Wall clock time and date at job start Tue Mar 31 2020 21:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46855 * 2 1 4 4 H 1.08995 * 109.47802 * 54.99757 * 3 2 1 5 5 C 1.50697 * 109.47049 * 175.00276 * 3 2 1 6 6 H 1.07996 * 120.00143 * 119.99959 * 5 3 2 7 7 C 1.37879 * 120.00087 * 299.99384 * 5 3 2 8 8 N 1.31515 * 119.99776 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00283 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47136 * 90.00149 * 9 7 5 11 11 H 1.48502 * 109.47026 * 210.00501 * 9 7 5 12 12 H 1.48498 * 109.47020 * 330.00041 * 9 7 5 13 13 O 1.45204 * 109.46905 * 294.99763 * 3 2 1 14 14 C 1.34234 * 116.99820 * 90.00206 * 13 3 2 15 15 O 1.20822 * 120.00039 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99818 * 179.97438 * 14 13 3 17 17 H 1.09004 * 108.55345 * 3.82215 * 16 14 13 18 18 C 1.51838 * 108.60310 * 121.73872 * 16 14 13 19 19 C 1.53622 * 109.06022 * 182.43253 * 18 16 14 20 20 S 1.81775 * 107.01786 * 288.54248 * 19 18 16 21 21 O 1.42103 * 110.64109 * 293.49384 * 20 19 18 22 22 O 1.42103 * 110.73638 * 156.33490 * 20 19 18 23 23 C 1.76579 * 103.65717 * 44.89503 * 20 19 18 24 24 C 1.38797 * 117.86745 * 168.24114 * 23 20 19 25 25 C 1.37926 * 120.66090 * 179.30453 * 24 23 20 26 26 C 1.38277 * 119.40703 * 359.67528 * 25 24 23 27 27 C 1.37699 * 119.90099 * 0.35007 * 26 25 24 28 28 C 1.37537 * 121.87790 * 347.75934 * 23 20 19 29 29 H 1.09002 * 109.46450 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47049 * 300.00075 * 1 2 3 31 31 H 1.08998 * 109.47433 * 60.00208 * 1 2 3 32 32 H 1.09000 * 109.47049 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.47288 * 119.99343 * 2 1 3 34 34 H 0.96997 * 120.00319 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.53926 * 62.55669 * 18 16 14 36 36 H 1.09001 * 109.53516 * 302.30122 * 18 16 14 37 37 H 1.08997 * 109.94123 * 169.16945 * 19 18 16 38 38 H 1.09001 * 110.01867 * 47.95821 * 19 18 16 39 39 H 1.08001 * 119.67330 * 359.31754 * 24 23 20 40 40 H 1.07998 * 120.29902 * 179.70884 * 25 24 23 41 41 H 1.08006 * 120.04862 * 180.02562 * 26 25 24 42 42 H 1.08001 * 119.50604 * 180.14040 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8786 1.2279 8 7 3.4063 0.3368 2.1729 9 14 6.0049 0.8815 1.3817 10 1 6.4416 2.1144 2.0848 11 1 6.4396 -0.3096 2.1549 12 1 6.6135 0.8418 0.0278 13 8 1.6558 2.0916 -1.2408 14 6 0.4726 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2654 16 6 0.0073 3.4224 -2.5085 17 1 0.7351 3.2381 -3.2988 18 6 -1.3248 2.8267 -2.9280 19 6 -1.7796 3.4876 -4.2381 20 16 -2.2711 5.1900 -3.8325 21 8 -3.4274 5.1942 -3.0065 22 8 -2.1842 6.0254 -4.9787 23 6 -0.9750 5.7578 -2.7762 24 6 -0.9216 7.1140 -2.4861 25 6 0.0579 7.6177 -1.6560 26 6 0.9893 6.7571 -1.1048 27 6 0.9361 5.4117 -1.3934 28 6 -0.0452 4.8975 -2.2406 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8901 34 1 3.8294 -0.0615 2.9495 35 1 -2.0667 3.0094 -2.1508 36 1 -1.2121 1.7534 -3.0812 37 1 -2.6285 2.9445 -4.6533 38 1 -0.9587 3.4985 -4.9551 39 1 -1.6545 7.7817 -2.9146 40 1 0.0968 8.6747 -1.4380 41 1 1.7606 7.1403 -0.4530 42 1 1.6654 4.7450 -0.9576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793281857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:03 Heat of formation + Delta-G solvation = -134.635774 kcal Electronic energy + Delta-G solvation = -28070.064053 eV Core-core repulsion = 24107.368958 eV Total energy + Delta-G solvation = -3962.695095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67637 -39.07966 -37.24932 -36.50031 -36.09593 -35.33607 -33.63011 -31.65700 -31.32711 -31.25056 -28.43061 -27.19964 -23.92597 -23.49393 -23.11904 -22.27494 -20.47829 -19.56719 -19.02299 -17.91679 -17.36329 -16.96535 -16.67397 -16.41175 -15.83608 -15.60345 -15.32793 -14.93759 -14.74919 -14.45966 -14.02296 -13.80853 -13.34954 -13.08820 -12.95921 -12.80522 -12.76924 -12.40109 -12.27938 -12.15968 -11.93680 -11.76496 -11.57718 -11.52475 -11.41883 -11.26838 -11.03786 -10.93704 -10.76987 -10.46963 -10.37633 -9.93502 -9.79843 -9.52629 -9.44638 -8.94613 -8.93255 -8.56001 -6.28356 -4.36387 -0.11778 0.69666 1.10723 2.57482 2.67333 3.13657 3.17785 3.24515 3.28758 3.41246 3.43750 4.02188 4.03658 4.23667 4.34117 4.47009 4.68964 4.75045 4.83095 5.00270 5.03885 5.08576 5.14341 5.25548 5.43860 5.46535 5.62128 5.69363 5.72127 5.90910 6.11072 6.12206 6.18343 6.27900 6.33925 6.67947 6.74126 6.83767 7.04513 7.10742 7.50173 7.61466 7.80569 8.03456 8.44883 8.74775 9.29447 10.78215 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.003593 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.033419 B = 7790.187180 C = 8752.921626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.461 3.539 15 O -0.499 6.499 16 C -0.069 4.069 17 H 0.128 0.872 18 C -0.102 4.102 19 C -0.597 4.597 20 S 2.492 3.508 21 O -0.930 6.930 22 O -0.939 6.939 23 C -0.629 4.629 24 C -0.029 4.029 25 C -0.133 4.133 26 C -0.062 4.062 27 C -0.128 4.128 28 C 0.020 3.980 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.267 0.733 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 8.269 -11.501 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.563 4.563 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.302 3.698 15 O -0.388 6.388 16 C -0.089 4.089 17 H 0.146 0.854 18 C -0.140 4.140 19 C -0.727 4.727 20 S 2.672 3.328 21 O -0.927 6.927 22 O -0.936 6.936 23 C -0.716 4.716 24 C -0.048 4.048 25 C -0.151 4.151 26 C -0.080 4.080 27 C -0.146 4.146 28 C 0.018 3.982 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.573 8.606 -11.241 16.550 hybrid contribution 1.785 -0.464 0.665 1.961 sum -6.788 8.141 -10.576 14.974 Atomic orbital electron populations 1.21882 0.98342 0.99196 1.00749 1.22036 0.92654 0.99263 1.03531 1.20757 0.95149 0.88867 0.78348 0.93365 1.21014 0.89502 1.39395 1.06359 0.91292 1.24877 0.99264 0.94630 0.95031 1.69879 1.35486 1.37527 1.09447 0.86291 0.83787 0.77785 0.78402 1.20379 1.20883 1.19565 1.86515 1.33560 1.62206 1.44535 1.22553 0.81448 0.77265 0.88562 1.90662 1.55345 1.57690 1.35054 1.19908 1.00158 0.90767 0.98025 0.85409 1.21226 0.95595 1.02991 0.94236 1.30274 1.13278 1.22328 1.06803 1.05644 0.74869 0.77349 0.74895 1.93624 1.45148 1.86300 1.67628 1.93591 1.86545 1.63717 1.49740 1.29823 1.18585 1.02383 1.20807 1.20715 0.97171 0.92322 0.94612 1.21226 0.95571 1.00290 0.98063 1.21346 0.97262 0.93186 0.96219 1.21649 0.98647 0.96560 0.97764 1.18840 0.93216 0.92059 0.94037 0.94645 0.92704 0.95012 0.93865 0.87215 0.92273 0.88058 0.87400 0.83454 0.83623 0.84901 0.84752 0.84786 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.57 37.16 0.32 -2.63 16 2 C -0.14 -3.20 5.49 -26.73 -0.15 -3.34 16 3 C 0.22 5.47 2.25 -27.88 -0.06 5.41 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -13.84 8.90 -34.44 -0.31 -14.15 16 6 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.00 11.29 55.43 0.63 -23.37 16 9 Si 0.91 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 O -0.35 -7.53 9.79 -39.27 -0.38 -7.91 16 14 C 0.46 8.55 3.18 36.01 0.11 8.66 16 15 O -0.50 -10.60 13.93 -18.75 -0.26 -10.87 16 16 C -0.07 -0.94 2.38 -93.85 -0.22 -1.16 16 17 H 0.13 1.40 8.12 -51.93 -0.42 0.98 16 18 C -0.10 -1.11 4.92 -27.00 -0.13 -1.24 16 19 C -0.60 -4.61 6.58 37.48 0.25 -4.37 16 20 S 2.49 27.86 5.22 -107.50 -0.56 27.30 16 21 O -0.93 -13.28 17.93 -57.52 -1.03 -14.31 16 22 O -0.94 -12.23 17.81 -57.52 -1.02 -13.26 16 23 C -0.63 -8.11 5.68 -39.63 -0.23 -8.34 16 24 C -0.03 -0.35 9.48 -39.49 -0.37 -0.73 16 25 C -0.13 -1.48 10.07 -39.68 -0.40 -1.88 16 26 C -0.06 -0.77 10.03 -39.76 -0.40 -1.17 16 27 C -0.13 -1.89 8.96 -39.32 -0.35 -2.24 16 28 C 0.02 0.27 5.47 -104.75 -0.57 -0.30 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 1.19 7.80 -51.93 -0.40 0.79 16 31 H 0.03 0.60 6.06 -51.93 -0.31 0.28 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 2.82 5.95 -51.93 -0.31 2.51 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.10 1.20 7.94 -51.93 -0.41 0.79 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.15 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.15 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.13 1.32 8.05 -52.49 -0.42 0.90 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.14 2.23 6.80 -52.49 -0.36 1.87 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -33.80 354.86 -10.44 -44.24 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.52 Total: 3.57 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -2.61 Total: -25.88 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.63 Total: -23.37 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -2.70 Total: -46.35 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 27.86 SS G_CDS: -0.56 Total: 27.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.80 -10.44 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793281857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.399 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds