Wall clock time and date at job start Tue Mar 31 2020 20:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35632 * 117.00028 * 2 1 4 4 C 1.40235 * 120.15572 * 270.25150 * 3 2 1 5 5 C 1.47397 * 120.19613 * 359.97438 * 4 3 2 6 6 O 1.21510 * 120.00373 * 0.27434 * 5 4 3 7 7 O 1.34759 * 119.99953 * 180.27513 * 5 4 3 8 8 C 1.45191 * 116.99904 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47116 * 179.97438 * 8 7 5 10 10 O 1.21279 * 119.99797 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00153 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99902 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47234 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99718 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00218 * 180.02562 * 13 12 11 16 16 N 1.31524 * 119.99969 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 60.00040 * 17 15 13 19 19 H 1.48504 * 109.47329 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46960 * 299.99833 * 17 15 13 21 21 C 1.39732 * 119.60297 * 180.25358 * 4 3 2 22 22 C 1.37801 * 119.90637 * 359.74793 * 21 4 3 23 23 C 1.38528 * 120.30584 * 359.97438 * 22 21 4 24 24 C 1.38096 * 120.40193 * 0.02562 * 23 22 21 25 25 N 1.48020 * 119.95464 * 179.97438 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72330 * 25 24 23 28 28 H 1.08996 * 109.46849 * 300.00125 * 1 2 3 29 29 H 1.09006 * 109.46743 * 59.99947 * 1 2 3 30 30 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47570 * 300.00071 * 8 7 5 32 32 H 1.09007 * 109.47185 * 60.00223 * 8 7 5 33 33 H 0.96995 * 119.99701 * 359.97438 * 11 9 8 34 34 H 1.09003 * 109.47020 * 299.99892 * 12 11 9 35 35 H 1.08998 * 109.47094 * 59.99652 * 12 11 9 36 36 H 0.97000 * 119.99795 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.04641 * 179.76949 * 21 4 3 38 38 H 1.07999 * 119.85077 * 179.97438 * 22 21 4 39 39 H 1.07999 * 119.79960 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 2.3600 1.8386 -1.2126 5 6 2.0244 1.1912 -2.4935 6 8 1.4687 0.1107 -2.5011 7 8 2.3340 1.7977 -3.6564 8 6 1.9743 1.1019 -4.8789 9 6 2.3950 1.9261 -6.0684 10 8 2.9435 2.9949 -5.9021 11 7 2.1608 1.4759 -7.3170 12 6 2.5692 2.2774 -8.4733 13 6 2.1960 1.5551 -9.7422 14 1 1.7034 0.5953 -9.6923 15 6 2.4834 2.1196 -10.9668 16 7 3.0828 3.2888 -11.0275 17 14 2.0202 1.2247 -12.5397 18 1 0.5502 1.0171 -12.5765 19 1 2.4343 2.0371 -13.7118 20 1 2.7072 -0.0911 -12.5812 21 6 2.9991 3.0811 -1.1991 22 6 3.3105 3.6806 0.0020 23 6 2.9923 3.0574 1.1975 24 6 2.3606 1.8294 1.1990 25 7 2.0257 1.1721 2.4823 26 8 2.3077 1.7141 3.5360 27 8 1.4640 0.0913 2.4846 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.4785 0.1360 -4.9091 32 1 0.8953 0.9495 -4.9063 33 1 1.7218 0.6212 -7.4500 34 1 2.0645 3.2430 -8.4425 35 1 3.6481 2.4303 -8.4465 36 1 3.2847 3.6861 -11.8891 37 1 3.2485 3.5710 -2.1288 38 1 3.8049 4.6407 0.0113 39 1 3.2398 3.5348 2.1341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796307938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:18 Heat of formation + Delta-G solvation = -144.230542 kcal Electronic energy + Delta-G solvation = -28193.363959 eV Core-core repulsion = 23683.959590 eV Total energy + Delta-G solvation = -4509.404369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.43180 -42.14556 -40.97175 -40.17474 -38.93353 -37.65150 -37.52256 -36.18704 -34.42295 -33.61597 -32.18467 -30.80987 -28.75772 -28.29192 -27.49986 -25.78977 -24.53686 -23.57439 -22.49986 -21.66512 -20.72244 -19.85606 -19.29204 -19.03276 -18.74692 -18.53835 -17.99492 -17.95996 -17.40264 -17.13506 -16.92116 -16.87166 -16.26529 -16.13933 -15.97460 -15.12204 -14.79896 -14.61560 -14.27101 -14.00610 -13.98786 -13.67008 -13.60824 -13.57180 -12.96547 -12.84537 -12.75688 -12.69147 -12.37793 -12.27922 -12.24878 -12.00673 -11.91825 -11.52718 -11.35455 -10.98327 -10.93280 -10.80905 -10.41700 -9.93443 -8.29983 -6.46230 -1.41563 -0.93127 0.05370 0.16023 1.01737 1.10200 1.44618 1.47290 1.53781 1.55671 1.91734 2.25759 2.30641 2.48293 3.05361 3.12009 3.25995 3.40167 3.63218 3.67128 3.70952 3.94229 4.02233 4.06482 4.15585 4.25878 4.42089 4.62934 4.70720 4.76977 4.98488 5.01981 5.09480 5.19575 5.22362 5.40907 5.61792 5.82027 5.92320 6.35405 6.41878 6.62384 6.76242 7.19710 7.34285 8.81580 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.031308 B = 0.001947 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.135440 B =14376.365837 C =15180.330787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.328 6.328 3 C 0.215 3.785 4 C -0.165 4.165 5 C 0.511 3.489 6 O -0.499 6.499 7 O -0.335 6.335 8 C 0.063 3.937 9 C 0.502 3.498 10 O -0.580 6.580 11 N -0.699 5.699 12 C 0.267 3.733 13 C -0.558 4.558 14 H 0.085 0.915 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.983 3.017 18 H -0.263 1.263 19 H -0.287 1.287 20 H -0.263 1.263 21 C 0.012 3.988 22 C -0.112 4.112 23 C 0.005 3.995 24 C -0.101 4.101 25 N 0.034 4.966 26 O -0.157 6.157 27 O -0.177 6.177 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.412 0.588 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.269 0.731 37 H 0.175 0.825 38 H 0.206 0.794 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 -1.525 24.750 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.244 6.244 3 C 0.168 3.832 4 C -0.168 4.168 5 C 0.355 3.645 6 O -0.387 6.387 7 O -0.251 6.251 8 C -0.014 4.014 9 C 0.287 3.713 10 O -0.460 6.460 11 N -0.351 5.351 12 C 0.145 3.855 13 C -0.596 4.596 14 H 0.103 0.897 15 C -0.194 4.194 16 N -0.567 5.567 17 Si 0.806 3.194 18 H -0.187 1.187 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.006 4.006 22 C -0.129 4.129 23 C -0.014 4.014 24 C -0.185 4.185 25 N 0.551 4.449 26 O -0.374 6.374 27 O -0.389 6.389 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.249 0.751 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.078 0.922 37 H 0.192 0.808 38 H 0.223 0.777 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.643 -0.881 24.067 24.228 hybrid contribution -0.511 -0.841 -0.793 1.264 sum -3.154 -1.722 23.274 23.550 Atomic orbital electron populations 1.23071 0.74769 1.05700 1.00189 1.85957 1.22703 1.21897 1.93805 1.18482 0.91003 0.84462 0.89261 1.19382 1.10270 0.98419 0.88720 1.20806 0.76107 0.83284 0.84258 1.90904 1.38984 1.20898 1.87948 1.86543 1.74974 1.49566 1.13975 1.22795 1.04249 0.95267 0.79092 1.20579 0.79390 0.86441 0.84875 1.90679 1.44337 1.24577 1.86417 1.46048 1.59784 1.24355 1.04865 1.18620 0.93631 0.90567 0.82666 1.21585 1.40848 1.06589 0.90576 0.89687 1.26016 0.94365 0.95652 1.03414 1.70117 1.41472 1.18058 1.27030 0.85237 0.79144 0.78265 0.76763 1.18740 1.21215 1.18783 1.22316 0.86253 0.89724 1.02283 1.21758 1.00074 1.02836 0.88274 1.21791 0.87718 0.88462 1.03429 1.21639 1.15700 0.99052 0.82130 1.43524 0.98270 1.00472 1.02667 1.94507 1.56629 1.66296 1.19974 1.94612 1.41779 1.08059 1.94404 0.93119 0.93158 0.86301 0.85752 0.85487 0.75142 0.98765 0.98839 0.92211 0.80750 0.77700 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 9.80 113.37 1.11 2.16 16 2 O -0.33 -8.02 7.25 -59.79 -0.43 -8.45 16 3 C 0.22 4.51 5.72 22.86 0.13 4.64 16 4 C -0.17 -3.20 5.89 -20.02 -0.12 -3.31 16 5 C 0.51 12.35 7.89 70.23 0.55 12.91 16 6 O -0.50 -13.61 13.77 26.80 0.37 -13.24 16 7 O -0.34 -8.82 9.01 -50.31 -0.45 -9.27 16 8 C 0.06 1.59 5.95 71.24 0.42 2.02 16 9 C 0.50 18.33 7.91 87.66 0.69 19.03 16 10 O -0.58 -26.56 16.50 15.77 0.26 -26.30 16 11 N -0.70 -27.01 5.55 -466.78 -2.59 -29.60 16 12 C 0.27 13.81 5.43 85.63 0.46 14.27 16 13 C -0.56 -28.91 9.28 25.60 0.24 -28.67 16 14 H 0.09 3.94 7.60 -2.91 -0.02 3.92 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 17 Si 0.98 40.85 29.54 68.60 2.03 42.88 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.29 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 21 C 0.01 0.15 9.61 22.53 0.22 0.37 16 22 C -0.11 -0.67 10.02 22.24 0.22 -0.44 16 23 C 0.00 0.04 9.54 22.31 0.21 0.26 16 24 C -0.10 -1.79 6.86 36.44 0.25 -1.54 16 25 N 0.03 0.76 4.45 -46.30 -0.21 0.55 16 26 O -0.16 -3.38 18.44 18.88 0.35 -3.03 16 27 O -0.18 -4.60 16.02 25.61 0.41 -4.19 16 28 H 0.05 0.89 7.46 -2.39 -0.02 0.87 16 29 H 0.05 0.94 7.47 -2.38 -0.02 0.92 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.41 12.75 8.32 -92.71 -0.77 11.98 16 34 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 35 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.18 2.03 7.61 -2.91 -0.02 2.01 16 38 H 0.21 -0.45 8.06 -2.91 -0.02 -0.48 16 39 H 0.19 0.72 7.59 -2.91 -0.02 0.70 16 Total: -1.00 -77.51 357.61 5.24 -72.27 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.36 Total: 9.65 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 4.86 Total: 22.44 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -2.51 Total: -82.76 kcal Atomic # 8 Polarization: -64.98 SS G_CDS: 0.50 Total: -64.48 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -77.51 5.24 -72.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796307938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.956 kcal (2) G-P(sol) polarization free energy of solvation -77.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds