Wall clock time and date at job start Tue Mar 31 2020 21:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99697 * 2 1 4 4 C 1.52996 * 109.47432 * 66.05353 * 3 2 1 5 5 C 1.50692 * 109.47603 * 179.97438 * 4 3 2 6 6 C 1.33390 * 125.20692 * 89.99563 * 5 4 3 7 7 C 1.38417 * 114.92375 * 179.97438 * 6 5 4 8 8 C 1.33396 * 114.92335 * 359.97438 * 7 6 5 9 9 S 1.75884 * 125.20077 * 269.69125 * 5 4 3 10 10 C 1.46903 * 110.99728 * 236.05069 * 2 1 3 11 11 N 1.46502 * 109.47010 * 293.95164 * 10 2 1 12 12 N 1.40170 * 126.14409 * 90.02543 * 11 10 2 13 13 C 1.32236 * 107.75416 * 179.97438 * 12 11 10 14 14 C 1.40115 * 125.92366 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99956 * 174.05952 * 14 13 12 16 16 C 1.40038 * 119.99994 * 354.06650 * 14 13 12 17 17 N 1.30792 * 120.00423 * 5.99360 * 16 14 13 18 18 Si 1.86807 * 119.99846 * 185.99971 * 16 14 13 19 19 H 1.48505 * 109.46995 * 94.98086 * 18 16 14 20 20 H 1.48497 * 109.47016 * 214.97861 * 18 16 14 21 21 H 1.48500 * 109.46991 * 334.97911 * 18 16 14 22 22 N 1.38501 * 108.14971 * 0.02562 * 13 12 11 23 23 C 1.46503 * 125.83413 * 180.02562 * 22 13 12 24 24 C 1.34730 * 108.32575 * 359.73551 * 22 13 12 25 25 S 1.71204 * 125.96729 * 180.26536 * 24 22 13 26 26 H 1.09000 * 109.47370 * 59.99497 * 1 2 3 27 27 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46786 * 299.99686 * 1 2 3 29 29 H 1.09006 * 109.46722 * 186.04848 * 3 2 1 30 30 H 1.08998 * 109.47708 * 306.04620 * 3 2 1 31 31 H 1.09006 * 109.46755 * 299.99475 * 4 3 2 32 32 H 1.08998 * 109.47272 * 59.99001 * 4 3 2 33 33 H 1.08000 * 122.53779 * 359.95745 * 6 5 4 34 34 H 1.08000 * 122.54049 * 180.02562 * 7 6 5 35 35 H 1.07996 * 125.20320 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.47019 * 53.94985 * 10 2 1 37 37 H 1.08994 * 109.47101 * 173.94769 * 10 2 1 38 38 H 0.96995 * 120.00395 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.46980 * 89.99881 * 23 22 13 40 40 H 1.09007 * 109.46786 * 210.00117 * 23 22 13 41 41 H 1.08999 * 109.47125 * 329.99173 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1720 3.4641 1.3186 6 6 1.5182 4.5393 0.8761 7 6 2.2172 5.7297 0.9773 8 6 3.4387 5.6214 1.5024 9 16 3.7587 3.9405 1.9094 10 6 1.9954 -0.7659 -1.1377 11 7 1.6469 -2.1798 -0.9776 12 7 0.4847 -2.8037 -1.4518 13 6 0.5422 -4.0790 -1.1071 14 6 -0.4258 -5.0516 -1.3901 15 1 -0.2383 -6.0870 -1.1468 16 6 -1.6365 -4.6811 -1.9885 17 7 -1.8177 -3.4496 -2.3901 18 14 -2.9929 -5.9458 -2.2131 19 1 -3.9399 -5.8640 -1.0721 20 1 -3.7190 -5.6734 -3.4794 21 1 -2.3980 -7.3055 -2.2662 22 7 1.7249 -4.2864 -0.4168 23 6 2.1795 -5.5621 0.1420 24 6 2.3888 -3.1157 -0.3526 25 16 3.9075 -2.8607 0.3955 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3444 -0.1083 30 1 1.5611 1.9274 -0.8309 31 1 0.5472 2.0845 1.4266 32 1 2.0659 1.5015 2.1491 33 1 0.5191 4.4851 0.4695 34 1 1.8047 6.6747 0.6562 35 1 4.1246 6.4411 1.6575 36 1 1.5610 -0.3871 -2.0628 37 1 3.0796 -0.6610 -1.1758 38 1 -2.6561 -3.1931 -2.8049 39 1 2.7700 -6.0952 -0.6030 40 1 2.7914 -5.3747 1.0245 41 1 1.3154 -6.1652 0.4206 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794637238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:09 Heat of formation + Delta-G solvation = 119.817405 kcal Electronic energy + Delta-G solvation = -24171.151559 eV Core-core repulsion = 20726.828755 eV Total energy + Delta-G solvation = -3444.322803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86609 -38.34362 -37.26990 -34.42949 -33.92816 -32.33251 -30.66927 -28.31708 -27.67936 -26.60370 -26.05037 -24.47750 -23.02734 -21.56345 -20.93566 -20.73479 -19.30647 -17.76482 -17.27154 -16.66399 -16.00857 -15.70942 -15.47094 -15.32103 -14.92750 -14.71015 -14.47994 -13.79504 -13.62734 -13.31358 -12.95755 -12.84284 -12.44615 -12.29871 -12.22160 -12.09435 -11.85053 -11.81581 -11.58127 -11.47453 -11.28719 -11.06577 -10.93821 -10.62051 -10.60757 -10.50110 -10.07074 -9.56359 -9.24432 -8.90964 -8.74024 -8.56268 -8.12902 -7.09141 -6.73789 -6.63535 -5.17240 0.89989 1.55567 1.93921 2.33679 2.60880 2.64495 2.74996 2.88648 2.92510 3.39004 3.49849 3.62388 4.02086 4.27871 4.79902 4.82950 4.93059 5.05227 5.13305 5.28796 5.35597 5.45028 5.53906 5.57480 5.64262 5.76622 5.85257 5.87039 5.93236 6.01498 6.10517 6.11324 6.19584 6.24194 6.41921 6.53713 6.56672 6.77424 6.99941 7.14011 7.16649 7.60234 7.77602 8.21570 8.32511 9.13066 9.88473 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.002798 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.009357 B =10005.757902 C =11454.114287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.071 3.929 4 C -0.047 4.047 5 C -0.161 4.161 6 C -0.147 4.147 7 C -0.133 4.133 8 C -0.225 4.225 9 S 0.106 5.894 10 C 0.329 3.671 11 N -0.378 5.378 12 N -0.345 5.345 13 C 0.375 3.625 14 C -0.437 4.437 15 H 0.098 0.902 16 C 0.077 3.923 17 N -0.738 5.738 18 Si 0.928 3.072 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.259 1.259 22 N -0.517 5.517 23 C 0.100 3.900 24 C 0.481 3.519 25 S -0.706 6.706 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.285 0.715 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 10.763 2.940 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.057 4.057 4 C -0.086 4.086 5 C -0.279 4.279 6 C -0.177 4.177 7 C -0.164 4.164 8 C -0.360 4.360 9 S 0.369 5.631 10 C 0.117 3.883 11 N -0.164 5.164 12 N -0.177 5.177 13 C 0.126 3.874 14 C -0.479 4.479 15 H 0.115 0.885 16 C -0.149 4.149 17 N -0.362 5.362 18 Si 0.751 3.249 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.182 1.182 22 N -0.218 5.218 23 C -0.043 4.043 24 C 0.112 3.888 25 S -0.582 6.582 26 H 0.044 0.956 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.866 10.907 3.828 11.709 hybrid contribution -2.494 0.047 -1.491 2.906 sum -0.628 10.954 2.336 11.218 Atomic orbital electron populations 1.22459 0.86318 1.03973 0.99562 1.61757 1.08907 1.12919 1.43848 1.21943 1.00726 0.87093 0.95984 1.20151 1.01182 0.88221 0.99065 1.24540 0.97709 0.99620 1.06046 1.20134 1.01881 0.91474 1.04220 1.20143 0.94453 0.99274 1.02505 1.25623 1.01477 0.99893 1.09025 1.84505 1.15889 1.00958 1.61749 1.21646 1.00190 0.74838 0.91618 1.49086 1.16468 1.07607 1.43263 1.79326 1.01963 1.04100 1.32265 1.21271 0.84154 0.92657 0.89306 1.18362 0.97718 0.93697 1.38096 0.88452 1.25830 0.99263 0.96512 0.93300 1.69874 1.24915 1.17430 1.23999 0.85960 0.79649 0.80530 0.78773 1.19140 1.19812 1.18245 1.45994 1.18716 1.08854 1.48281 1.21749 1.00847 0.81903 0.99770 1.22871 0.93218 0.83431 0.89248 1.92713 1.08613 1.92308 1.64541 0.95589 0.89657 0.92025 0.90147 0.94414 0.89844 0.89512 0.84465 0.84595 0.82174 0.91786 0.87236 0.90416 0.91595 0.89180 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.22 60.07 0.55 0.98 16 2 N -0.55 -9.51 4.90 -246.85 -1.21 -10.72 16 3 C 0.07 0.99 4.94 -3.83 -0.02 0.97 16 4 C -0.05 -0.58 5.63 -27.89 -0.16 -0.74 16 5 C -0.16 -1.87 5.76 -36.01 -0.21 -2.08 16 6 C -0.15 -1.56 10.05 -41.21 -0.41 -1.98 16 7 C -0.13 -1.28 10.18 -41.21 -0.42 -1.70 16 8 C -0.22 -2.15 11.23 29.04 0.33 -1.82 16 9 S 0.11 1.17 23.33 -107.50 -2.51 -1.34 16 10 C 0.33 6.31 5.92 -63.31 -0.37 5.94 16 11 N -0.38 -8.67 3.33 -65.05 -0.22 -8.89 16 12 N -0.34 -8.54 9.71 31.21 0.30 -8.24 16 13 C 0.38 9.10 7.49 -155.28 -1.16 7.93 16 14 C -0.44 -9.99 8.94 -38.20 -0.34 -10.33 16 15 H 0.10 2.01 7.21 -52.48 -0.38 1.63 16 16 C 0.08 1.71 5.49 -17.32 -0.10 1.61 16 17 N -0.74 -17.30 11.93 55.55 0.66 -16.63 16 18 Si 0.93 16.29 29.57 -169.99 -5.03 11.26 16 19 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 20 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 21 H -0.26 -4.43 7.11 56.52 0.40 -4.02 16 22 N -0.52 -11.70 3.17 -124.66 -0.39 -12.09 16 23 C 0.10 1.80 10.63 59.85 0.64 2.43 16 24 C 0.48 11.46 7.84 -86.94 -0.68 10.78 16 25 S -0.71 -17.48 29.50 -107.50 -3.17 -20.65 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 1.81 6.64 -51.93 -0.34 1.47 16 28 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 29 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 30 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.08 0.99 6.55 -51.93 -0.34 0.65 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 37 H 0.11 2.09 7.43 -51.93 -0.39 1.70 16 38 H 0.28 6.05 8.30 -40.82 -0.34 5.71 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.60 7.62 -51.92 -0.40 1.21 16 41 H 0.08 1.32 7.39 -51.93 -0.38 0.94 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -29.53 370.45 -13.83 -43.36 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.49 Total: 6.37 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: -2.36 Total: 12.00 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.86 Total: -56.58 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Atomic # 16 Polarization: -16.32 SS G_CDS: -5.68 Total: -21.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.53 -13.83 -43.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794637238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.175 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds