Wall clock time and date at job start Tue Mar 31 2020 21:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99697 * 2 1 4 4 C 1.52996 * 109.47432 * 66.05353 * 3 2 1 5 5 C 1.50692 * 109.47603 * 179.97438 * 4 3 2 6 6 C 1.33390 * 125.20692 * 89.99563 * 5 4 3 7 7 C 1.38417 * 114.92375 * 179.97438 * 6 5 4 8 8 C 1.33396 * 114.92335 * 359.97438 * 7 6 5 9 9 S 1.75884 * 125.20077 * 269.69125 * 5 4 3 10 10 C 1.46903 * 110.99728 * 236.05069 * 2 1 3 11 11 N 1.46502 * 109.47010 * 293.95164 * 10 2 1 12 12 N 1.40170 * 126.14409 * 90.02543 * 11 10 2 13 13 C 1.32236 * 107.75416 * 179.97438 * 12 11 10 14 14 C 1.40115 * 125.92366 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99956 * 174.05952 * 14 13 12 16 16 C 1.40038 * 119.99994 * 354.06650 * 14 13 12 17 17 N 1.30792 * 120.00423 * 5.99360 * 16 14 13 18 18 Si 1.86807 * 119.99846 * 185.99971 * 16 14 13 19 19 H 1.48505 * 109.46995 * 94.98086 * 18 16 14 20 20 H 1.48497 * 109.47016 * 214.97861 * 18 16 14 21 21 H 1.48500 * 109.46991 * 334.97911 * 18 16 14 22 22 N 1.38501 * 108.14971 * 0.02562 * 13 12 11 23 23 C 1.46503 * 125.83413 * 180.02562 * 22 13 12 24 24 C 1.34730 * 108.32575 * 359.73551 * 22 13 12 25 25 S 1.71204 * 125.96729 * 180.26536 * 24 22 13 26 26 H 1.09000 * 109.47370 * 59.99497 * 1 2 3 27 27 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46786 * 299.99686 * 1 2 3 29 29 H 1.09006 * 109.46722 * 186.04848 * 3 2 1 30 30 H 1.08998 * 109.47708 * 306.04620 * 3 2 1 31 31 H 1.09006 * 109.46755 * 299.99475 * 4 3 2 32 32 H 1.08998 * 109.47272 * 59.99001 * 4 3 2 33 33 H 1.08000 * 122.53779 * 359.95745 * 6 5 4 34 34 H 1.08000 * 122.54049 * 180.02562 * 7 6 5 35 35 H 1.07996 * 125.20320 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.47019 * 53.94985 * 10 2 1 37 37 H 1.08994 * 109.47101 * 173.94769 * 10 2 1 38 38 H 0.96995 * 120.00395 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.46980 * 89.99881 * 23 22 13 40 40 H 1.09007 * 109.46786 * 210.00117 * 23 22 13 41 41 H 1.08999 * 109.47125 * 329.99173 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1720 3.4641 1.3186 6 6 1.5182 4.5393 0.8761 7 6 2.2172 5.7297 0.9773 8 6 3.4387 5.6214 1.5024 9 16 3.7587 3.9405 1.9094 10 6 1.9954 -0.7659 -1.1377 11 7 1.6469 -2.1798 -0.9776 12 7 0.4847 -2.8037 -1.4518 13 6 0.5422 -4.0790 -1.1071 14 6 -0.4258 -5.0516 -1.3901 15 1 -0.2383 -6.0870 -1.1468 16 6 -1.6365 -4.6811 -1.9885 17 7 -1.8177 -3.4496 -2.3901 18 14 -2.9929 -5.9458 -2.2131 19 1 -3.9399 -5.8640 -1.0721 20 1 -3.7190 -5.6734 -3.4794 21 1 -2.3980 -7.3055 -2.2662 22 7 1.7249 -4.2864 -0.4168 23 6 2.1795 -5.5621 0.1420 24 6 2.3888 -3.1157 -0.3526 25 16 3.9075 -2.8607 0.3955 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3444 -0.1083 30 1 1.5611 1.9274 -0.8309 31 1 0.5472 2.0845 1.4266 32 1 2.0659 1.5015 2.1491 33 1 0.5191 4.4851 0.4695 34 1 1.8047 6.6747 0.6562 35 1 4.1246 6.4411 1.6575 36 1 1.5610 -0.3871 -2.0628 37 1 3.0796 -0.6610 -1.1758 38 1 -2.6561 -3.1931 -2.8049 39 1 2.7700 -6.0952 -0.6030 40 1 2.7914 -5.3747 1.0245 41 1 1.3154 -6.1652 0.4206 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794637238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:08 Heat of formation + Delta-G solvation = 105.765289 kcal Electronic energy + Delta-G solvation = -24171.760904 eV Core-core repulsion = 20726.828755 eV Total energy + Delta-G solvation = -3444.932149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.62824 -39.40394 -38.40177 -36.04474 -35.57504 -33.50206 -32.34288 -29.75923 -28.86917 -28.24539 -27.47278 -25.72321 -24.19347 -23.04524 -22.63723 -22.10058 -20.10588 -19.47500 -18.48775 -18.09508 -17.45572 -17.37769 -16.74786 -16.53035 -16.49383 -16.05291 -15.90772 -15.21678 -14.88811 -14.60556 -14.01772 -13.91800 -13.72623 -13.60165 -13.44681 -13.36492 -13.15306 -13.09128 -12.96933 -12.74975 -12.67643 -12.61819 -12.40277 -11.97645 -11.91316 -11.70426 -11.53588 -11.37768 -10.92394 -10.66383 -9.61610 -9.47586 -9.38979 -8.81148 -8.63679 -8.54843 -6.96360 0.08727 0.54104 0.73673 0.83424 1.14665 1.27902 1.45334 1.60665 1.66344 1.85405 1.86649 2.13067 2.41794 2.84535 3.08661 3.56260 3.87340 3.92066 4.04536 4.11605 4.16173 4.27218 4.35618 4.43407 4.46476 4.56758 4.58452 4.61714 4.71748 4.73139 4.85775 4.91186 4.95966 5.09448 5.11218 5.25675 5.28813 5.40401 5.62250 5.67448 5.73397 5.96797 6.14658 6.48828 6.57595 7.33034 8.24074 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.002798 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.009357 B =10005.757902 C =11454.114287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.559 5.559 3 C 0.077 3.923 4 C -0.036 4.036 5 C -0.181 4.181 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.215 4.215 9 S 0.073 5.927 10 C 0.326 3.674 11 N -0.374 5.374 12 N -0.368 5.368 13 C 0.353 3.647 14 C -0.450 4.450 15 H 0.118 0.882 16 C 0.038 3.962 17 N -0.773 5.773 18 Si 1.004 2.996 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.247 1.247 22 N -0.518 5.518 23 C 0.095 3.905 24 C 0.468 3.532 25 S -0.738 6.738 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.292 0.708 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 11.121 2.701 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.285 5.285 3 C -0.051 4.051 4 C -0.075 4.075 5 C -0.299 4.299 6 C -0.172 4.172 7 C -0.171 4.171 8 C -0.350 4.350 9 S 0.336 5.664 10 C 0.115 3.885 11 N -0.160 5.160 12 N -0.201 5.201 13 C 0.104 3.896 14 C -0.491 4.491 15 H 0.135 0.865 16 C -0.186 4.186 17 N -0.397 5.397 18 Si 0.823 3.177 19 H -0.189 1.189 20 H -0.196 1.196 21 H -0.170 1.170 22 N -0.219 5.219 23 C -0.046 4.046 24 C 0.097 3.903 25 S -0.615 6.615 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.202 0.798 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.561 11.275 3.599 11.849 hybrid contribution -2.110 0.021 -1.446 2.558 sum -1.549 11.296 2.153 11.603 Atomic orbital electron populations 1.22287 0.86206 1.01580 1.00942 1.61736 1.09027 1.14775 1.42935 1.21984 1.00349 0.85333 0.97453 1.19972 1.01464 0.88654 0.97426 1.24420 0.98154 0.99324 1.07958 1.20417 1.02352 0.91501 1.02975 1.20441 0.94370 0.99936 1.02323 1.25948 1.01911 0.99197 1.07944 1.84624 1.16292 1.02989 1.62489 1.21787 1.00180 0.73857 0.92689 1.49416 1.15702 1.08610 1.42250 1.79264 1.02744 1.04931 1.33167 1.21691 0.84924 0.93023 0.89922 1.18895 0.97879 0.94418 1.37944 0.86458 1.26842 1.01164 0.98347 0.92233 1.69958 1.25949 1.19469 1.24368 0.84827 0.76177 0.78138 0.78519 1.18912 1.19622 1.16970 1.46265 1.18122 1.09671 1.47792 1.22027 1.02052 0.80581 0.99972 1.22827 0.93196 0.84289 0.89993 1.92644 1.10020 1.92709 1.66130 0.94935 0.93797 0.89812 0.90639 0.93003 0.89147 0.91151 0.83182 0.82050 0.79767 0.91183 0.87444 0.89772 0.90058 0.89385 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 9.22 127.69 1.18 2.48 16 2 N -0.56 -19.60 4.90 -934.88 -4.58 -24.18 16 3 C 0.08 2.11 4.94 86.30 0.43 2.54 16 4 C -0.04 -0.88 5.63 29.84 0.17 -0.71 16 5 C -0.18 -4.05 5.76 24.59 0.14 -3.91 16 6 C -0.14 -2.74 10.05 21.21 0.21 -2.53 16 7 C -0.14 -2.35 10.18 21.22 0.22 -2.13 16 8 C -0.21 -3.65 11.23 66.72 0.75 -2.90 16 9 S 0.07 1.58 23.33 -56.49 -1.32 0.26 16 10 C 0.33 12.79 5.92 170.80 1.01 13.80 16 11 N -0.37 -17.53 3.33 -359.73 -1.20 -18.73 16 12 N -0.37 -18.60 9.71 -55.17 -0.54 -19.14 16 13 C 0.35 17.19 7.49 133.52 1.00 18.19 16 14 C -0.45 -20.20 8.94 23.16 0.21 -19.99 16 15 H 0.12 4.62 7.21 -2.91 -0.02 4.60 16 16 C 0.04 1.61 5.49 85.28 0.47 2.08 16 17 N -0.77 -36.20 11.93 21.84 0.26 -35.94 16 18 Si 1.00 31.95 29.57 68.60 2.03 33.98 16 19 H -0.26 -8.29 7.11 99.48 0.71 -7.59 16 20 H -0.27 -8.50 7.11 99.48 0.71 -7.80 16 21 H -0.25 -7.32 7.11 99.48 0.71 -6.62 16 22 N -0.52 -23.52 3.17 -548.31 -1.74 -25.26 16 23 C 0.10 3.33 10.63 127.77 1.36 4.69 16 24 C 0.47 22.70 7.84 179.06 1.40 24.10 16 25 S -0.74 -37.21 29.50 -56.49 -1.67 -38.88 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.04 1.90 6.64 -2.39 -0.02 1.88 16 28 H 0.08 2.46 6.47 -2.39 -0.02 2.45 16 29 H 0.08 2.15 7.93 -2.38 -0.02 2.13 16 30 H 0.05 1.29 8.12 -2.39 -0.02 1.27 16 31 H 0.09 2.05 6.55 -2.38 -0.02 2.04 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.07 2.62 8.12 -2.39 -0.02 2.60 16 37 H 0.11 4.22 7.43 -2.39 -0.02 4.20 16 38 H 0.29 12.33 8.30 -92.71 -0.77 11.56 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.09 3.12 7.62 -2.38 -0.02 3.10 16 41 H 0.11 3.21 7.39 -2.39 -0.02 3.19 16 Total: -1.00 -64.09 370.45 0.83 -63.26 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.04 Total: 28.92 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 8.54 Total: 35.70 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -7.80 Total: -123.25 kcal Atomic # 14 Polarization: 31.95 SS G_CDS: 2.03 Total: 33.98 kcal Atomic # 16 Polarization: -35.63 SS G_CDS: -2.98 Total: -38.62 kcal Total: -64.09 0.83 -63.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794637238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.023 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds