Wall clock time and date at job start Tue Mar 31 2020 20:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47067 * 2 1 4 4 C 1.35642 * 116.99542 * 179.97438 * 3 2 1 5 5 C 1.38707 * 120.15670 * 359.97438 * 4 3 2 6 6 C 1.38050 * 120.08763 * 180.02562 * 5 4 3 7 7 C 1.38570 * 120.40558 * 0.02571 * 6 5 4 8 8 C 1.37761 * 120.30688 * 359.95012 * 7 6 5 9 9 N 1.48014 * 120.04814 * 180.02562 * 8 7 6 10 10 O 1.21801 * 120.00195 * 0.02562 * 9 8 7 11 11 O 1.21800 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.39772 * 119.90102 * 0.04793 * 8 7 6 13 13 C 1.47400 * 120.19569 * 180.25291 * 12 8 7 14 14 O 1.21509 * 119.99923 * 269.72346 * 13 12 8 15 15 O 1.34746 * 120.00287 * 89.72236 * 13 12 8 16 16 C 1.45196 * 117.00384 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47599 * 180.02562 * 16 15 13 18 18 O 1.21297 * 119.99387 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00309 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99726 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00761 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99732 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99973 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99970 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47448 * 89.99783 * 24 22 20 26 26 H 1.48501 * 109.46885 * 209.99440 * 24 22 20 27 27 H 1.48495 * 109.46961 * 329.99597 * 24 22 20 28 28 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46720 * 300.00139 * 1 2 3 30 30 H 1.08996 * 109.46871 * 59.99873 * 1 2 3 31 31 H 1.09002 * 109.47141 * 239.99666 * 2 1 3 32 32 H 1.08996 * 109.46871 * 120.00127 * 2 1 3 33 33 H 1.07999 * 119.95499 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.79944 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.84811 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47080 * 300.00139 * 16 15 13 37 37 H 1.08999 * 109.47384 * 59.99603 * 16 15 13 38 38 H 0.96998 * 120.00337 * 359.97438 * 19 17 16 39 39 H 0.96998 * 120.00259 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.1990 0.4271 0.0016 6 6 5.5674 0.6096 0.0027 7 6 6.1046 1.8869 0.0033 8 6 5.2778 2.9888 0.0017 9 7 5.8578 4.3506 0.0018 10 8 7.0669 4.4976 0.0027 11 8 5.1260 5.3242 -0.0001 12 6 3.8905 2.8189 0.0006 13 6 2.9998 3.9934 -0.0067 14 8 2.6271 4.4797 1.0426 15 8 2.5988 4.5277 -1.1769 16 6 1.7227 5.6835 -1.1081 17 6 1.3814 6.1391 -2.5034 18 8 1.8327 5.5480 -3.4617 19 7 0.5757 7.2038 -2.6866 20 6 0.2649 7.6178 -3.9561 21 1 0.6659 7.0911 -4.8094 22 6 -0.5663 8.7153 -4.1449 23 7 -0.8639 9.1125 -5.3617 24 14 -1.2594 9.6269 -2.6691 25 1 -0.3272 10.7139 -2.2760 26 1 -2.5787 10.2099 -3.0224 27 1 -1.4235 8.6815 -1.5358 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7881 -0.5716 0.0024 34 1 6.2232 -0.2485 0.0039 35 1 7.1765 2.0192 0.0045 36 1 0.8078 5.4150 -0.5800 37 1 2.2264 6.4900 -0.5752 38 1 0.2152 7.6767 -1.9203 39 1 -1.4437 9.8788 -5.4936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795712940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:39 Heat of formation + Delta-G solvation = -143.716043 kcal Electronic energy + Delta-G solvation = -29223.380683 eV Core-core repulsion = 24713.998624 eV Total energy + Delta-G solvation = -4509.382059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.57933 -42.08863 -41.20849 -40.20146 -38.97522 -37.92231 -37.61000 -36.14613 -33.92488 -33.56053 -33.14598 -31.43510 -30.26231 -28.15806 -26.69223 -25.32839 -24.94337 -23.09981 -22.60595 -21.63460 -20.74868 -20.58826 -20.00428 -19.29691 -18.84738 -18.49738 -18.24629 -18.08327 -17.57746 -17.31959 -17.09857 -16.89073 -16.20500 -15.76323 -15.47853 -15.07684 -14.81973 -14.70723 -14.28960 -14.07981 -14.01144 -13.71309 -13.56027 -13.45276 -13.26472 -13.04359 -12.93704 -12.56748 -12.50083 -12.49435 -12.39246 -12.03574 -12.00851 -11.94798 -11.88039 -11.64366 -10.85753 -10.69109 -10.38838 -9.87739 -8.49869 -6.13286 -1.58356 -0.39451 0.03454 0.07094 0.73256 1.15546 1.27530 1.31195 1.41809 1.68118 1.76124 2.01759 2.17202 2.59942 3.03769 3.24526 3.30271 3.39505 3.50113 3.72063 3.78241 3.84841 3.96706 3.99994 4.01950 4.05246 4.29503 4.44877 4.63477 4.74416 4.78969 4.86497 4.90363 5.01526 5.15519 5.21551 5.42668 5.79422 5.95475 6.22785 6.26046 6.45602 6.70927 7.19381 7.70026 8.66688 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003295 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.791133 B = 8495.870381 C = 9872.527698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.039 3.961 3 O -0.334 6.334 4 C 0.172 3.828 5 C -0.137 4.137 6 C -0.027 4.027 7 C -0.076 4.076 8 C 0.001 3.999 9 N 0.022 4.978 10 O -0.093 6.093 11 O -0.239 6.239 12 C -0.134 4.134 13 C 0.527 3.473 14 O -0.512 6.512 15 O -0.335 6.335 16 C 0.068 3.932 17 C 0.451 3.549 18 O -0.608 6.608 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.061 0.939 22 C -0.004 4.004 23 N -0.922 5.922 24 Si 0.960 3.040 25 H -0.255 1.255 26 H -0.266 1.266 27 H -0.234 1.234 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.205 0.795 34 H 0.220 0.780 35 H 0.193 0.807 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.393 0.607 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.114 -26.043 18.446 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.034 4.034 3 O -0.247 6.247 4 C 0.124 3.876 5 C -0.155 4.155 6 C -0.045 4.045 7 C -0.095 4.095 8 C -0.083 4.083 9 N 0.539 4.461 10 O -0.329 6.329 11 O -0.433 6.433 12 C -0.137 4.137 13 C 0.370 3.630 14 O -0.401 6.401 15 O -0.250 6.250 16 C -0.009 4.009 17 C 0.238 3.762 18 O -0.493 6.493 19 N -0.213 5.213 20 C -0.464 4.464 21 H 0.079 0.921 22 C -0.204 4.204 23 N -0.561 5.561 24 Si 0.779 3.221 25 H -0.179 1.179 26 H -0.191 1.191 27 H -0.157 1.157 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.222 0.778 34 H 0.237 0.763 35 H 0.210 0.790 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.229 0.771 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.502 -26.542 17.945 33.418 hybrid contribution -0.668 1.875 0.171 1.998 sum 8.834 -24.667 18.116 31.854 Atomic orbital electron populations 1.21883 0.92332 1.04709 1.02640 1.23484 0.96703 0.78588 1.04592 1.86143 1.17398 1.34317 1.86884 1.18773 0.84911 0.90650 0.93314 1.22310 0.94230 0.99161 0.99766 1.21927 0.94766 0.96754 0.91069 1.21603 1.02570 0.89523 0.95834 1.21033 0.91380 0.82453 1.13388 1.43872 1.00987 1.03855 0.97393 1.94432 0.96819 1.92759 1.48907 1.94660 1.58900 1.31526 1.58194 1.18088 0.90727 0.91767 1.13121 1.20879 0.77969 0.82401 0.81762 1.90804 1.54865 1.61091 1.33310 1.86628 1.60917 1.43879 1.33601 1.22654 0.95262 0.87697 0.95256 1.19968 0.83027 0.82976 0.90255 1.90560 1.56656 1.58042 1.44071 1.41772 1.44171 1.27502 1.07884 1.19018 1.29872 1.13860 0.83682 0.92061 1.26064 0.96345 0.96976 1.01037 1.69769 1.36354 1.26892 1.23095 0.85443 0.79074 0.79560 0.78048 1.17943 1.19060 1.15746 0.86724 0.92350 0.93198 0.88675 0.87886 0.77792 0.76289 0.78976 0.86497 0.87045 0.77073 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.04 0.39 5.46 71.98 0.39 0.78 16 3 O -0.33 -7.34 9.59 -89.56 -0.86 -8.20 16 4 C 0.17 3.51 6.70 22.86 0.15 3.66 16 5 C -0.14 -0.99 9.03 22.34 0.20 -0.79 16 6 C -0.03 -0.10 10.03 22.30 0.22 0.12 16 7 C -0.08 -0.94 9.54 22.24 0.21 -0.73 16 8 C 0.00 0.02 6.88 36.63 0.25 0.27 16 9 N 0.02 0.72 4.45 -45.85 -0.20 0.51 16 10 O -0.09 -2.71 18.44 18.89 0.35 -2.36 16 11 O -0.24 -9.86 16.32 23.92 0.39 -9.47 16 12 C -0.13 -3.99 5.76 -20.02 -0.12 -4.10 16 13 C 0.53 20.57 4.30 70.23 0.30 20.88 16 14 O -0.51 -21.21 16.78 23.61 0.40 -20.81 16 15 O -0.34 -14.85 9.71 -49.14 -0.48 -15.33 16 16 C 0.07 2.86 5.95 71.24 0.42 3.28 16 17 C 0.45 23.41 7.86 87.66 0.69 24.10 16 18 O -0.61 -37.71 16.08 15.72 0.25 -37.46 16 19 N -0.57 -29.28 5.09 -306.98 -1.56 -30.84 16 20 C -0.34 -20.42 10.16 84.04 0.85 -19.56 16 21 H 0.06 4.38 7.39 -2.91 -0.02 4.36 16 22 C 0.00 -0.21 5.50 84.93 0.47 0.25 16 23 N -0.92 -55.84 13.96 21.67 0.30 -55.53 16 24 Si 0.96 39.86 27.74 68.60 1.90 41.76 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 27 H -0.23 -8.40 6.52 99.48 0.65 -7.76 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.48 7.66 -2.39 -0.02 0.46 16 32 H 0.10 0.31 7.66 -2.39 -0.02 0.29 16 33 H 0.21 -0.50 6.30 -2.91 -0.02 -0.51 16 34 H 0.22 -1.65 8.06 -2.91 -0.02 -1.67 16 35 H 0.19 1.29 7.60 -2.91 -0.02 1.26 16 36 H 0.12 4.16 8.14 -2.38 -0.02 4.14 16 37 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 38 H 0.39 16.80 5.76 -92.71 -0.53 16.26 16 39 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -97.93 355.77 5.83 -92.11 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.54 Total: 18.53 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 4.80 Total: 27.09 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.46 Total: -85.86 kcal Atomic # 8 Polarization: -93.68 SS G_CDS: 0.05 Total: -93.62 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.90 Total: 41.76 kcal Total: -97.93 5.83 -92.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795712940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.610 kcal (2) G-P(sol) polarization free energy of solvation -97.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds