Wall clock time and date at job start Tue Mar 31 2020 21:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46855 * 2 1 4 4 H 1.08995 * 109.47802 * 54.99757 * 3 2 1 5 5 C 1.50697 * 109.47049 * 175.00276 * 3 2 1 6 6 H 1.07996 * 120.00143 * 119.99959 * 5 3 2 7 7 C 1.37879 * 120.00087 * 299.99384 * 5 3 2 8 8 N 1.31515 * 119.99776 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00283 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47136 * 90.00149 * 9 7 5 11 11 H 1.48502 * 109.47026 * 210.00501 * 9 7 5 12 12 H 1.48498 * 109.47020 * 330.00041 * 9 7 5 13 13 O 1.45204 * 109.46905 * 294.99763 * 3 2 1 14 14 C 1.34234 * 116.99820 * 90.00206 * 13 3 2 15 15 O 1.20822 * 120.00039 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99818 * 179.97438 * 14 13 3 17 17 H 1.09004 * 108.55345 * 3.82215 * 16 14 13 18 18 C 1.51838 * 108.60310 * 121.73872 * 16 14 13 19 19 C 1.53622 * 109.06022 * 182.43253 * 18 16 14 20 20 S 1.81775 * 107.01786 * 288.54248 * 19 18 16 21 21 O 1.42103 * 110.64109 * 293.49384 * 20 19 18 22 22 O 1.42103 * 110.73638 * 156.33490 * 20 19 18 23 23 C 1.76579 * 103.65717 * 44.89503 * 20 19 18 24 24 C 1.38797 * 117.86745 * 168.24114 * 23 20 19 25 25 C 1.37926 * 120.66090 * 179.30453 * 24 23 20 26 26 C 1.38277 * 119.40703 * 359.67528 * 25 24 23 27 27 C 1.37699 * 119.90099 * 0.35007 * 26 25 24 28 28 C 1.37537 * 121.87790 * 347.75934 * 23 20 19 29 29 H 1.09002 * 109.46450 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47049 * 300.00075 * 1 2 3 31 31 H 1.08998 * 109.47433 * 60.00208 * 1 2 3 32 32 H 1.09000 * 109.47049 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.47288 * 119.99343 * 2 1 3 34 34 H 0.96997 * 120.00319 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.53926 * 62.55669 * 18 16 14 36 36 H 1.09001 * 109.53516 * 302.30122 * 18 16 14 37 37 H 1.08997 * 109.94123 * 169.16945 * 19 18 16 38 38 H 1.09001 * 110.01867 * 47.95821 * 19 18 16 39 39 H 1.08001 * 119.67330 * 359.31754 * 24 23 20 40 40 H 1.07998 * 120.29902 * 179.70884 * 25 24 23 41 41 H 1.08006 * 120.04862 * 180.02562 * 26 25 24 42 42 H 1.08001 * 119.50604 * 180.14040 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8786 1.2279 8 7 3.4063 0.3368 2.1729 9 14 6.0049 0.8815 1.3817 10 1 6.4416 2.1144 2.0848 11 1 6.4396 -0.3096 2.1549 12 1 6.6135 0.8418 0.0278 13 8 1.6558 2.0916 -1.2408 14 6 0.4726 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2654 16 6 0.0073 3.4224 -2.5085 17 1 0.7351 3.2381 -3.2988 18 6 -1.3248 2.8267 -2.9280 19 6 -1.7796 3.4876 -4.2381 20 16 -2.2711 5.1900 -3.8325 21 8 -3.4274 5.1942 -3.0065 22 8 -2.1842 6.0254 -4.9787 23 6 -0.9750 5.7578 -2.7762 24 6 -0.9216 7.1140 -2.4861 25 6 0.0579 7.6177 -1.6560 26 6 0.9893 6.7571 -1.1048 27 6 0.9361 5.4117 -1.3934 28 6 -0.0452 4.8975 -2.2406 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8901 34 1 3.8294 -0.0615 2.9495 35 1 -2.0667 3.0094 -2.1508 36 1 -1.2121 1.7534 -3.0812 37 1 -2.6285 2.9445 -4.6533 38 1 -0.9587 3.4985 -4.9551 39 1 -1.6545 7.7817 -2.9146 40 1 0.0968 8.6747 -1.4380 41 1 1.7606 7.1403 -0.4530 42 1 1.6654 4.7450 -0.9576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793281857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:02 Heat of formation + Delta-G solvation = -156.387394 kcal Electronic energy + Delta-G solvation = -28071.007274 eV Core-core repulsion = 24107.368958 eV Total energy + Delta-G solvation = -3963.638316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02830 -40.30544 -38.22058 -37.89970 -37.11357 -36.53308 -35.51634 -33.38448 -32.43663 -32.17259 -29.74435 -28.83387 -25.36393 -24.75909 -24.14852 -23.59064 -21.96740 -21.12247 -19.91451 -19.14876 -18.72728 -18.59595 -17.72879 -17.47903 -17.32510 -16.75270 -16.61485 -16.41651 -15.92135 -15.66747 -15.01096 -14.95396 -14.71516 -14.66283 -14.19325 -13.95544 -13.74089 -13.56683 -13.35439 -13.29433 -13.25624 -13.14703 -13.11641 -13.06730 -12.80847 -12.60233 -12.55627 -12.45307 -12.15335 -11.89351 -11.75261 -11.47193 -11.32246 -11.29542 -10.83331 -10.54496 -10.45238 -9.96101 -8.28564 -6.45263 -0.94277 -0.28107 0.09216 1.21046 1.41051 1.42146 1.53418 1.70231 1.84036 2.35430 2.42408 2.58729 3.01331 3.05522 3.18952 3.39204 3.61101 3.76895 3.85370 3.96118 3.98750 4.18044 4.20604 4.28466 4.38010 4.40619 4.46267 4.55813 4.59724 4.67847 4.73697 4.82860 4.88006 4.94577 5.09878 5.14464 5.21277 5.28896 5.38235 5.50287 5.66873 5.72739 5.96375 6.10258 6.58990 6.92391 7.26230 8.77805 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.003593 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.033419 B = 7790.187180 C = 8752.921626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.131 4.131 3 C 0.226 3.774 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.976 3.024 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.262 1.262 13 O -0.357 6.357 14 C 0.460 3.540 15 O -0.531 6.531 16 C -0.063 4.063 17 H 0.157 0.843 18 C -0.109 4.109 19 C -0.565 4.565 20 S 2.499 3.501 21 O -0.967 6.967 22 O -0.959 6.959 23 C -0.639 4.639 24 C -0.044 4.044 25 C -0.127 4.127 26 C -0.069 4.069 27 C -0.159 4.159 28 C 0.008 3.992 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.189 0.811 38 H 0.181 0.819 39 H 0.153 0.847 40 H 0.170 0.830 41 H 0.151 0.849 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 8.309 -13.803 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.800 3.200 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.187 1.187 13 O -0.274 6.274 14 C 0.303 3.697 15 O -0.421 6.421 16 C -0.081 4.081 17 H 0.175 0.825 18 C -0.147 4.147 19 C -0.699 4.699 20 S 2.682 3.318 21 O -0.964 6.964 22 O -0.956 6.956 23 C -0.724 4.724 24 C -0.063 4.063 25 C -0.145 4.145 26 C -0.087 4.087 27 C -0.178 4.178 28 C 0.006 3.994 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.206 0.794 38 H 0.199 0.801 39 H 0.170 0.830 40 H 0.187 0.813 41 H 0.169 0.831 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.635 8.697 -13.543 18.265 hybrid contribution 1.765 -0.424 1.396 2.290 sum -6.870 8.273 -12.147 16.223 Atomic orbital electron populations 1.21753 0.96138 1.00781 1.00364 1.21880 0.94611 0.97973 1.02485 1.20386 0.94460 0.89378 0.78476 0.97566 1.21318 0.90542 1.39937 1.06828 0.91516 1.25739 1.03889 0.93931 0.94452 1.70007 1.37361 1.37889 1.09856 0.85279 0.78121 0.77927 0.78706 1.19958 1.20212 1.18652 1.86495 1.35409 1.62807 1.42652 1.23560 0.79912 0.76178 0.90057 1.90646 1.55925 1.58639 1.36871 1.20095 1.02363 0.89980 0.95705 0.82549 1.21339 0.93511 1.04378 0.95483 1.30151 1.16058 1.17801 1.05841 1.05454 0.73771 0.78857 0.73754 1.93579 1.46777 1.87521 1.68554 1.93562 1.86568 1.65755 1.49705 1.30130 1.18400 1.02779 1.21058 1.21194 0.97804 0.92652 0.94667 1.21630 0.94332 1.01830 0.96755 1.21620 0.98125 0.92523 0.96412 1.21650 0.99227 0.97480 0.99394 1.18883 0.93483 0.92411 0.94577 0.91946 0.94854 0.93615 0.93191 0.89779 0.92093 0.89446 0.85236 0.79361 0.80105 0.82959 0.81269 0.83096 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.57 71.98 0.62 -4.83 16 2 C -0.13 -6.27 5.49 30.60 0.17 -6.10 16 3 C 0.23 11.65 2.25 29.85 0.07 11.72 16 4 H 0.01 0.38 7.16 -2.39 -0.02 0.37 16 5 C -0.55 -29.77 8.90 25.60 0.23 -29.54 16 6 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -50.87 11.29 21.45 0.24 -50.63 16 9 Si 0.98 41.55 29.54 68.60 2.03 43.58 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 O -0.36 -15.65 9.79 -51.46 -0.50 -16.15 16 14 C 0.46 17.34 3.18 71.24 0.23 17.56 16 15 O -0.53 -23.48 13.93 21.97 0.31 -23.17 16 16 C -0.06 -1.62 2.38 -12.88 -0.03 -1.65 16 17 H 0.16 3.04 8.12 -2.38 -0.02 3.02 16 18 C -0.11 -2.07 4.92 30.42 0.15 -1.92 16 19 C -0.57 -6.32 6.58 72.19 0.47 -5.84 16 20 S 2.50 50.96 5.22 -56.49 -0.30 50.67 16 21 O -0.97 -26.74 17.93 -127.67 -2.29 -29.03 16 22 O -0.96 -23.03 17.81 -127.67 -2.27 -25.30 16 23 C -0.64 -15.84 5.68 22.24 0.13 -15.71 16 24 C -0.04 -1.02 9.48 22.33 0.21 -0.81 16 25 C -0.13 -2.66 10.07 22.20 0.22 -2.44 16 26 C -0.07 -1.71 10.03 22.15 0.22 -1.49 16 27 C -0.16 -4.86 8.96 22.44 0.20 -4.66 16 28 C 0.01 0.21 5.47 -19.95 -0.11 0.10 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.48 7.80 -2.39 -0.02 1.46 16 31 H 0.04 1.70 6.06 -2.39 -0.01 1.69 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 4.46 5.95 -2.39 -0.01 4.45 16 34 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.09 1.96 7.94 -2.39 -0.02 1.94 16 36 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.19 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.18 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.15 2.81 8.05 -2.91 -0.02 2.78 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.11 3.83 6.80 -2.91 -0.02 3.81 16 Total: -1.00 -77.47 354.86 1.47 -76.00 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.04 Total: 18.14 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 3.22 Total: -44.10 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.24 Total: -50.63 kcal Atomic # 8 Polarization: -88.90 SS G_CDS: -4.76 Total: -93.66 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.30 Total: 50.67 kcal Total: -77.47 1.47 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793281857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.392 kcal (2) G-P(sol) polarization free energy of solvation -77.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds