Wall clock time and date at job start Tue Mar 31 2020 20:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48498 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46933 * 300.00248 * 3 2 1 6 6 H 1.48501 * 109.46938 * 60.00015 * 3 2 1 7 7 C 1.37884 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47389 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.34224 * 116.99663 * 179.97438 * 12 11 10 14 14 O 1.20821 * 120.00687 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99441 * 179.97438 * 13 12 11 16 16 H 1.08998 * 108.55746 * 339.04758 * 15 13 12 17 17 C 1.51835 * 108.60796 * 221.12453 * 15 13 12 18 18 C 1.53623 * 109.06414 * 177.23277 * 17 15 13 19 19 S 1.81778 * 106.91552 * 71.60255 * 18 17 15 20 20 O 1.42100 * 110.64118 * 203.65982 * 19 18 17 21 21 O 1.42098 * 110.73334 * 66.49637 * 19 18 17 22 22 C 1.76575 * 103.66023 * 315.05790 * 19 18 17 23 23 C 1.38799 * 117.86843 * 191.59888 * 22 19 18 24 24 C 1.37928 * 120.65417 * 181.65169 * 23 22 19 25 25 C 1.38274 * 119.41371 * 359.91400 * 24 23 22 26 26 C 1.37699 * 119.90017 * 359.59337 * 25 24 23 27 27 C 1.37539 * 121.87896 * 12.41255 * 22 19 18 28 28 H 0.97000 * 119.99526 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 59.99534 * 9 7 2 30 30 H 1.09003 * 109.47449 * 300.00247 * 9 7 2 31 31 H 1.08993 * 109.47356 * 59.99749 * 10 9 7 32 32 H 1.08997 * 109.46783 * 299.99880 * 10 9 7 33 33 H 1.09000 * 109.46909 * 59.99647 * 11 10 9 34 34 H 1.08997 * 109.46906 * 299.99616 * 11 10 9 35 35 H 1.09000 * 109.54283 * 297.24581 * 17 15 13 36 36 H 1.09005 * 109.53448 * 57.49077 * 17 15 13 37 37 H 1.09008 * 110.03808 * 312.24009 * 18 17 15 38 38 H 1.08999 * 110.03914 * 190.96313 * 18 17 15 39 39 H 1.07997 * 119.67375 * 1.63697 * 23 22 19 40 40 H 1.07999 * 120.29192 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.04996 * 179.57507 * 25 24 23 42 42 H 1.08005 * 119.50680 * 180.11968 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9872 0.0012 12 8 2.4236 -6.0909 0.0018 13 6 1.9105 -7.3311 0.0019 14 8 0.7127 -7.4895 0.0010 15 6 2.8285 -8.5263 0.0019 16 1 3.8051 -8.2136 -0.3676 17 6 2.2640 -9.5709 -0.9444 18 6 3.2277 -10.7657 -1.0056 19 16 3.0959 -11.6335 0.5862 20 8 4.2755 -12.3812 0.8483 21 8 1.8085 -12.2159 0.7365 22 6 3.1294 -10.3295 1.7762 23 6 3.2923 -10.6732 3.1110 24 6 3.2927 -9.7036 4.0919 25 6 3.1306 -8.3773 3.7358 26 6 2.9792 -8.0360 2.4104 27 6 2.9833 -9.0109 1.4132 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.8711 -3.6041 0.8922 32 1 2.8724 -3.6048 -0.8877 33 1 0.8544 -5.0450 -0.8895 34 1 0.8525 -5.0448 0.8905 35 1 1.2910 -9.9030 -0.5824 36 1 2.1563 -9.1405 -1.9401 37 1 4.2489 -10.4146 -1.1541 38 1 2.9428 -11.4341 -1.8181 39 1 3.4198 -11.7102 3.3843 40 1 3.4196 -9.9777 5.1288 41 1 3.1225 -7.6103 4.4961 42 1 2.8549 -6.9980 2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792820641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:46 Heat of formation + Delta-G solvation = -164.427496 kcal Electronic energy + Delta-G solvation = -26676.410806 eV Core-core repulsion = 22712.423845 eV Total energy + Delta-G solvation = -3963.986961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17825 -40.34954 -38.28964 -38.06985 -37.15142 -36.60843 -35.95881 -33.71630 -32.51056 -32.19243 -29.72720 -28.63131 -25.46236 -24.71027 -24.15282 -23.34423 -22.18901 -21.37237 -19.95901 -19.19065 -18.81555 -18.49558 -17.76553 -17.73882 -17.49974 -17.09351 -16.61696 -16.49532 -16.08998 -15.74897 -15.54809 -14.94418 -14.88303 -14.68506 -14.25734 -13.96595 -13.86458 -13.79821 -13.66078 -13.58417 -13.27651 -13.15569 -13.11977 -12.87064 -12.62600 -12.52128 -12.47922 -12.37642 -12.11196 -11.98016 -11.79147 -11.44875 -11.43500 -11.33526 -11.22232 -10.58733 -10.47302 -9.99171 -8.22833 -6.34032 -0.96867 -0.31070 0.06269 0.94238 1.40176 1.41154 1.44047 1.55140 1.70254 2.36257 2.40684 2.57529 2.99065 3.11615 3.14202 3.24423 3.58527 3.62985 3.77060 3.91917 3.96139 3.98351 4.02903 4.16153 4.19004 4.26556 4.39725 4.44880 4.56249 4.66851 4.71890 4.78917 4.82638 4.88874 4.93224 5.07041 5.12632 5.27298 5.34173 5.49648 5.63303 5.70726 5.79899 6.18183 6.52729 6.82650 7.35836 8.89519 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.002283 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.821075 B =12261.149388 C =12871.652984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.076 3.924 12 O -0.349 6.349 13 C 0.468 3.532 14 O -0.526 6.526 15 C -0.059 4.059 16 H 0.169 0.831 17 C -0.110 4.110 18 C -0.565 4.565 19 S 2.492 3.508 20 O -0.963 6.963 21 O -0.970 6.970 22 C -0.637 4.637 23 C -0.046 4.046 24 C -0.129 4.129 25 C -0.068 4.068 26 C -0.160 4.160 27 C 0.001 3.999 28 H 0.264 0.736 29 H -0.003 1.003 30 H -0.004 1.004 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.148 0.852 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -24.354 1.065 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.002 3.998 12 O -0.266 6.266 13 C 0.311 3.689 14 O -0.415 6.415 15 C -0.078 4.078 16 H 0.186 0.814 17 C -0.149 4.149 18 C -0.698 4.698 19 S 2.675 3.325 20 O -0.960 6.960 21 O -0.967 6.967 22 C -0.723 4.723 23 C -0.065 4.065 24 C -0.147 4.147 25 C -0.086 4.086 26 C -0.179 4.179 27 C 0.000 4.000 28 H 0.073 0.927 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.201 0.799 38 H 0.204 0.796 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.281 -25.139 1.288 27.190 hybrid contribution -0.391 2.121 0.308 2.178 sum 9.891 -23.018 1.596 25.104 Atomic orbital electron populations 1.70104 1.07882 1.27846 1.51595 1.25998 0.95754 1.03497 0.94675 0.85364 0.79191 0.78596 0.77698 1.18276 1.20468 1.20542 1.21653 0.93763 0.91835 1.50609 0.91602 1.18940 0.94303 0.92536 0.95447 1.21454 0.98677 0.90198 1.02758 1.23198 0.90963 0.83530 1.02077 1.86516 1.41890 1.15107 1.83046 1.23691 0.88457 0.84992 0.71712 1.90700 1.18168 1.86931 1.45693 1.20137 1.02561 0.91250 0.93823 0.81370 1.21364 0.98405 0.92699 1.02391 1.30147 1.11254 1.09699 1.18723 1.05624 0.73665 0.74818 0.78388 1.93565 1.49052 1.68684 1.84675 1.93584 1.41691 1.75265 1.86139 1.30079 1.17250 1.11544 1.13393 1.21177 0.93035 1.01403 0.90898 1.21647 0.99422 0.92461 1.01172 1.21675 0.92963 0.97774 0.96171 1.21793 1.01921 0.99745 0.94403 1.18893 0.95220 0.92149 0.93738 0.92713 0.98461 0.98608 0.91380 0.91180 0.91490 0.91972 0.89397 0.84902 0.79918 0.79623 0.83477 0.81690 0.82791 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.58 5.53 30.60 0.17 -3.41 16 11 C 0.08 2.55 5.47 71.98 0.39 2.94 16 12 O -0.35 -9.74 9.43 -51.36 -0.48 -10.22 16 13 C 0.47 11.92 5.28 71.24 0.38 12.30 16 14 O -0.53 -16.99 16.13 21.98 0.35 -16.64 16 15 C -0.06 -0.97 2.41 -12.88 -0.03 -1.00 16 16 H 0.17 1.51 8.13 -2.39 -0.02 1.49 16 17 C -0.11 -1.31 4.72 30.42 0.14 -1.16 16 18 C -0.56 -3.39 6.59 72.19 0.48 -2.91 16 19 S 2.49 40.46 5.22 -56.49 -0.29 40.17 16 20 O -0.96 -20.08 17.81 -127.67 -2.27 -22.36 16 21 O -0.97 -23.24 17.93 -127.67 -2.29 -25.53 16 22 C -0.64 -12.24 5.68 22.24 0.13 -12.11 16 23 C -0.05 -0.86 9.48 22.33 0.21 -0.65 16 24 C -0.13 -2.07 10.07 22.20 0.22 -1.84 16 25 C -0.07 -1.22 10.03 22.15 0.22 -0.99 16 26 C -0.16 -3.42 8.96 22.44 0.20 -3.22 16 27 C 0.00 0.02 5.53 -19.95 -0.11 -0.09 16 28 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 34 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 35 H 0.09 1.39 7.78 -2.39 -0.02 1.37 16 36 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.18 -0.07 8.09 -2.38 -0.02 -0.09 16 38 H 0.19 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.15 2.24 8.05 -2.91 -0.02 2.21 16 40 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 42 H 0.13 2.87 6.20 -2.91 -0.02 2.86 16 Total: -1.00 -80.73 365.49 1.60 -79.14 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.03 Total: 5.73 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 3.25 Total: -39.76 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -70.05 SS G_CDS: -4.69 Total: -74.75 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 40.46 SS G_CDS: -0.29 Total: 40.17 kcal Total: -80.73 1.60 -79.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792820641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.291 kcal (2) G-P(sol) polarization free energy of solvation -80.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds