Wall clock time and date at job start Tue Mar 31 2020 20:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00196 * 2 1 4 4 H 1.48498 * 109.46936 * 264.64104 * 3 2 1 5 5 H 1.48498 * 109.47262 * 24.64042 * 3 2 1 6 6 H 1.48494 * 109.47134 * 144.64246 * 3 2 1 7 7 C 1.37874 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99993 * 4.85487 * 7 2 1 9 9 C 1.50701 * 120.00208 * 184.85352 * 7 2 1 10 10 H 1.09003 * 109.46376 * 34.72690 * 9 7 2 11 11 C 1.53001 * 109.47278 * 154.72325 * 9 7 2 12 12 C 1.50705 * 109.47238 * 295.00373 * 11 9 7 13 13 O 1.20826 * 119.99843 * 0.02562 * 12 11 9 14 14 O 1.34223 * 120.00062 * 180.02562 * 12 11 9 15 15 C 1.45197 * 117.00204 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.01242 * 28.61917 * 15 14 12 17 17 C 1.53878 * 110.02984 * 149.99664 * 15 14 12 18 18 C 1.54166 * 108.70228 * 166.47114 * 17 15 14 19 19 S 1.82916 * 105.08914 * 332.09461 * 18 17 15 20 20 O 1.42094 * 109.35226 * 115.52085 * 19 18 17 21 21 O 1.42098 * 109.35189 * 248.72688 * 19 18 17 22 22 C 1.55047 * 110.02703 * 267.19222 * 15 14 12 23 23 C 1.50697 * 109.46988 * 274.72571 * 9 7 2 24 24 C 1.38236 * 119.99923 * 115.53591 * 23 9 7 25 25 C 1.38234 * 119.99929 * 179.97438 * 24 23 9 26 26 C 1.38236 * 119.99961 * 359.97438 * 25 24 23 27 27 C 1.38235 * 120.00111 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99928 * 0.02562 * 27 26 25 29 29 H 0.97004 * 119.99336 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46944 * 54.99966 * 11 9 7 31 31 H 1.08998 * 109.47134 * 175.00146 * 11 9 7 32 32 H 1.09004 * 109.64891 * 286.32630 * 17 15 14 33 33 H 1.08998 * 109.64355 * 46.62295 * 17 15 14 34 34 H 1.09004 * 110.31868 * 91.00142 * 18 17 15 35 35 H 1.09003 * 110.31783 * 213.19260 * 18 17 15 36 36 H 1.08997 * 110.78859 * 316.54041 * 22 15 14 37 37 H 1.08998 * 110.79019 * 80.00860 * 22 15 14 38 38 H 1.08004 * 120.00111 * 359.97224 * 24 23 9 39 39 H 1.08000 * 119.99631 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.99486 * 179.70283 * 26 25 24 41 41 H 1.07995 * 119.99608 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.00088 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6100 1.9810 -1.3940 5 1 1.3947 2.6827 0.5837 6 1 3.4856 1.4754 0.8102 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0801 9 6 3.5075 -1.1966 0.1099 10 1 3.8256 -0.3783 0.7560 11 6 3.9729 -2.5269 0.7052 12 6 3.4690 -2.6478 2.1203 13 8 2.8052 -1.7610 2.6030 14 8 3.7575 -3.7404 2.8445 15 6 3.2396 -3.7886 4.2001 16 1 2.3175 -3.2112 4.2679 17 6 2.9790 -5.2478 4.6132 18 6 2.7626 -5.2985 6.1388 19 16 3.7117 -3.8823 6.8017 20 8 2.8163 -2.9509 7.3931 21 8 4.8240 -4.3661 7.5419 22 6 4.2922 -3.2282 5.1909 23 6 4.1120 -1.0199 -1.2592 24 6 4.8539 0.1106 -1.5465 25 6 5.4088 0.2723 -2.8022 26 6 5.2224 -0.6966 -3.7703 27 6 4.4814 -1.8276 -3.4826 28 6 3.9264 -1.9894 -2.2270 29 1 -0.4849 0.8401 0.0004 30 1 3.5797 -3.3496 0.1080 31 1 5.0623 -2.5646 0.7030 32 1 2.0897 -5.6196 4.1043 33 1 3.8372 -5.8636 4.3442 34 1 1.7041 -5.1885 6.3748 35 1 3.1464 -6.2345 6.5446 36 1 5.2863 -3.6078 4.9548 37 1 4.2827 -2.1383 5.1900 38 1 4.9999 0.8674 -0.7900 39 1 5.9881 1.1558 -3.0268 40 1 5.6520 -0.5679 -4.7528 41 1 4.3355 -2.5843 -4.2392 42 1 3.3472 -2.8727 -2.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796665026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:36 Heat of formation + Delta-G solvation = -126.439295 kcal Electronic energy + Delta-G solvation = -27047.198413 eV Core-core repulsion = 23084.858744 eV Total energy + Delta-G solvation = -3962.339669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22553 -38.74134 -37.30473 -37.03285 -36.25512 -34.80090 -34.27419 -31.83420 -30.34735 -30.08971 -29.18803 -26.51072 -25.33322 -22.98815 -22.12578 -21.69463 -20.73424 -19.35949 -19.11476 -17.63090 -17.20219 -17.15858 -16.53406 -16.22038 -16.01142 -15.50052 -15.42349 -14.72796 -14.60433 -14.36605 -14.06467 -14.01840 -13.44483 -13.02181 -12.86554 -12.84624 -12.69690 -12.45187 -12.39506 -12.29330 -12.16970 -12.05481 -11.99071 -11.40068 -11.23569 -11.11601 -10.85988 -10.81756 -10.68571 -10.49013 -10.32541 -10.06786 -9.80744 -9.67581 -9.29921 -8.61021 -8.30466 -7.91880 -6.11867 -4.10478 -0.27763 1.98578 2.03312 2.18765 2.78795 2.90792 3.30611 3.31437 3.34585 3.37886 3.74009 4.09883 4.27360 4.29453 4.39347 4.44975 4.50628 4.65347 5.12816 5.18034 5.20778 5.34872 5.36977 5.41551 5.45533 5.58035 5.60989 5.65534 5.76346 5.81053 5.92191 6.10685 6.19419 6.33483 6.57614 6.67977 6.81100 6.87360 7.04688 7.13919 7.44750 7.56545 7.67940 8.34010 8.39085 8.85765 9.50263 11.00686 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.003110 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.754300 B = 9000.763227 C = 9746.184225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.868 3.132 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.494 4.494 8 H 0.074 0.926 9 C 0.044 3.956 10 H 0.057 0.943 11 C -0.086 4.086 12 C 0.455 3.545 13 O -0.462 6.462 14 O -0.350 6.350 15 C 0.090 3.910 16 H 0.111 0.889 17 C -0.113 4.113 18 C -0.589 4.589 19 S 2.398 3.602 20 O -0.929 6.929 21 O -0.936 6.936 22 C -0.613 4.613 23 C -0.040 4.040 24 C -0.140 4.140 25 C -0.122 4.122 26 C -0.148 4.148 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.264 0.736 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.897 -10.614 5.002 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.118 4.118 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.025 3.975 10 H 0.075 0.925 11 C -0.123 4.123 12 C 0.296 3.704 13 O -0.344 6.344 14 O -0.269 6.269 15 C 0.032 3.968 16 H 0.129 0.871 17 C -0.151 4.151 18 C -0.718 4.718 19 S 2.579 3.421 20 O -0.926 6.926 21 O -0.933 6.933 22 C -0.742 4.742 23 C -0.041 4.041 24 C -0.158 4.158 25 C -0.140 4.140 26 C -0.166 4.166 27 C -0.142 4.142 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.637 -9.891 6.121 15.105 hybrid contribution 0.024 0.877 -0.894 1.253 sum 9.660 -9.014 5.227 14.209 Atomic orbital electron populations 1.69876 1.06277 1.27049 1.49769 1.24873 0.94552 0.98825 0.93546 0.87055 0.80318 0.84143 0.78883 1.19583 1.21755 1.18804 1.20621 0.87038 0.94702 1.50743 0.90801 1.18354 0.97461 0.92774 0.88918 0.92517 1.21432 1.00551 1.02560 0.87800 1.24076 0.78079 0.79286 0.88952 1.90732 1.33652 1.39216 1.70798 1.86607 1.71156 1.44774 1.24313 1.23083 0.96381 0.96373 0.80939 0.87115 1.21880 1.06050 0.95566 0.91633 1.30450 1.15746 1.20041 1.05602 1.08803 0.76933 0.78380 0.77953 1.93657 1.64597 1.60318 1.74016 1.93619 1.51209 1.80458 1.68021 1.31179 1.09826 1.13130 1.20042 1.20636 0.91792 0.93021 0.98624 1.21075 0.99350 0.98453 0.96958 1.20972 1.00508 0.98639 0.93851 1.20884 1.01678 0.95343 0.98720 1.21056 0.98601 0.97703 0.96798 1.20938 0.99029 0.99720 0.92760 0.92592 0.88320 0.89750 0.87883 0.88392 0.83982 0.83769 0.83424 0.83699 0.87190 0.87209 0.87245 0.87001 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.96 55.43 0.77 -26.16 16 2 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 3 Si 0.87 21.68 24.76 -169.99 -4.21 17.48 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.23 5.95 56.52 0.34 -5.90 16 7 C -0.49 -12.92 7.19 -34.44 -0.25 -13.17 16 8 H 0.07 2.08 8.05 -52.48 -0.42 1.66 16 9 C 0.04 0.95 1.24 -92.92 -0.12 0.83 16 10 H 0.06 1.31 5.27 -51.93 -0.27 1.04 16 11 C -0.09 -1.49 4.95 -27.88 -0.14 -1.62 16 12 C 0.46 8.31 7.70 36.01 0.28 8.58 16 13 O -0.46 -10.27 14.20 -18.75 -0.27 -10.54 16 14 O -0.35 -5.06 9.95 -39.24 -0.39 -5.45 16 15 C 0.09 1.06 2.91 -25.19 -0.07 0.99 16 16 H 0.11 1.48 7.15 -51.93 -0.37 1.11 16 17 C -0.11 -0.89 6.09 -25.66 -0.16 -1.04 16 18 C -0.59 -3.73 7.26 37.77 0.27 -3.46 16 19 S 2.40 22.66 6.11 -107.50 -0.66 22.01 16 20 O -0.93 -12.59 18.14 -57.71 -1.05 -13.63 16 21 O -0.94 -11.31 18.14 -57.71 -1.05 -12.36 16 22 C -0.61 -6.13 7.01 38.24 0.27 -5.86 16 23 C -0.04 -0.80 4.30 -104.63 -0.45 -1.25 16 24 C -0.14 -2.68 8.15 -39.58 -0.32 -3.00 16 25 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 26 C -0.15 -2.31 10.05 -39.58 -0.40 -2.70 16 27 C -0.12 -1.98 10.05 -39.58 -0.40 -2.37 16 28 C -0.11 -1.93 8.94 -39.58 -0.35 -2.28 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.10 1.58 7.34 -51.93 -0.38 1.20 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.15 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.14 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.11 2.08 6.76 -52.48 -0.35 1.73 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.12 2.05 7.38 -52.49 -0.39 1.66 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -36.95 358.20 -9.39 -46.34 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.62 Total: 3.40 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -2.33 Total: -26.48 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.16 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -2.75 Total: -41.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.21 Total: 17.48 kcal Atomic # 16 Polarization: 22.66 SS G_CDS: -0.66 Total: 22.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.95 -9.39 -46.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796665026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.102 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds