Wall clock time and date at job start Tue Mar 31 2020 21:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46696 * 2 1 4 4 H 1.08999 * 109.47168 * 306.02290 * 3 2 1 5 5 C 1.50699 * 109.46732 * 186.02479 * 3 2 1 6 6 H 1.08000 * 119.99822 * 245.54449 * 5 3 2 7 7 C 1.37877 * 120.00354 * 65.54740 * 5 3 2 8 8 N 1.31522 * 119.99655 * 355.31665 * 7 5 3 9 9 Si 1.86794 * 120.00083 * 175.32305 * 7 5 3 10 10 H 1.48499 * 109.47338 * 95.00051 * 9 7 5 11 11 H 1.48503 * 109.46584 * 214.99602 * 9 7 5 12 12 H 1.48501 * 109.47399 * 334.99380 * 9 7 5 13 13 O 1.45202 * 109.46912 * 66.02331 * 3 2 1 14 14 C 1.34226 * 117.00016 * 269.99431 * 13 3 2 15 15 O 1.20818 * 120.00271 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99757 * 180.02562 * 14 13 3 17 17 H 1.08997 * 108.55675 * 23.08536 * 16 14 13 18 18 C 1.51800 * 108.61061 * 140.78842 * 16 14 13 19 19 C 1.53605 * 109.09455 * 182.56122 * 18 16 14 20 20 S 1.81775 * 107.10767 * 288.71841 * 19 18 16 21 21 O 1.42102 * 110.63912 * 156.24759 * 20 19 18 22 22 O 1.42097 * 110.63683 * 293.45001 * 20 19 18 23 23 C 1.76581 * 103.66015 * 44.84923 * 20 19 18 24 24 C 1.38796 * 117.87265 * 167.64368 * 23 20 19 25 25 C 1.37926 * 120.65542 * 179.44187 * 24 23 20 26 26 C 1.38265 * 119.41530 * 359.84551 * 25 24 23 27 27 C 1.37699 * 119.90322 * 0.35885 * 26 25 24 28 28 C 1.37536 * 121.87743 * 347.57964 * 23 20 19 29 29 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47675 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.46986 * 60.00467 * 1 2 3 32 32 H 1.09002 * 109.47261 * 239.99787 * 2 1 3 33 33 H 1.08997 * 109.46716 * 119.99252 * 2 1 3 34 34 H 0.97001 * 119.99791 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46082 * 62.71328 * 18 16 14 36 36 H 1.09002 * 109.59632 * 302.48519 * 18 16 14 37 37 H 1.09004 * 109.94461 * 169.29069 * 19 18 16 38 38 H 1.09003 * 109.94361 * 48.14005 * 19 18 16 39 39 H 1.08001 * 119.66905 * 359.41500 * 24 23 20 40 40 H 1.07998 * 120.29070 * 179.86141 * 25 24 23 41 41 H 1.07999 * 120.05004 * 180.33729 * 26 25 24 42 42 H 1.08000 * 119.51731 * 180.10488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5913 1.9865 -0.8311 5 6 3.5396 1.4452 -0.1491 6 1 4.1618 1.8033 0.6577 7 6 4.1172 0.9905 -1.3156 8 7 3.3665 0.4692 -2.2613 9 14 5.9659 1.1146 -1.5524 10 1 6.6031 -0.1665 -1.1550 11 1 6.2643 1.3938 -2.9801 12 1 6.5001 2.2153 -0.7107 13 8 1.6768 2.0843 1.2509 14 6 0.4941 2.7178 1.2898 15 8 -0.2144 2.7353 0.3113 16 6 0.0500 3.4074 2.5541 17 1 0.9322 3.6410 3.1501 18 6 -0.6353 4.7095 2.1807 19 6 -1.0356 5.4526 3.4640 20 16 -2.4140 4.5303 4.2082 21 8 -2.4930 4.7872 5.6035 22 8 -3.5668 4.5981 3.3802 23 6 -1.8948 2.8460 4.1007 24 6 -2.6111 1.8991 4.8197 25 6 -2.2626 0.5656 4.7682 26 6 -1.1902 0.1736 3.9885 27 6 -0.4774 1.1139 3.2788 28 6 -0.8187 2.4651 3.3336 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.7730 0.1489 -3.0818 35 1 -1.5263 4.4947 1.5908 36 1 0.0479 5.3285 1.5991 37 1 -1.3543 6.4667 3.2224 38 1 -0.1928 5.4828 4.1545 39 1 -3.4493 2.2097 5.4257 40 1 -2.8227 -0.1659 5.3318 41 1 -0.9118 -0.8686 3.9364 42 1 0.3582 0.8006 2.6704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793281868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:15 Heat of formation + Delta-G solvation = -156.298790 kcal Electronic energy + Delta-G solvation = -28260.385719 eV Core-core repulsion = 24296.751246 eV Total energy + Delta-G solvation = -3963.634473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.06542 -40.25164 -38.24342 -37.95592 -37.11161 -36.48789 -35.48799 -33.42910 -32.51067 -32.15523 -29.60704 -28.90682 -25.43580 -24.69606 -24.08747 -23.57343 -21.98333 -21.12406 -19.92836 -19.18695 -18.70861 -18.60538 -17.71233 -17.45723 -17.33618 -16.76395 -16.65401 -16.37749 -15.96075 -15.72429 -14.93789 -14.86811 -14.84518 -14.62236 -14.06003 -13.82745 -13.79457 -13.61870 -13.41909 -13.29443 -13.25523 -13.17025 -13.11705 -13.02651 -12.82879 -12.56303 -12.55371 -12.41552 -12.15127 -11.89274 -11.75689 -11.46184 -11.31587 -11.29043 -10.90888 -10.51406 -10.42075 -9.92683 -8.28880 -6.44672 -0.94001 -0.26492 0.11354 1.20896 1.42027 1.43162 1.54666 1.71017 1.83961 2.36851 2.43872 2.58407 3.02148 3.09357 3.18550 3.35962 3.62798 3.79403 3.86320 3.98276 3.99312 4.20340 4.22801 4.30454 4.34886 4.38429 4.47875 4.53589 4.61377 4.70972 4.75351 4.81365 4.91501 4.97405 5.06513 5.17009 5.20019 5.31664 5.35034 5.50873 5.64083 5.75587 5.93111 6.09536 6.59934 6.91443 7.26882 8.78370 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003520 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.836994 B = 7951.704731 C = 8629.565459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.225 3.775 4 H 0.011 0.989 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.976 3.024 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.264 1.264 13 O -0.357 6.357 14 C 0.459 3.541 15 O -0.530 6.530 16 C -0.063 4.063 17 H 0.158 0.842 18 C -0.107 4.107 19 C -0.568 4.568 20 S 2.500 3.500 21 O -0.959 6.959 22 O -0.968 6.968 23 C -0.638 4.638 24 C -0.045 4.045 25 C -0.126 4.126 26 C -0.067 4.067 27 C -0.162 4.162 28 C 0.003 3.997 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.186 0.814 38 H 0.180 0.820 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.154 0.846 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 5.685 15.065 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.172 3.828 4 H 0.029 0.971 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.800 3.200 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.188 1.188 13 O -0.273 6.273 14 C 0.302 3.698 15 O -0.420 6.420 16 C -0.082 4.082 17 H 0.175 0.825 18 C -0.145 4.145 19 C -0.701 4.701 20 S 2.682 3.318 21 O -0.956 6.956 22 O -0.965 6.965 23 C -0.723 4.723 24 C -0.063 4.063 25 C -0.145 4.145 26 C -0.085 4.085 27 C -0.180 4.180 28 C 0.002 3.998 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.142 0.858 37 H 0.204 0.796 38 H 0.198 0.802 39 H 0.169 0.831 40 H 0.187 0.813 41 H 0.171 0.829 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.094 5.845 14.926 18.429 hybrid contribution 1.502 -0.859 -1.223 2.119 sum -7.592 4.986 13.703 16.439 Atomic orbital electron populations 1.21886 0.96491 1.00684 1.00759 1.21837 0.94204 0.98148 1.02086 1.20399 0.94748 0.89321 0.78297 0.97124 1.21312 0.90534 1.44639 1.02093 0.91332 1.25763 1.03790 0.93799 0.94748 1.70044 1.37576 1.39780 1.07735 0.85262 0.78160 0.78995 0.77583 1.19529 1.20563 1.18780 1.86496 1.35611 1.62900 1.42288 1.23589 0.79881 0.76340 0.89961 1.90638 1.54664 1.58529 1.38167 1.20111 1.01453 0.94507 0.92131 0.82501 1.21281 1.03743 0.92564 0.96942 1.30163 1.18640 1.13465 1.07820 1.05397 0.77111 0.74814 0.74445 1.93562 1.87041 1.84225 1.30778 1.93579 1.46757 1.85995 1.70146 1.30077 1.06474 1.25619 1.10158 1.21176 0.97181 0.93501 0.94484 1.21637 0.97386 0.96198 0.99247 1.21634 0.93450 1.00661 0.92721 1.21867 1.01580 0.93520 1.01072 1.18860 0.92781 0.94513 0.93608 0.92277 0.93107 0.94939 0.90322 0.93133 0.92132 0.89477 0.85834 0.79638 0.80219 0.83125 0.81337 0.82878 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 8.58 71.98 0.62 -5.33 16 2 C -0.12 -5.94 5.53 30.60 0.17 -5.77 16 3 C 0.23 11.55 2.18 29.85 0.07 11.62 16 4 H 0.01 0.64 7.16 -2.39 -0.02 0.62 16 5 C -0.55 -29.55 8.83 25.60 0.23 -29.32 16 6 H 0.07 3.60 7.82 -2.91 -0.02 3.58 16 7 C 0.02 1.02 5.34 84.65 0.45 1.47 16 8 N -0.91 -50.93 11.53 21.45 0.25 -50.68 16 9 Si 0.98 41.40 29.54 68.60 2.03 43.43 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 O -0.36 -15.51 8.88 -51.38 -0.46 -15.97 16 14 C 0.46 17.30 4.13 71.24 0.29 17.59 16 15 O -0.53 -23.27 13.48 21.99 0.30 -22.97 16 16 C -0.06 -1.63 2.40 -12.90 -0.03 -1.67 16 17 H 0.16 3.05 8.13 -2.39 -0.02 3.04 16 18 C -0.11 -2.14 4.71 30.40 0.14 -2.00 16 19 C -0.57 -6.79 6.57 72.19 0.47 -6.32 16 20 S 2.50 51.20 5.23 -56.49 -0.30 50.91 16 21 O -0.96 -23.06 17.80 -127.68 -2.27 -25.34 16 22 O -0.97 -26.87 17.94 -127.68 -2.29 -29.16 16 23 C -0.64 -15.38 5.68 22.24 0.13 -15.25 16 24 C -0.04 -0.99 9.47 22.33 0.21 -0.78 16 25 C -0.13 -2.47 10.07 22.20 0.22 -2.24 16 26 C -0.07 -1.52 10.03 22.15 0.22 -1.30 16 27 C -0.16 -4.60 7.85 22.44 0.18 -4.42 16 28 C 0.00 0.09 5.52 -19.95 -0.11 -0.02 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 2.01 3.68 -2.39 -0.01 2.00 16 31 H 0.03 1.48 7.85 -2.38 -0.02 1.46 16 32 H 0.08 4.17 6.23 -2.39 -0.01 4.15 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.09 2.05 7.79 -2.39 -0.02 2.04 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.19 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.18 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.15 2.68 8.05 -2.91 -0.02 2.66 16 40 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.12 3.99 5.11 -2.91 -0.01 3.98 16 Total: -1.00 -76.40 349.52 1.56 -74.84 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.05 Total: 18.68 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 3.26 Total: -43.73 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.25 Total: -50.68 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -4.72 Total: -93.44 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 51.20 SS G_CDS: -0.30 Total: 50.91 kcal Total: -76.40 1.56 -74.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793281868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.462 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds