Wall clock time and date at job start Tue Mar 31 2020 21:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46696 * 2 1 4 4 H 1.08999 * 109.47168 * 306.02290 * 3 2 1 5 5 C 1.50699 * 109.46732 * 186.02479 * 3 2 1 6 6 H 1.08000 * 119.99822 * 245.54449 * 5 3 2 7 7 C 1.37877 * 120.00354 * 65.54740 * 5 3 2 8 8 N 1.31522 * 119.99655 * 355.31665 * 7 5 3 9 9 Si 1.86794 * 120.00083 * 175.32305 * 7 5 3 10 10 H 1.48499 * 109.47338 * 95.00051 * 9 7 5 11 11 H 1.48503 * 109.46584 * 214.99602 * 9 7 5 12 12 H 1.48501 * 109.47399 * 334.99380 * 9 7 5 13 13 O 1.45202 * 109.46912 * 66.02331 * 3 2 1 14 14 C 1.34226 * 117.00016 * 269.99431 * 13 3 2 15 15 O 1.20818 * 120.00271 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99757 * 180.02562 * 14 13 3 17 17 H 1.08997 * 108.55675 * 23.08536 * 16 14 13 18 18 C 1.51800 * 108.61061 * 140.78842 * 16 14 13 19 19 C 1.53605 * 109.09455 * 182.56122 * 18 16 14 20 20 S 1.81775 * 107.10767 * 288.71841 * 19 18 16 21 21 O 1.42102 * 110.63912 * 156.24759 * 20 19 18 22 22 O 1.42097 * 110.63683 * 293.45001 * 20 19 18 23 23 C 1.76581 * 103.66015 * 44.84923 * 20 19 18 24 24 C 1.38796 * 117.87265 * 167.64368 * 23 20 19 25 25 C 1.37926 * 120.65542 * 179.44187 * 24 23 20 26 26 C 1.38265 * 119.41530 * 359.84551 * 25 24 23 27 27 C 1.37699 * 119.90322 * 0.35885 * 26 25 24 28 28 C 1.37536 * 121.87743 * 347.57964 * 23 20 19 29 29 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47675 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.46986 * 60.00467 * 1 2 3 32 32 H 1.09002 * 109.47261 * 239.99787 * 2 1 3 33 33 H 1.08997 * 109.46716 * 119.99252 * 2 1 3 34 34 H 0.97001 * 119.99791 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46082 * 62.71328 * 18 16 14 36 36 H 1.09002 * 109.59632 * 302.48519 * 18 16 14 37 37 H 1.09004 * 109.94461 * 169.29069 * 19 18 16 38 38 H 1.09003 * 109.94361 * 48.14005 * 19 18 16 39 39 H 1.08001 * 119.66905 * 359.41500 * 24 23 20 40 40 H 1.07998 * 120.29070 * 179.86141 * 25 24 23 41 41 H 1.07999 * 120.05004 * 180.33729 * 26 25 24 42 42 H 1.08000 * 119.51731 * 180.10488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5913 1.9865 -0.8311 5 6 3.5396 1.4452 -0.1491 6 1 4.1618 1.8033 0.6577 7 6 4.1172 0.9905 -1.3156 8 7 3.3665 0.4692 -2.2613 9 14 5.9659 1.1146 -1.5524 10 1 6.6031 -0.1665 -1.1550 11 1 6.2643 1.3938 -2.9801 12 1 6.5001 2.2153 -0.7107 13 8 1.6768 2.0843 1.2509 14 6 0.4941 2.7178 1.2898 15 8 -0.2144 2.7353 0.3113 16 6 0.0500 3.4074 2.5541 17 1 0.9322 3.6410 3.1501 18 6 -0.6353 4.7095 2.1807 19 6 -1.0356 5.4526 3.4640 20 16 -2.4140 4.5303 4.2082 21 8 -2.4930 4.7872 5.6035 22 8 -3.5668 4.5981 3.3802 23 6 -1.8948 2.8460 4.1007 24 6 -2.6111 1.8991 4.8197 25 6 -2.2626 0.5656 4.7682 26 6 -1.1902 0.1736 3.9885 27 6 -0.4774 1.1139 3.2788 28 6 -0.8187 2.4651 3.3336 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.7730 0.1489 -3.0818 35 1 -1.5263 4.4947 1.5908 36 1 0.0479 5.3285 1.5991 37 1 -1.3543 6.4667 3.2224 38 1 -0.1928 5.4828 4.1545 39 1 -3.4493 2.2097 5.4257 40 1 -2.8227 -0.1659 5.3318 41 1 -0.9118 -0.8686 3.9364 42 1 0.3582 0.8006 2.6704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793281868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:16 Heat of formation + Delta-G solvation = -134.626716 kcal Electronic energy + Delta-G solvation = -28259.445948 eV Core-core repulsion = 24296.751246 eV Total energy + Delta-G solvation = -3962.694702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72084 -39.06333 -37.25797 -36.56048 -36.10871 -35.29061 -33.60396 -31.59772 -31.52769 -31.25409 -28.32015 -27.26751 -23.95923 -23.49830 -23.08101 -22.24050 -20.49671 -19.58209 -19.03493 -17.95543 -17.37745 -16.95509 -16.68016 -16.40663 -15.84444 -15.63912 -15.33474 -14.95969 -14.84852 -14.47901 -13.99697 -13.73482 -13.39444 -13.05865 -12.95310 -12.80461 -12.67541 -12.29274 -12.25211 -12.18504 -12.15839 -11.74322 -11.58411 -11.45520 -11.41313 -11.28026 -11.05575 -10.91506 -10.75222 -10.46542 -10.37563 -9.98903 -9.82172 -9.51713 -9.42409 -8.99815 -8.93152 -8.54525 -6.28950 -4.36199 -0.11327 0.67640 1.08465 2.57385 2.67687 3.13072 3.17679 3.25018 3.29317 3.40637 3.42380 4.02283 4.06348 4.25078 4.34258 4.45796 4.68050 4.75855 4.85083 4.97938 5.04011 5.07278 5.14617 5.25739 5.44876 5.50822 5.60832 5.68335 5.77817 5.90419 6.09081 6.11744 6.17320 6.26524 6.32745 6.66885 6.71752 6.83101 7.04394 7.08557 7.49228 7.58890 7.78111 8.02021 8.43437 8.75392 9.29767 10.78345 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003520 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.836994 B = 7951.704731 C = 8629.565459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.220 3.780 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.461 3.539 15 O -0.499 6.499 16 C -0.070 4.070 17 H 0.129 0.871 18 C -0.101 4.101 19 C -0.597 4.597 20 S 2.492 3.508 21 O -0.939 6.939 22 O -0.930 6.930 23 C -0.629 4.629 24 C -0.029 4.029 25 C -0.132 4.132 26 C -0.063 4.063 27 C -0.135 4.135 28 C 0.016 3.984 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 4.871 13.155 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.563 4.563 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.269 6.269 14 C 0.303 3.697 15 O -0.387 6.387 16 C -0.089 4.089 17 H 0.147 0.853 18 C -0.139 4.139 19 C -0.727 4.727 20 S 2.672 3.328 21 O -0.936 6.936 22 O -0.927 6.927 23 C -0.716 4.716 24 C -0.048 4.048 25 C -0.151 4.151 26 C -0.081 4.081 27 C -0.153 4.153 28 C 0.015 3.985 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.503 5.053 12.980 16.862 hybrid contribution 1.694 -0.611 -0.646 1.913 sum -7.808 4.442 12.334 15.259 Atomic orbital electron populations 1.22010 0.98259 0.99321 1.01336 1.22023 0.92674 0.99268 1.03131 1.20773 0.95468 0.88869 0.78082 0.93088 1.21004 0.89546 1.44134 1.01628 0.91255 1.24892 0.99189 0.94508 0.95229 1.69917 1.35653 1.39322 1.07325 0.86289 0.83786 0.78629 0.77627 1.20415 1.20874 1.19551 1.86511 1.33790 1.62368 1.44230 1.22567 0.81352 0.77357 0.88469 1.90653 1.54214 1.57509 1.36373 1.19934 1.00032 0.94176 0.94762 0.85324 1.21197 1.04200 0.93262 0.95233 1.30281 1.19857 1.13115 1.09488 1.05644 0.76647 0.75319 0.75151 1.93591 1.86268 1.84233 1.29523 1.93624 1.43796 1.85686 1.69601 1.29847 1.07045 1.24317 1.10345 1.20721 0.96743 0.92921 0.94436 1.21232 0.98038 0.95809 1.00039 1.21345 0.93483 1.00013 0.93228 1.21867 1.01176 0.92429 0.99843 1.18853 0.92085 0.94696 0.92837 0.94707 0.94218 0.92698 0.87710 0.93916 0.92294 0.87944 0.87386 0.83464 0.83690 0.84891 0.84767 0.84838 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.58 37.16 0.32 -2.80 16 2 C -0.13 -3.06 5.53 -26.73 -0.15 -3.21 16 3 C 0.22 5.43 2.18 -27.88 -0.06 5.37 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.53 -13.85 8.83 -34.44 -0.30 -14.15 16 6 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 7 C 0.06 1.70 5.34 -17.82 -0.10 1.60 16 8 N -0.88 -24.02 11.53 55.43 0.64 -23.38 16 9 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 O -0.35 -7.49 8.88 -39.25 -0.35 -7.84 16 14 C 0.46 8.57 4.13 36.01 0.15 8.72 16 15 O -0.50 -10.57 13.48 -18.74 -0.25 -10.82 16 16 C -0.07 -0.94 2.40 -93.86 -0.22 -1.17 16 17 H 0.13 1.40 8.13 -51.93 -0.42 0.98 16 18 C -0.10 -1.11 4.71 -27.03 -0.13 -1.24 16 19 C -0.60 -4.68 6.57 37.47 0.25 -4.43 16 20 S 2.49 27.77 5.23 -107.50 -0.56 27.20 16 21 O -0.94 -12.20 17.80 -57.51 -1.02 -13.22 16 22 O -0.93 -13.24 17.94 -57.51 -1.03 -14.28 16 23 C -0.63 -7.99 5.68 -39.63 -0.23 -8.21 16 24 C -0.03 -0.35 9.47 -39.49 -0.37 -0.72 16 25 C -0.13 -1.43 10.07 -39.69 -0.40 -1.83 16 26 C -0.06 -0.75 10.03 -39.77 -0.40 -1.15 16 27 C -0.13 -1.94 7.85 -39.32 -0.31 -2.25 16 28 C 0.02 0.23 5.52 -104.75 -0.58 -0.35 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.76 3.68 -51.93 -0.19 0.57 16 31 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 32 H 0.10 2.67 6.23 -51.93 -0.32 2.34 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.10 1.24 7.79 -51.93 -0.40 0.84 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.14 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.13 1.30 8.05 -52.49 -0.42 0.88 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.15 2.31 5.11 -52.49 -0.27 2.05 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -33.66 349.52 -10.18 -43.84 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.31 Total: 3.90 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -2.53 Total: -25.84 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.64 Total: -23.38 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -2.66 Total: -46.16 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 27.77 SS G_CDS: -0.56 Total: 27.20 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.66 -10.18 -43.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793281868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.785 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds