 0.78428 1.19606 1.18146 1.21142 1.21007 0.97859 0.97671 1.34187 0.89753 1.17901 0.92258 0.90308 0.88643 1.20761 0.96933 1.05504 1.04353 1.20603 0.92785 0.94427 0.95365 1.18166 0.90574 1.07951 1.11743 1.21463 0.88737 0.77427 0.75455 1.90709 1.56294 1.37784 1.59562 1.86555 1.30201 1.55593 1.55494 1.22775 0.81998 0.98219 0.96713 1.20936 0.98699 0.91625 0.98343 0.87707 1.21712 0.95639 1.02123 0.97853 1.21242 1.05125 0.89782 0.98408 1.30284 1.23117 1.06740 1.13521 1.08094 0.77811 0.76681 0.77534 1.93608 1.53942 1.86788 1.58642 1.93600 1.86410 1.38185 1.75894 1.30335 1.13186 1.12302 1.17010 1.20405 0.95396 0.94690 0.92491 1.20687 0.93570 1.04930 1.05725 0.89484 0.87374 0.87350 0.90946 0.91269 0.89114 0.90218 0.89423 0.89276 0.84887 0.84925 0.84801 0.83477 0.87567 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.16 13.64 55.56 0.76 -18.40 16 2 C 0.04 1.03 5.33 -17.31 -0.09 0.94 16 3 Si 1.07 22.51 25.01 -169.99 -4.25 18.26 16 4 H -0.27 -5.42 6.68 56.52 0.38 -5.04 16 5 H -0.26 -5.43 7.02 56.52 0.40 -5.03 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.48 -11.91 9.39 -37.75 -0.35 -12.27 16 8 H 0.08 2.12 8.06 -52.49 -0.42 1.69 16 9 C 0.11 2.71 5.15 -106.80 -0.55 2.16 16 10 C -0.26 -5.88 7.30 -39.27 -0.29 -6.17 16 11 C -0.01 -0.28 9.55 -39.59 -0.38 -0.66 16 12 C -0.28 -6.10 5.89 -104.75 -0.62 -6.72 16 13 C 0.52 10.33 7.89 34.51 0.27 10.61 16 14 O -0.55 -11.73 16.11 -19.27 -0.31 -12.05 16 15 O -0.36 -5.97 8.90 -40.70 -0.36 -6.33 16 16 C 0.08 0.94 4.83 37.16 0.18 1.12 16 17 C -0.08 -0.66 2.26 -90.81 -0.21 -0.86 16 18 H 0.10 0.93 8.01 -51.93 -0.42 0.51 16 19 C -0.14 -0.72 4.93 -27.15 -0.13 -0.85 16 20 C -0.11 -0.50 5.73 -26.92 -0.15 -0.65 16 21 C -0.61 -2.94 6.35 37.18 0.24 -2.70 16 22 S 2.42 21.20 5.31 -107.50 -0.57 20.63 16 23 O -0.93 -11.65 17.94 -57.81 -1.04 -12.69 16 24 O -0.94 -11.77 18.10 -57.81 -1.05 -12.81 16 25 C -0.60 -5.03 5.56 37.18 0.21 -4.82 16 26 C -0.01 -0.24 9.52 -39.59 -0.38 -0.62 16 27 C -0.23 -5.21 9.73 -39.27 -0.38 -5.59 16 28 H 0.29 6.92 8.73 -40.82 -0.36 6.56 16 29 H 0.11 2.41 4.72 -52.49 -0.25 2.17 16 30 H 0.11 2.04 7.59 -52.49 -0.40 1.65 16 31 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.41 8.06 -51.93 -0.42 -0.01 16 34 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 35 H 0.09 0.44 8.01 -51.93 -0.42 0.02 16 36 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 37 H 0.13 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.15 1.45 7.71 -51.92 -0.40 1.05 16 41 H 0.11 2.18 7.63 -52.49 -0.40 1.78 16 42 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -32.64 358.69 -9.73 -42.37 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.68 Total: 2.71 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.64 Total: -27.09 kcal Atomic # 7 Polarization: -19.16 SS G_CDS: 0.76 Total: -18.40 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -2.76 Total: -43.89 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.25 Total: 18.26 kcal Atomic # 16 Polarization: 21.20 SS G_CDS: -0.57 Total: 20.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.64 -9.73 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792068560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.675 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds