Wall clock time and date at job start Tue Mar 31 2020 20:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48503 * 109.46869 * 90.00022 * 3 2 1 5 5 H 1.48502 * 109.46923 * 209.99982 * 3 2 1 6 6 H 1.48497 * 109.47156 * 329.99988 * 3 2 1 7 7 C 1.37878 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99522 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46861 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47310 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47505 * 179.97438 * 11 10 9 13 13 C 1.34229 * 116.99953 * 179.97438 * 12 11 10 14 14 O 1.20822 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99784 * 180.02562 * 13 12 11 16 16 H 1.08998 * 108.54427 * 20.92498 * 15 13 12 17 17 C 1.51822 * 108.59810 * 138.82280 * 15 13 12 18 18 C 1.53653 * 109.06465 * 182.50782 * 17 15 13 19 19 S 1.81781 * 106.86008 * 288.26331 * 18 17 15 20 20 O 1.42095 * 110.64515 * 293.59027 * 19 18 17 21 21 O 1.42102 * 110.74192 * 156.41766 * 19 18 17 22 22 C 1.76585 * 103.63301 * 44.98908 * 19 18 17 23 23 C 1.38802 * 117.85747 * 168.28572 * 22 19 18 24 24 C 1.37931 * 120.65760 * 179.18508 * 23 22 19 25 25 C 1.38274 * 119.40673 * 0.02562 * 24 23 22 26 26 C 1.37696 * 119.90280 * 0.29594 * 25 24 23 27 27 C 1.37529 * 121.88068 * 348.03548 * 22 19 18 28 28 H 0.96998 * 120.00201 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46712 * 299.99282 * 9 7 2 30 30 H 1.08999 * 109.47435 * 59.99829 * 9 7 2 31 31 H 1.08996 * 109.46984 * 299.99699 * 10 9 7 32 32 H 1.08999 * 109.47217 * 59.99719 * 10 9 7 33 33 H 1.09007 * 109.46995 * 300.00420 * 11 10 9 34 34 H 1.09002 * 109.46648 * 59.99458 * 11 10 9 35 35 H 1.09001 * 109.53488 * 302.24545 * 17 15 13 36 36 H 1.08998 * 109.53949 * 62.49435 * 17 15 13 37 37 H 1.09004 * 109.96694 * 168.95711 * 18 17 15 38 38 H 1.08995 * 110.12435 * 47.65887 * 18 17 15 39 39 H 1.07992 * 119.67277 * 359.15521 * 23 22 19 40 40 H 1.07999 * 120.29747 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.04942 * 180.27703 * 25 24 23 42 42 H 1.07996 * 119.50491 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 8 6.0355 -4.0055 0.0004 13 6 7.3662 -4.1813 -0.0001 14 8 8.1022 -3.2231 -0.0005 15 6 7.9422 -5.5740 -0.0003 16 1 7.1826 -6.2632 -0.3690 17 6 9.1277 -5.6075 -0.9481 18 6 9.6848 -7.0384 -1.0046 19 16 10.5087 -7.3466 0.5862 20 8 11.6528 -6.5158 0.7271 21 8 10.5747 -8.7400 0.8572 22 6 9.3631 -6.7219 1.7761 23 6 9.5832 -7.0290 3.1117 24 6 8.7341 -6.5571 4.0910 25 6 7.6544 -5.7713 3.7324 26 6 7.4330 -5.4725 2.4066 27 6 8.2850 -5.9500 1.4109 28 1 -0.4850 0.8400 -0.0004 29 1 3.8751 -0.6797 -0.8895 30 1 3.8745 -0.6808 0.8905 31 1 3.6578 -3.1505 0.8897 32 1 3.6584 -3.1502 -0.8903 33 1 5.9148 -2.1226 -0.8901 34 1 5.9148 -2.1227 0.8899 35 1 8.8065 -5.3039 -1.9445 36 1 9.9003 -4.9272 -0.5898 37 1 10.4040 -7.1260 -1.8190 38 1 8.8730 -7.7515 -1.1474 39 1 10.4272 -7.6438 3.3869 40 1 8.9110 -6.7993 5.1285 41 1 6.9855 -5.3926 4.4911 42 1 6.5875 -4.8585 2.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792820644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:51 Heat of formation + Delta-G solvation = -137.013582 kcal Electronic energy + Delta-G solvation = -26734.847271 eV Core-core repulsion = 22772.049067 eV Total energy + Delta-G solvation = -3962.798204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25186 -39.55095 -37.52064 -37.09674 -36.39727 -35.86029 -34.19928 -32.06606 -31.75172 -31.56773 -28.88211 -27.48945 -24.27404 -23.64293 -23.37227 -22.24384 -20.71542 -20.23379 -19.32067 -18.32681 -17.87764 -17.13479 -17.05709 -16.85302 -16.42872 -16.23574 -15.89543 -15.36399 -15.03174 -14.45477 -14.38716 -14.23878 -13.95855 -13.75858 -13.25635 -13.12159 -12.93717 -12.81246 -12.59643 -12.52231 -12.39778 -12.38689 -12.12060 -11.97626 -11.81100 -11.24002 -11.16310 -11.08128 -10.80845 -10.76322 -10.58233 -10.11540 -9.92622 -9.81714 -9.77609 -9.32982 -9.29005 -8.63494 -6.13589 -4.13234 -0.38023 0.37586 0.77283 1.91906 2.30680 2.40891 3.05781 3.16108 3.24408 3.32623 3.35017 3.65527 3.68181 3.92645 4.14388 4.36651 4.38989 4.40118 4.49576 4.59505 4.68831 4.79115 4.86340 4.94580 5.12412 5.19227 5.22986 5.30233 5.31743 5.36754 5.39497 5.57522 5.71474 5.78630 5.95620 6.14587 6.26269 6.36669 6.48888 6.67080 7.10881 7.22541 7.54652 7.67024 8.42204 8.90218 9.47647 10.99499 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.002397 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.193486 B =11678.427675 C =12239.785265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.286 1.286 7 C -0.524 4.524 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.063 3.937 12 O -0.352 6.352 13 C 0.468 3.532 14 O -0.494 6.494 15 C -0.063 4.063 16 H 0.134 0.866 17 C -0.103 4.103 18 C -0.598 4.598 19 S 2.491 3.509 20 O -0.928 6.928 21 O -0.935 6.935 22 C -0.627 4.627 23 C -0.026 4.026 24 C -0.128 4.128 25 C -0.061 4.061 26 C -0.136 4.136 27 C 0.010 3.990 28 H 0.264 0.736 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.079 -17.151 1.928 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.009 4.009 12 O -0.269 6.269 13 C 0.309 3.691 14 O -0.381 6.381 15 C -0.082 4.082 16 H 0.152 0.848 17 C -0.142 4.142 18 C -0.728 4.728 19 S 2.671 3.329 20 O -0.925 6.925 21 O -0.932 6.932 22 C -0.713 4.713 23 C -0.045 4.045 24 C -0.147 4.147 25 C -0.079 4.079 26 C -0.155 4.155 27 C 0.009 3.991 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 21.892 -17.074 2.104 27.843 hybrid contribution -0.616 1.495 0.051 1.618 sum 21.276 -15.578 2.155 26.457 Atomic orbital electron populations 1.69901 1.06296 1.27061 1.50622 1.25015 0.94757 0.99193 0.94398 0.86788 0.80363 0.83583 0.78624 1.20188 1.18988 1.21229 1.21033 0.88964 0.94678 1.51469 0.90789 1.19521 0.97609 0.90930 0.96713 1.21578 0.88447 1.00953 1.02928 1.23611 0.97275 0.77635 1.02428 1.86533 1.22661 1.34813 1.82866 1.22892 0.81893 0.91135 0.73202 1.90704 1.60655 1.42476 1.44268 1.19915 1.00178 0.94414 0.93717 0.84819 1.21247 0.97282 0.93786 1.01837 1.30286 1.14928 1.05638 1.21929 1.05738 0.75268 0.74825 0.77090 1.93634 1.44885 1.68991 1.84985 1.93609 1.86027 1.30199 1.83337 1.29890 1.14205 1.14621 1.12584 1.20785 0.98063 0.95178 0.90477 1.21298 0.95243 0.98278 0.99895 1.21381 0.96122 0.94154 0.96201 1.21669 0.99867 1.00649 0.93283 1.18772 0.93108 0.94032 0.93229 0.92575 0.96247 0.96720 0.91481 0.91390 0.91173 0.91302 0.87292 0.87773 0.83195 0.83480 0.84619 0.84455 0.84541 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 10 C -0.10 -1.86 5.53 -26.73 -0.15 -2.01 16 11 C 0.06 0.99 5.47 37.16 0.20 1.19 16 12 O -0.35 -4.84 9.42 -39.25 -0.37 -5.21 16 13 C 0.47 5.88 5.31 36.01 0.19 6.07 16 14 O -0.49 -7.59 16.13 -18.75 -0.30 -7.89 16 15 C -0.06 -0.56 2.40 -93.85 -0.23 -0.78 16 16 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.10 -0.72 4.73 -26.99 -0.13 -0.85 16 18 C -0.60 -2.79 6.59 37.50 0.25 -2.54 16 19 S 2.49 21.05 5.22 -107.50 -0.56 20.49 16 20 O -0.93 -10.84 17.92 -57.52 -1.03 -11.87 16 21 O -0.93 -10.02 17.81 -57.52 -1.02 -11.05 16 22 C -0.63 -6.06 5.68 -39.63 -0.22 -6.28 16 23 C -0.03 -0.24 9.48 -39.49 -0.37 -0.61 16 24 C -0.13 -1.06 10.07 -39.68 -0.40 -1.46 16 25 C -0.06 -0.54 10.03 -39.77 -0.40 -0.94 16 26 C -0.14 -1.42 8.95 -39.32 -0.35 -1.77 16 27 C 0.01 0.10 5.52 -104.75 -0.58 -0.48 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 30 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.09 8.13 -51.93 -0.42 0.66 16 34 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.85 7.76 -51.93 -0.40 0.44 16 37 H 0.15 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.15 0.34 8.09 -51.93 -0.42 -0.08 16 39 H 0.14 1.01 8.05 -52.49 -0.42 0.59 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.14 1.47 6.23 -52.49 -0.33 1.14 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -36.67 361.88 -10.19 -46.86 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.73 Total: -3.16 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.73 Total: -23.72 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.77 Total: -26.39 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -2.73 Total: -36.02 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 21.05 SS G_CDS: -0.56 Total: 20.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.67 -10.19 -46.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792820644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.157 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds