Wall clock time and date at job start Tue Mar 31 2020 20:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48503 * 109.46869 * 90.00022 * 3 2 1 5 5 H 1.48502 * 109.46923 * 209.99982 * 3 2 1 6 6 H 1.48497 * 109.47156 * 329.99988 * 3 2 1 7 7 C 1.37878 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99522 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46861 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47310 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47505 * 179.97438 * 11 10 9 13 13 C 1.34229 * 116.99953 * 179.97438 * 12 11 10 14 14 O 1.20822 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99784 * 180.02562 * 13 12 11 16 16 H 1.08998 * 108.54427 * 20.92498 * 15 13 12 17 17 C 1.51822 * 108.59810 * 138.82280 * 15 13 12 18 18 C 1.53653 * 109.06465 * 182.50782 * 17 15 13 19 19 S 1.81781 * 106.86008 * 288.26331 * 18 17 15 20 20 O 1.42095 * 110.64515 * 293.59027 * 19 18 17 21 21 O 1.42102 * 110.74192 * 156.41766 * 19 18 17 22 22 C 1.76585 * 103.63301 * 44.98908 * 19 18 17 23 23 C 1.38802 * 117.85747 * 168.28572 * 22 19 18 24 24 C 1.37931 * 120.65760 * 179.18508 * 23 22 19 25 25 C 1.38274 * 119.40673 * 0.02562 * 24 23 22 26 26 C 1.37696 * 119.90280 * 0.29594 * 25 24 23 27 27 C 1.37529 * 121.88068 * 348.03548 * 22 19 18 28 28 H 0.96998 * 120.00201 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46712 * 299.99282 * 9 7 2 30 30 H 1.08999 * 109.47435 * 59.99829 * 9 7 2 31 31 H 1.08996 * 109.46984 * 299.99699 * 10 9 7 32 32 H 1.08999 * 109.47217 * 59.99719 * 10 9 7 33 33 H 1.09007 * 109.46995 * 300.00420 * 11 10 9 34 34 H 1.09002 * 109.46648 * 59.99458 * 11 10 9 35 35 H 1.09001 * 109.53488 * 302.24545 * 17 15 13 36 36 H 1.08998 * 109.53949 * 62.49435 * 17 15 13 37 37 H 1.09004 * 109.96694 * 168.95711 * 18 17 15 38 38 H 1.08995 * 110.12435 * 47.65887 * 18 17 15 39 39 H 1.07992 * 119.67277 * 359.15521 * 23 22 19 40 40 H 1.07999 * 120.29747 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.04942 * 180.27703 * 25 24 23 42 42 H 1.07996 * 119.50491 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 8 6.0355 -4.0055 0.0004 13 6 7.3662 -4.1813 -0.0001 14 8 8.1022 -3.2231 -0.0005 15 6 7.9422 -5.5740 -0.0003 16 1 7.1826 -6.2632 -0.3690 17 6 9.1277 -5.6075 -0.9481 18 6 9.6848 -7.0384 -1.0046 19 16 10.5087 -7.3466 0.5862 20 8 11.6528 -6.5158 0.7271 21 8 10.5747 -8.7400 0.8572 22 6 9.3631 -6.7219 1.7761 23 6 9.5832 -7.0290 3.1117 24 6 8.7341 -6.5571 4.0910 25 6 7.6544 -5.7713 3.7324 26 6 7.4330 -5.4725 2.4066 27 6 8.2850 -5.9500 1.4109 28 1 -0.4850 0.8400 -0.0004 29 1 3.8751 -0.6797 -0.8895 30 1 3.8745 -0.6808 0.8905 31 1 3.6578 -3.1505 0.8897 32 1 3.6584 -3.1502 -0.8903 33 1 5.9148 -2.1226 -0.8901 34 1 5.9148 -2.1227 0.8899 35 1 8.8065 -5.3039 -1.9445 36 1 9.9003 -4.9272 -0.5898 37 1 10.4040 -7.1260 -1.8190 38 1 8.8730 -7.7515 -1.1474 39 1 10.4272 -7.6438 3.3869 40 1 8.9110 -6.7993 5.1285 41 1 6.9855 -5.3926 4.4911 42 1 6.5875 -4.8585 2.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792820644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:50 Heat of formation + Delta-G solvation = -161.556023 kcal Electronic energy + Delta-G solvation = -26735.911511 eV Core-core repulsion = 22772.049067 eV Total energy + Delta-G solvation = -3963.862444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17188 -40.34921 -38.29395 -38.06938 -37.15086 -36.60278 -35.95619 -33.89325 -32.52083 -32.19057 -29.93268 -28.85672 -25.26561 -24.67181 -24.13784 -23.26834 -22.10216 -21.35274 -19.95492 -19.18809 -19.01554 -18.69477 -17.76299 -17.74925 -17.52990 -17.09794 -16.61595 -16.31868 -16.08240 -15.75323 -15.57853 -14.91442 -14.86299 -14.77824 -14.64464 -13.98809 -13.93956 -13.80129 -13.67575 -13.59815 -13.27767 -13.15885 -13.12283 -12.88422 -12.66299 -12.56796 -12.47594 -12.16648 -12.06264 -11.88905 -11.78006 -11.51333 -11.41191 -11.36648 -11.33130 -10.78351 -10.47284 -9.98967 -8.30934 -6.35860 -0.97026 -0.30954 0.06293 0.94711 1.36255 1.37784 1.43497 1.49183 1.70299 2.34691 2.36576 2.57622 2.99242 3.04542 3.14514 3.24751 3.58454 3.62868 3.77184 3.92350 3.96244 3.98934 4.00154 4.16096 4.18913 4.26763 4.37062 4.45091 4.56262 4.66609 4.69386 4.73218 4.75368 4.87705 4.92695 4.95386 5.12588 5.26056 5.28331 5.47419 5.48352 5.61664 5.70803 6.24861 6.53288 6.72534 7.28875 8.85561 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.002397 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.193486 B =11678.427675 C =12239.785265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.245 1.245 6 H -0.285 1.285 7 C -0.533 4.533 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.072 3.928 12 O -0.351 6.351 13 C 0.470 3.530 14 O -0.524 6.524 15 C -0.061 4.061 16 H 0.167 0.833 17 C -0.110 4.110 18 C -0.565 4.565 19 S 2.491 3.509 20 O -0.969 6.969 21 O -0.964 6.964 22 C -0.637 4.637 23 C -0.047 4.047 24 C -0.129 4.129 25 C -0.068 4.068 26 C -0.159 4.159 27 C 0.001 3.999 28 H 0.267 0.733 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.186 0.814 38 H 0.182 0.818 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.700 -17.492 1.019 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.168 1.168 6 H -0.210 1.210 7 C -0.571 4.571 8 H 0.055 0.945 9 C -0.048 4.048 10 C -0.130 4.130 11 C -0.001 4.001 12 O -0.268 6.268 13 C 0.313 3.687 14 O -0.412 6.412 15 C -0.079 4.079 16 H 0.184 0.816 17 C -0.148 4.148 18 C -0.699 4.699 19 S 2.675 3.325 20 O -0.967 6.967 21 O -0.961 6.961 22 C -0.723 4.723 23 C -0.066 4.066 24 C -0.147 4.147 25 C -0.086 4.086 26 C -0.178 4.178 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.107 0.893 37 H 0.204 0.796 38 H 0.200 0.800 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 23.547 -17.447 1.239 29.332 hybrid contribution -1.185 1.515 0.341 1.953 sum 22.362 -15.933 1.579 27.502 Atomic orbital electron populations 1.70055 1.08296 1.28238 1.52427 1.25993 0.95600 1.03481 0.94099 0.85691 0.79595 0.78339 0.79239 1.19207 1.16818 1.21043 1.21407 0.91742 0.93316 1.50626 0.94528 1.19454 0.94254 0.93880 0.97172 1.21317 0.90625 0.98253 1.02772 1.23251 0.95199 0.78879 1.02782 1.86523 1.23810 1.33372 1.83064 1.23615 0.80909 0.92410 0.71741 1.90694 1.61007 1.43877 1.45665 1.20126 1.01670 0.92352 0.93760 0.81552 1.21368 0.96159 0.94873 1.02401 1.30151 1.16113 1.04927 1.18686 1.05635 0.74884 0.73617 0.78402 1.93581 1.47322 1.69532 1.86235 1.93567 1.86532 1.31432 1.84546 1.30070 1.14140 1.14757 1.13288 1.21169 0.98808 0.95643 0.90942 1.21645 0.94524 0.97424 1.01152 1.21674 0.96639 0.94067 0.96218 1.21803 1.00194 1.01468 0.94330 1.18898 0.93102 0.94217 0.93779 0.92423 0.95597 0.95871 0.91752 0.91573 0.90701 0.91144 0.84831 0.89278 0.79644 0.80027 0.83580 0.81774 0.82790 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 2 C 0.01 0.30 5.47 84.66 0.46 0.77 16 3 Si 0.95 43.04 27.47 68.60 1.88 44.93 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.53 -29.74 9.66 25.60 0.25 -29.49 16 8 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.30 5.53 30.59 0.17 -3.13 16 11 C 0.07 2.14 5.47 71.98 0.39 2.54 16 12 O -0.35 -9.05 9.42 -51.41 -0.48 -9.53 16 13 C 0.47 10.99 5.31 71.24 0.38 11.37 16 14 O -0.52 -15.45 16.13 21.98 0.35 -15.09 16 15 C -0.06 -0.92 2.40 -12.89 -0.03 -0.95 16 16 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 17 C -0.11 -1.17 4.73 30.43 0.14 -1.03 16 18 C -0.57 -3.02 6.59 72.20 0.48 -2.55 16 19 S 2.49 39.02 5.22 -56.49 -0.29 38.73 16 20 O -0.97 -22.54 17.92 -127.67 -2.29 -24.83 16 21 O -0.96 -19.83 17.81 -127.67 -2.27 -22.10 16 22 C -0.64 -11.80 5.68 22.24 0.13 -11.67 16 23 C -0.05 -0.84 9.48 22.33 0.21 -0.63 16 24 C -0.13 -2.00 10.07 22.21 0.22 -1.78 16 25 C -0.07 -1.16 10.03 22.15 0.22 -0.94 16 26 C -0.16 -3.22 8.95 22.44 0.20 -3.02 16 27 C 0.00 0.02 5.52 -19.95 -0.11 -0.09 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 30 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.17 8.13 -2.38 -0.02 2.15 16 34 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 35 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.29 7.76 -2.39 -0.02 1.27 16 37 H 0.19 -0.16 8.14 -2.38 -0.02 -0.18 16 38 H 0.18 -0.14 8.09 -2.39 -0.02 -0.16 16 39 H 0.15 2.17 8.05 -2.91 -0.02 2.14 16 40 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.13 2.72 6.23 -2.91 -0.02 2.70 16 Total: -1.00 -82.03 361.88 1.41 -80.62 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.97 Total: 6.45 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 3.24 Total: -40.92 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.30 Total: -58.25 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -4.69 Total: -71.56 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.93 kcal Atomic # 16 Polarization: 39.02 SS G_CDS: -0.29 Total: 38.73 kcal Total: -82.03 1.41 -80.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792820644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.937 kcal (2) G-P(sol) polarization free energy of solvation -82.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds