Wall clock time and date at job start Tue Mar 31 2020 20:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86803 * 119.99790 * 2 1 4 4 H 1.48507 * 109.47210 * 83.30938 * 3 2 1 5 5 H 1.48498 * 109.46968 * 203.30833 * 3 2 1 6 6 H 1.48494 * 109.47316 * 323.30880 * 3 2 1 7 7 C 1.40237 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 23.93333 * 7 2 1 9 9 C 1.41091 * 119.99947 * 203.92963 * 7 2 1 10 10 C 1.40904 * 120.10104 * 26.43817 * 9 7 2 11 11 C 1.36298 * 119.89872 * 179.73529 * 10 9 7 12 12 C 1.40068 * 120.10140 * 0.54440 * 11 10 9 13 13 C 1.47508 * 119.90091 * 179.71100 * 12 11 10 14 14 O 1.21507 * 120.00135 * 180.02562 * 13 12 11 15 15 O 1.34774 * 120.00063 * 0.02562 * 13 12 11 16 16 C 1.45195 * 117.00240 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47171 * 179.97438 * 16 15 13 18 18 H 1.08991 * 109.38565 * 55.20912 * 17 16 15 19 19 C 1.52589 * 109.38483 * 175.00339 * 17 16 15 20 20 C 1.52588 * 110.64237 * 190.14394 * 19 17 16 21 21 C 1.53034 * 109.98442 * 290.00895 * 20 19 17 22 22 S 1.81670 * 108.99865 * 63.65147 * 21 20 19 23 23 O 1.42110 * 108.66447 * 60.02675 * 22 21 20 24 24 O 1.42095 * 108.66415 * 191.36774 * 22 21 20 25 25 C 1.53038 * 109.38512 * 295.52316 * 17 16 15 26 26 C 1.40066 * 120.19795 * 359.73301 * 12 11 10 27 27 C 1.36302 * 120.10318 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00034 * 173.18723 * 1 2 3 29 29 H 1.08002 * 120.04481 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.94850 * 180.27287 * 11 10 9 31 31 H 1.09001 * 109.47115 * 299.99988 * 16 15 13 32 32 H 1.09004 * 109.47132 * 59.99854 * 16 15 13 33 33 H 1.09000 * 109.23951 * 310.44306 * 19 17 16 34 34 H 1.08994 * 109.24365 * 69.88018 * 19 17 16 35 35 H 1.08999 * 109.38529 * 50.17207 * 20 19 17 36 36 H 1.09007 * 109.38175 * 169.85269 * 20 19 17 37 37 H 1.09007 * 109.54725 * 183.50521 * 21 20 19 38 38 H 1.08992 * 109.55061 * 303.69593 * 21 20 19 39 39 H 1.08999 * 109.55297 * 296.04938 * 25 17 16 40 40 H 1.09005 * 109.54974 * 56.33939 * 25 17 16 41 41 H 1.08001 * 119.95089 * 180.02562 * 26 12 11 42 42 H 1.08004 * 120.05256 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3466 2.1281 1.3906 5 1 3.6013 1.4036 -0.5540 6 1 1.5156 2.6078 -0.8365 7 6 2.0076 -1.2145 -0.0005 8 1 1.5372 -2.1094 -0.3804 9 6 3.3275 -1.2672 0.4951 10 6 3.7573 -0.3359 1.4612 11 6 5.0317 -0.3940 1.9411 12 6 5.9171 -1.3703 1.4670 13 6 7.2972 -1.4251 1.9847 14 8 8.0669 -2.2711 1.5744 15 8 7.7045 -0.5369 2.9130 16 6 9.0755 -0.6506 3.3773 17 6 9.3524 0.4344 4.4199 18 1 8.6171 0.3623 5.2211 19 6 10.7512 0.2371 4.9969 20 6 10.9657 1.1399 6.2082 21 6 11.0545 2.6011 5.7623 22 16 9.4669 3.0932 5.0288 23 8 8.4477 2.9428 6.0076 24 8 9.6337 4.3480 4.3834 25 6 9.2483 1.8113 3.7601 26 6 5.4960 -2.2945 0.5024 27 6 4.2216 -2.2477 0.0211 28 1 -0.4850 -0.8341 -0.0997 29 1 3.0765 0.4198 1.8242 30 1 5.3607 0.3167 2.6848 31 1 9.2271 -1.6326 3.8253 32 1 9.7559 -0.5265 2.5348 33 1 10.8719 -0.8034 5.2984 34 1 11.4916 0.4782 4.2343 35 1 10.1309 1.0225 6.8993 36 1 11.8913 0.8579 6.7102 37 1 11.2695 3.2330 6.6241 38 1 11.8484 2.7094 5.0235 39 1 10.0250 1.9123 3.0021 40 1 8.2678 1.9204 3.2965 41 1 6.1819 -3.0459 0.1399 42 1 3.8979 -2.9604 -0.7230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792068560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:06 Heat of formation + Delta-G solvation = -182.129192 kcal Electronic energy + Delta-G solvation = -26600.570375 eV Core-core repulsion = 22635.815812 eV Total energy + Delta-G solvation = -3964.754564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36643 -39.60481 -38.75729 -37.90563 -37.05599 -36.94839 -35.88356 -33.44380 -32.49001 -31.78873 -28.97838 -28.24838 -27.06736 -24.17558 -23.22490 -22.99600 -21.79714 -21.49331 -20.24297 -19.80623 -18.75292 -18.10078 -17.72780 -17.48755 -16.96430 -16.59766 -16.37913 -16.26637 -16.01724 -15.74100 -15.36689 -15.02078 -14.68039 -14.39103 -14.34416 -14.24094 -13.95895 -13.80507 -13.33824 -13.27971 -13.13212 -13.05968 -12.93788 -12.68364 -12.61073 -12.33349 -12.30608 -12.12473 -11.92819 -11.83404 -11.58372 -11.43056 -11.39354 -11.35033 -11.01468 -10.94188 -9.90825 -9.77763 -9.44186 -6.78329 -0.90097 0.09177 0.86139 1.32234 1.45485 1.73377 1.77331 1.79279 1.83995 2.09512 2.55785 2.76088 2.97326 3.38442 3.48008 3.59153 3.72107 3.80807 3.95739 4.05388 4.15880 4.25598 4.27153 4.32853 4.46933 4.48626 4.59209 4.65736 4.70654 4.82151 4.88347 4.90592 4.94989 5.10440 5.19162 5.24136 5.31597 5.35874 5.39154 5.57492 5.65813 5.75628 5.91250 6.23426 6.42342 6.59197 6.96979 7.75128 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002946 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.772191 B = 9503.710762 C =11006.292786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.020 3.980 3 Si 1.094 2.906 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.101 3.899 10 C -0.268 4.268 11 C -0.011 4.011 12 C -0.284 4.284 13 C 0.524 3.476 14 O -0.562 6.562 15 O -0.362 6.362 16 C 0.068 3.932 17 C -0.075 4.075 18 H 0.096 0.904 19 C -0.134 4.134 20 C -0.110 4.110 21 C -0.578 4.578 22 S 2.412 3.588 23 O -0.981 6.981 24 O -0.990 6.990 25 C -0.601 4.601 26 C -0.014 4.014 27 C -0.240 4.240 28 H 0.289 0.711 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.107 4.177 11.195 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.199 4.199 3 Si 0.914 3.086 4 H -0.179 1.179 5 H -0.185 1.185 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.286 4.286 11 C -0.029 4.029 12 C -0.286 4.286 13 C 0.376 3.624 14 O -0.457 6.457 15 O -0.279 6.279 16 C -0.007 4.007 17 C -0.094 4.094 18 H 0.115 0.885 19 C -0.171 4.171 20 C -0.149 4.149 21 C -0.711 4.711 22 S 2.600 3.400 23 O -0.978 6.978 24 O -0.987 6.987 25 C -0.731 4.731 26 C -0.032 4.032 27 C -0.259 4.259 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.152 0.848 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.179 0.821 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 22.420 6.285 11.388 25.920 hybrid contribution -0.267 -2.740 -0.729 2.848 sum 22.153 3.545 10.659 24.838 Atomic orbital electron populations 1.70499 1.08740 1.33953 1.29207 1.28447 0.95566 1.06868 0.89063 0.83336 0.75328 0.70473 0.79502 1.17902 1.18470 1.19913 1.20959 0.98812 0.97601 1.36711 0.91678 1.18098 0.92213 0.91063 0.88904 1.20899 0.97785 1.05605 1.04353 1.20856 0.92084 0.94611 0.95366 1.18534 0.91857 1.07237 1.10946 1.21113 0.87948 0.77587 0.75785 1.90703 1.56522 1.38368 1.60106 1.86528 1.33145 1.54126 1.54077 1.23264 0.79412 1.00079 0.97935 1.21028 1.01048 0.90244 0.97068 0.88538 1.21779 0.93494 1.03218 0.98643 1.21351 1.06366 0.88996 0.98144 1.30064 1.19230 1.07287 1.14542 1.07911 0.79167 0.75988 0.76904 1.93543 1.57343 1.87256 1.59701 1.93539 1.87463 1.40844 1.76825 1.30323 1.13178 1.12018 1.17567 1.20590 0.95182 0.95025 0.92421 1.20857 0.93908 1.05003 1.06107 0.89952 0.86972 0.84836 0.90221 0.90311 0.87904 0.87877 0.90101 0.86314 0.83054 0.81737 0.82149 0.85499 0.86235 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.58 13.64 21.87 0.30 -40.28 16 2 C 0.02 1.01 5.33 85.36 0.46 1.47 16 3 Si 1.09 45.27 25.01 68.60 1.72 46.99 16 4 H -0.25 -9.77 6.68 99.48 0.66 -9.11 16 5 H -0.26 -10.79 7.02 99.48 0.70 -10.10 16 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.51 -26.37 9.39 23.46 0.22 -26.15 16 8 H 0.07 3.47 8.06 -2.91 -0.02 3.44 16 9 C 0.10 4.90 5.15 -21.27 -0.11 4.79 16 10 C -0.27 -12.15 7.30 22.47 0.16 -11.98 16 11 C -0.01 -0.45 9.55 22.26 0.21 -0.23 16 12 C -0.28 -11.84 5.89 -19.95 -0.12 -11.96 16 13 C 0.52 19.86 7.89 70.27 0.55 20.42 16 14 O -0.56 -22.71 16.11 19.81 0.32 -22.39 16 15 O -0.36 -11.20 8.90 -56.85 -0.51 -11.70 16 16 C 0.07 1.43 4.83 71.98 0.35 1.77 16 17 C -0.07 -1.07 2.26 -10.92 -0.02 -1.09 16 18 H 0.10 1.54 8.01 -2.39 -0.02 1.52 16 19 C -0.13 -0.80 4.93 30.32 0.15 -0.65 16 20 C -0.11 -0.51 5.73 30.47 0.17 -0.33 16 21 C -0.58 -3.11 6.35 71.99 0.46 -2.65 16 22 S 2.41 39.21 5.31 -56.49 -0.30 38.91 16 23 O -0.98 -24.51 17.94 -127.40 -2.28 -26.80 16 24 O -0.99 -24.22 18.10 -127.40 -2.31 -26.53 16 25 C -0.60 -8.89 5.56 71.99 0.40 -8.49 16 26 C -0.01 -0.59 9.52 22.26 0.21 -0.37 16 27 C -0.24 -10.90 9.73 22.47 0.22 -10.68 16 28 H 0.29 14.27 8.73 -92.71 -0.81 13.46 16 29 H 0.11 4.95 4.72 -2.91 -0.01 4.94 16 30 H 0.13 4.77 7.59 -2.91 -0.02 4.75 16 31 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 0.44 8.06 -2.39 -0.02 0.42 16 34 H 0.10 0.19 8.09 -2.39 -0.02 0.18 16 35 H 0.08 0.54 8.01 -2.39 -0.02 0.52 16 36 H 0.12 0.02 8.14 -2.38 -0.02 0.01 16 37 H 0.15 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.13 2.42 7.71 -2.39 -0.02 2.40 16 41 H 0.12 4.74 7.63 -2.91 -0.02 4.72 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -72.34 358.69 1.19 -71.14 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.94 Total: 16.80 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 3.31 Total: -46.13 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.30 Total: -40.28 kcal Atomic # 8 Polarization: -82.64 SS G_CDS: -4.78 Total: -87.42 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.72 Total: 46.99 kcal Atomic # 16 Polarization: 39.21 SS G_CDS: -0.30 Total: 38.91 kcal Total: -72.34 1.19 -71.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792068560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.988 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds