Wall clock time and date at job start Tue Mar 31 2020 20:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47067 * 2 1 4 4 C 1.35642 * 116.99542 * 179.97438 * 3 2 1 5 5 C 1.38707 * 120.15670 * 359.97438 * 4 3 2 6 6 C 1.38050 * 120.08763 * 180.02562 * 5 4 3 7 7 C 1.38570 * 120.40558 * 0.02571 * 6 5 4 8 8 C 1.37761 * 120.30688 * 359.95012 * 7 6 5 9 9 N 1.48014 * 120.04814 * 180.02562 * 8 7 6 10 10 O 1.21801 * 120.00195 * 0.02562 * 9 8 7 11 11 O 1.21800 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.39772 * 119.90102 * 0.04793 * 8 7 6 13 13 C 1.47400 * 120.19569 * 180.25291 * 12 8 7 14 14 O 1.21509 * 119.99923 * 269.72346 * 13 12 8 15 15 O 1.34746 * 120.00287 * 89.72236 * 13 12 8 16 16 C 1.45196 * 117.00384 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47599 * 180.02562 * 16 15 13 18 18 O 1.21297 * 119.99387 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00309 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99726 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00761 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99732 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99973 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99970 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47448 * 89.99783 * 24 22 20 26 26 H 1.48501 * 109.46885 * 209.99440 * 24 22 20 27 27 H 1.48495 * 109.46961 * 329.99597 * 24 22 20 28 28 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46720 * 300.00139 * 1 2 3 30 30 H 1.08996 * 109.46871 * 59.99873 * 1 2 3 31 31 H 1.09002 * 109.47141 * 239.99666 * 2 1 3 32 32 H 1.08996 * 109.46871 * 120.00127 * 2 1 3 33 33 H 1.07999 * 119.95499 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.79944 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.84811 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47080 * 300.00139 * 16 15 13 37 37 H 1.08999 * 109.47384 * 59.99603 * 16 15 13 38 38 H 0.96998 * 120.00337 * 359.97438 * 19 17 16 39 39 H 0.96998 * 120.00259 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.1990 0.4271 0.0016 6 6 5.5674 0.6096 0.0027 7 6 6.1046 1.8869 0.0033 8 6 5.2778 2.9888 0.0017 9 7 5.8578 4.3506 0.0018 10 8 7.0669 4.4976 0.0027 11 8 5.1260 5.3242 -0.0001 12 6 3.8905 2.8189 0.0006 13 6 2.9998 3.9934 -0.0067 14 8 2.6271 4.4797 1.0426 15 8 2.5988 4.5277 -1.1769 16 6 1.7227 5.6835 -1.1081 17 6 1.3814 6.1391 -2.5034 18 8 1.8327 5.5480 -3.4617 19 7 0.5757 7.2038 -2.6866 20 6 0.2649 7.6178 -3.9561 21 1 0.6659 7.0911 -4.8094 22 6 -0.5663 8.7153 -4.1449 23 7 -0.8639 9.1125 -5.3617 24 14 -1.2594 9.6269 -2.6691 25 1 -0.3272 10.7139 -2.2760 26 1 -2.5787 10.2099 -3.0224 27 1 -1.4235 8.6815 -1.5358 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7881 -0.5716 0.0024 34 1 6.2232 -0.2485 0.0039 35 1 7.1765 2.0192 0.0045 36 1 0.8078 5.4150 -0.5800 37 1 2.2264 6.4900 -0.5752 38 1 0.2152 7.6767 -1.9203 39 1 -1.4437 9.8788 -5.4936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795712940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:39 Heat of formation + Delta-G solvation = -116.100886 kcal Electronic energy + Delta-G solvation = -29222.183200 eV Core-core repulsion = 24713.998624 eV Total energy + Delta-G solvation = -4508.184576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50078 -41.10899 -39.97723 -38.39212 -38.12580 -36.74138 -36.10722 -33.99548 -32.87383 -32.49719 -31.73506 -30.68653 -28.60375 -27.17927 -25.01014 -24.30177 -24.02986 -22.31830 -21.49609 -19.80046 -19.58124 -18.88329 -18.54846 -18.15421 -17.75816 -17.68035 -16.99952 -16.90376 -16.66124 -15.90528 -15.84192 -15.36637 -14.85114 -14.55418 -14.10682 -13.89983 -13.71395 -13.25562 -13.13338 -12.92950 -12.81094 -12.73071 -12.34712 -12.21738 -12.13942 -11.85049 -11.72969 -11.41169 -11.36796 -11.25990 -11.20321 -10.70801 -10.59165 -10.44768 -10.17663 -9.99322 -9.61244 -9.17523 -8.59657 -8.22970 -6.33479 -3.86003 -0.64640 0.29025 0.97111 1.00594 2.02939 2.36534 2.40005 2.71883 3.04597 3.09684 3.17191 3.63327 3.84438 4.00078 4.08758 4.10577 4.14617 4.30122 4.38066 4.45280 4.49326 4.68114 4.91000 5.06572 5.12151 5.17635 5.19146 5.31832 5.35166 5.44628 5.50986 5.65831 5.68745 5.76065 6.09360 6.42244 6.54296 7.40681 7.49763 7.68085 8.06900 8.54357 8.89693 9.36211 9.72577 10.78916 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003295 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.791133 B = 8495.870381 C = 9872.527698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 O -0.297 6.297 4 C 0.180 3.820 5 C -0.162 4.162 6 C -0.057 4.057 7 C -0.093 4.093 8 C 0.029 3.971 9 N 0.022 4.978 10 O -0.136 6.136 11 O -0.139 6.139 12 C -0.079 4.079 13 C 0.524 3.476 14 O -0.486 6.486 15 O -0.309 6.309 16 C 0.059 3.941 17 C 0.451 3.549 18 O -0.558 6.558 19 N -0.580 5.580 20 C -0.307 4.307 21 H 0.122 0.878 22 C 0.045 3.955 23 N -0.877 5.877 24 Si 0.878 3.122 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.268 1.268 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.374 0.626 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -22.450 15.633 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 O -0.209 6.209 4 C 0.131 3.869 5 C -0.181 4.181 6 C -0.075 4.075 7 C -0.112 4.112 8 C -0.054 4.054 9 N 0.545 4.455 10 O -0.356 6.356 11 O -0.355 6.355 12 C -0.082 4.082 13 C 0.365 3.635 14 O -0.373 6.373 15 O -0.223 6.223 16 C -0.018 4.018 17 C 0.236 3.764 18 O -0.439 6.439 19 N -0.220 5.220 20 C -0.435 4.435 21 H 0.139 0.861 22 C -0.159 4.159 23 N -0.516 5.516 24 Si 0.704 3.296 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.193 1.193 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.207 0.793 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.520 -23.041 15.113 28.842 hybrid contribution -0.514 1.085 1.144 1.659 sum 8.005 -21.956 16.257 28.469 Atomic orbital electron populations 1.21818 0.91669 1.03343 1.04475 1.23072 0.97050 0.80261 1.01939 1.86171 1.16765 1.31173 1.86820 1.18466 0.84250 0.90824 0.93315 1.21668 0.94210 0.98823 1.03387 1.21148 0.94581 0.96612 0.95170 1.20958 1.01704 0.89974 0.98572 1.20757 0.91200 0.83586 1.09825 1.43415 1.01146 1.02642 0.98304 1.94523 0.96546 1.92218 1.52269 1.94651 1.58608 1.29584 1.52694 1.17992 0.90596 0.91906 1.07693 1.20166 0.78385 0.81867 0.83083 1.90869 1.53596 1.59903 1.32955 1.86638 1.60477 1.43768 1.31370 1.22833 0.93596 0.86617 0.98765 1.19152 0.84479 0.83926 0.88805 1.90598 1.55032 1.56536 1.41749 1.42006 1.44068 1.27268 1.08632 1.19422 1.27949 1.12617 0.83489 0.86055 1.25026 0.97086 0.96878 0.96890 1.69615 1.35912 1.26155 1.19933 0.86682 0.79858 0.80750 0.82266 1.19307 1.20023 1.19316 0.89747 0.91119 0.90736 0.90973 0.91232 0.82593 0.82393 0.81739 0.89312 0.88626 0.79334 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.33 5.46 37.16 0.20 0.53 16 3 O -0.30 -3.39 9.59 -18.63 -0.18 -3.56 16 4 C 0.18 1.99 6.70 -38.67 -0.26 1.73 16 5 C -0.16 -1.04 9.03 -39.48 -0.36 -1.39 16 6 C -0.06 -0.30 10.03 -39.53 -0.40 -0.69 16 7 C -0.09 -0.77 9.54 -39.63 -0.38 -1.15 16 8 C 0.03 0.38 6.88 -79.55 -0.55 -0.16 16 9 N 0.02 0.35 4.45 34.16 0.15 0.50 16 10 O -0.14 -2.01 18.44 -29.46 -0.54 -2.56 16 11 O -0.14 -2.61 16.32 -34.73 -0.57 -3.17 16 12 C -0.08 -1.15 5.76 -104.86 -0.60 -1.75 16 13 C 0.52 9.59 4.30 34.46 0.15 9.74 16 14 O -0.49 -9.43 16.78 -23.25 -0.39 -9.82 16 15 O -0.31 -6.36 9.71 -48.39 -0.47 -6.83 16 16 C 0.06 1.18 5.95 36.01 0.21 1.40 16 17 C 0.45 11.07 7.86 -10.99 -0.09 10.99 16 18 O -0.56 -16.03 16.08 -14.12 -0.23 -16.26 16 19 N -0.58 -14.33 5.09 -10.96 -0.06 -14.39 16 20 C -0.31 -8.81 10.16 -14.93 -0.15 -8.96 16 21 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 22 C 0.04 1.24 5.50 -17.46 -0.10 1.14 16 23 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 24 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.07 0.27 7.66 -51.93 -0.40 -0.12 16 33 H 0.16 0.42 6.30 -52.49 -0.33 0.09 16 34 H 0.16 0.18 8.06 -52.49 -0.42 -0.24 16 35 H 0.17 0.99 7.60 -52.49 -0.40 0.59 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.37 8.06 5.76 -40.82 -0.24 7.83 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -38.29 355.77 -6.64 -44.93 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.85 Total: 5.01 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -1.93 Total: 10.82 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.87 Total: -38.76 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -2.38 Total: -42.21 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.29 -6.64 -44.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795712940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.171 kcal (2) G-P(sol) polarization free energy of solvation -38.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds