Wall clock time and date at job start Tue Mar 31 2020 20:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48498 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46933 * 300.00248 * 3 2 1 6 6 H 1.48501 * 109.46938 * 60.00015 * 3 2 1 7 7 C 1.37884 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47389 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.34224 * 116.99663 * 179.97438 * 12 11 10 14 14 O 1.20821 * 120.00687 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99441 * 179.97438 * 13 12 11 16 16 H 1.08998 * 108.55746 * 339.04758 * 15 13 12 17 17 C 1.51835 * 108.60796 * 221.12453 * 15 13 12 18 18 C 1.53623 * 109.06414 * 177.23277 * 17 15 13 19 19 S 1.81778 * 106.91552 * 71.60255 * 18 17 15 20 20 O 1.42100 * 110.64118 * 203.65982 * 19 18 17 21 21 O 1.42098 * 110.73334 * 66.49637 * 19 18 17 22 22 C 1.76575 * 103.66023 * 315.05790 * 19 18 17 23 23 C 1.38799 * 117.86843 * 191.59888 * 22 19 18 24 24 C 1.37928 * 120.65417 * 181.65169 * 23 22 19 25 25 C 1.38274 * 119.41371 * 359.91400 * 24 23 22 26 26 C 1.37699 * 119.90017 * 359.59337 * 25 24 23 27 27 C 1.37539 * 121.87896 * 12.41255 * 22 19 18 28 28 H 0.97000 * 119.99526 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 59.99534 * 9 7 2 30 30 H 1.09003 * 109.47449 * 300.00247 * 9 7 2 31 31 H 1.08993 * 109.47356 * 59.99749 * 10 9 7 32 32 H 1.08997 * 109.46783 * 299.99880 * 10 9 7 33 33 H 1.09000 * 109.46909 * 59.99647 * 11 10 9 34 34 H 1.08997 * 109.46906 * 299.99616 * 11 10 9 35 35 H 1.09000 * 109.54283 * 297.24581 * 17 15 13 36 36 H 1.09005 * 109.53448 * 57.49077 * 17 15 13 37 37 H 1.09008 * 110.03808 * 312.24009 * 18 17 15 38 38 H 1.08999 * 110.03914 * 190.96313 * 18 17 15 39 39 H 1.07997 * 119.67375 * 1.63697 * 23 22 19 40 40 H 1.07999 * 120.29192 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.04996 * 179.57507 * 25 24 23 42 42 H 1.08005 * 119.50680 * 180.11968 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9872 0.0012 12 8 2.4236 -6.0909 0.0018 13 6 1.9105 -7.3311 0.0019 14 8 0.7127 -7.4895 0.0010 15 6 2.8285 -8.5263 0.0019 16 1 3.8051 -8.2136 -0.3676 17 6 2.2640 -9.5709 -0.9444 18 6 3.2277 -10.7657 -1.0056 19 16 3.0959 -11.6335 0.5862 20 8 4.2755 -12.3812 0.8483 21 8 1.8085 -12.2159 0.7365 22 6 3.1294 -10.3295 1.7762 23 6 3.2923 -10.6732 3.1110 24 6 3.2927 -9.7036 4.0919 25 6 3.1306 -8.3773 3.7358 26 6 2.9792 -8.0360 2.4104 27 6 2.9833 -9.0109 1.4132 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.8711 -3.6041 0.8922 32 1 2.8724 -3.6048 -0.8877 33 1 0.8544 -5.0450 -0.8895 34 1 0.8525 -5.0448 0.8905 35 1 1.2910 -9.9030 -0.5824 36 1 2.1563 -9.1405 -1.9401 37 1 4.2489 -10.4146 -1.1541 38 1 2.9428 -11.4341 -1.8181 39 1 3.4198 -11.7102 3.3843 40 1 3.4196 -9.9777 5.1288 41 1 3.1225 -7.6103 4.4961 42 1 2.8549 -6.9980 2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792820641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:47 Heat of formation + Delta-G solvation = -140.967914 kcal Electronic energy + Delta-G solvation = -26675.393522 eV Core-core repulsion = 22712.423845 eV Total energy + Delta-G solvation = -3962.969677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18939 -39.49805 -37.48608 -37.02537 -36.36560 -35.80962 -34.10166 -31.99963 -31.64510 -31.53431 -28.76020 -27.04756 -24.24344 -23.67725 -23.37837 -22.29479 -20.65550 -20.30020 -19.29392 -18.28412 -17.82427 -17.09980 -16.86372 -16.75148 -16.17413 -16.16190 -15.84666 -15.31813 -14.97706 -14.53163 -14.37048 -14.27927 -13.89103 -13.74015 -13.21730 -13.07991 -12.95182 -12.51621 -12.48852 -12.37106 -12.28889 -12.22209 -12.08939 -11.92527 -11.75815 -11.20355 -11.05504 -10.78084 -10.76129 -10.73185 -10.54370 -10.53219 -9.84622 -9.75260 -9.60484 -9.26312 -9.22135 -8.45798 -6.10283 -4.13633 -0.35133 0.40704 0.80626 1.99174 2.33866 2.48106 3.09005 3.18833 3.25262 3.33065 3.36822 3.69890 3.71501 3.96891 4.17730 4.36613 4.42413 4.44964 4.53499 4.64160 4.73795 4.82210 4.90034 4.97895 5.16149 5.25935 5.26444 5.39430 5.42997 5.43349 5.46278 5.61082 5.81660 5.87039 5.98827 6.27996 6.40364 6.41481 6.67508 6.86708 7.52006 7.61864 7.63982 7.87647 8.28031 8.92852 9.51194 11.01149 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.002283 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.821075 B =12261.149388 C =12871.652984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.066 3.934 12 O -0.354 6.354 13 C 0.467 3.533 14 O -0.494 6.494 15 C -0.064 4.064 16 H 0.134 0.866 17 C -0.103 4.103 18 C -0.598 4.598 19 S 2.491 3.509 20 O -0.935 6.935 21 O -0.927 6.927 22 C -0.627 4.627 23 C -0.026 4.026 24 C -0.129 4.129 25 C -0.061 4.061 26 C -0.136 4.136 27 C 0.010 3.990 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -24.004 1.941 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.007 4.007 12 O -0.271 6.271 13 C 0.308 3.692 14 O -0.380 6.380 15 C -0.083 4.083 16 H 0.151 0.849 17 C -0.141 4.141 18 C -0.728 4.728 19 S 2.671 3.329 20 O -0.932 6.932 21 O -0.925 6.925 22 C -0.713 4.713 23 C -0.045 4.045 24 C -0.148 4.148 25 C -0.079 4.079 26 C -0.154 4.154 27 C 0.009 3.991 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.021 -24.753 2.120 26.106 hybrid contribution 0.333 2.044 0.028 2.071 sum 8.354 -22.709 2.149 24.292 Atomic orbital electron populations 1.69973 1.06106 1.26744 1.50454 1.25037 0.94883 0.99425 0.95131 0.86487 0.80069 0.83506 0.77658 1.19662 1.20932 1.20944 1.21188 0.93140 0.90618 1.51106 0.92369 1.19057 0.93813 0.90732 0.97727 1.21782 0.99967 0.90829 1.02063 1.23619 0.91211 0.83380 1.02488 1.86530 1.42842 1.14900 1.82825 1.22864 0.88187 0.84870 0.73307 1.90707 1.16414 1.86708 1.44208 1.19921 1.01808 0.92854 0.93677 0.84883 1.21243 0.98621 0.92405 1.01880 1.30283 1.09557 1.11014 1.21919 1.05731 0.75120 0.74964 0.77097 1.93604 1.48695 1.67436 1.83509 1.93636 1.40089 1.73857 1.84879 1.29890 1.17349 1.11482 1.12625 1.20781 0.92918 1.00351 0.90476 1.21293 1.00590 0.93005 0.99866 1.21382 0.93456 0.96804 0.96216 1.21671 1.00490 0.99992 0.93268 1.18779 0.94929 0.92106 0.93270 0.92882 0.96200 0.96230 0.92089 0.92029 0.91173 0.91279 0.87768 0.87293 0.83512 0.83210 0.84630 0.84476 0.84552 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.10 5.53 -26.73 -0.15 -2.25 16 11 C 0.07 1.10 5.47 37.16 0.20 1.31 16 12 O -0.35 -5.13 9.43 -39.24 -0.37 -5.50 16 13 C 0.47 6.17 5.28 36.01 0.19 6.36 16 14 O -0.49 -7.96 16.13 -18.75 -0.30 -8.27 16 15 C -0.06 -0.59 2.41 -93.84 -0.23 -0.82 16 16 H 0.13 0.86 8.13 -51.93 -0.42 0.43 16 17 C -0.10 -0.76 4.72 -27.00 -0.13 -0.89 16 18 C -0.60 -2.97 6.59 37.48 0.25 -2.72 16 19 S 2.49 21.74 5.22 -107.50 -0.56 21.18 16 20 O -0.94 -10.23 17.81 -57.52 -1.02 -11.25 16 21 O -0.93 -11.10 17.93 -57.52 -1.03 -12.13 16 22 C -0.63 -6.26 5.68 -39.63 -0.22 -6.48 16 23 C -0.03 -0.25 9.48 -39.49 -0.37 -0.62 16 24 C -0.13 -1.10 10.07 -39.68 -0.40 -1.50 16 25 C -0.06 -0.56 10.03 -39.76 -0.40 -0.96 16 26 C -0.14 -1.47 8.96 -39.32 -0.35 -1.83 16 27 C 0.01 0.11 5.53 -104.75 -0.58 -0.47 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 34 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 35 H 0.10 0.89 7.78 -51.93 -0.40 0.49 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.15 0.38 8.09 -51.92 -0.42 -0.04 16 38 H 0.15 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.14 1.04 8.05 -52.49 -0.42 0.62 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.14 1.55 6.20 -52.48 -0.33 1.22 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -36.20 365.49 -10.57 -46.77 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.76 Total: -3.33 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.74 Total: -23.51 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -2.73 Total: -37.15 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 21.74 SS G_CDS: -0.56 Total: 21.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.20 -10.57 -46.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792820641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.198 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds