Wall clock time and date at job start Tue Mar 31 2020 20:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00196 * 2 1 4 4 H 1.48498 * 109.46936 * 264.64104 * 3 2 1 5 5 H 1.48498 * 109.47262 * 24.64042 * 3 2 1 6 6 H 1.48494 * 109.47134 * 144.64246 * 3 2 1 7 7 C 1.37874 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99993 * 4.85487 * 7 2 1 9 9 C 1.50701 * 120.00208 * 184.85352 * 7 2 1 10 10 H 1.09003 * 109.46376 * 34.72690 * 9 7 2 11 11 C 1.53001 * 109.47278 * 154.72325 * 9 7 2 12 12 C 1.50705 * 109.47238 * 295.00373 * 11 9 7 13 13 O 1.20826 * 119.99843 * 0.02562 * 12 11 9 14 14 O 1.34223 * 120.00062 * 180.02562 * 12 11 9 15 15 C 1.45197 * 117.00204 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.01242 * 28.61917 * 15 14 12 17 17 C 1.53878 * 110.02984 * 149.99664 * 15 14 12 18 18 C 1.54166 * 108.70228 * 166.47114 * 17 15 14 19 19 S 1.82916 * 105.08914 * 332.09461 * 18 17 15 20 20 O 1.42094 * 109.35226 * 115.52085 * 19 18 17 21 21 O 1.42098 * 109.35189 * 248.72688 * 19 18 17 22 22 C 1.55047 * 110.02703 * 267.19222 * 15 14 12 23 23 C 1.50697 * 109.46988 * 274.72571 * 9 7 2 24 24 C 1.38236 * 119.99923 * 115.53591 * 23 9 7 25 25 C 1.38234 * 119.99929 * 179.97438 * 24 23 9 26 26 C 1.38236 * 119.99961 * 359.97438 * 25 24 23 27 27 C 1.38235 * 120.00111 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99928 * 0.02562 * 27 26 25 29 29 H 0.97004 * 119.99336 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46944 * 54.99966 * 11 9 7 31 31 H 1.08998 * 109.47134 * 175.00146 * 11 9 7 32 32 H 1.09004 * 109.64891 * 286.32630 * 17 15 14 33 33 H 1.08998 * 109.64355 * 46.62295 * 17 15 14 34 34 H 1.09004 * 110.31868 * 91.00142 * 18 17 15 35 35 H 1.09003 * 110.31783 * 213.19260 * 18 17 15 36 36 H 1.08997 * 110.78859 * 316.54041 * 22 15 14 37 37 H 1.08998 * 110.79019 * 80.00860 * 22 15 14 38 38 H 1.08004 * 120.00111 * 359.97224 * 24 23 9 39 39 H 1.08000 * 119.99631 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.99486 * 179.70283 * 26 25 24 41 41 H 1.07995 * 119.99608 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.00088 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6100 1.9810 -1.3940 5 1 1.3947 2.6827 0.5837 6 1 3.4856 1.4754 0.8102 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0801 9 6 3.5075 -1.1966 0.1099 10 1 3.8256 -0.3783 0.7560 11 6 3.9729 -2.5269 0.7052 12 6 3.4690 -2.6478 2.1203 13 8 2.8052 -1.7610 2.6030 14 8 3.7575 -3.7404 2.8445 15 6 3.2396 -3.7886 4.2001 16 1 2.3175 -3.2112 4.2679 17 6 2.9790 -5.2478 4.6132 18 6 2.7626 -5.2985 6.1388 19 16 3.7117 -3.8823 6.8017 20 8 2.8163 -2.9509 7.3931 21 8 4.8240 -4.3661 7.5419 22 6 4.2922 -3.2282 5.1909 23 6 4.1120 -1.0199 -1.2592 24 6 4.8539 0.1106 -1.5465 25 6 5.4088 0.2723 -2.8022 26 6 5.2224 -0.6966 -3.7703 27 6 4.4814 -1.8276 -3.4826 28 6 3.9264 -1.9894 -2.2270 29 1 -0.4849 0.8401 0.0004 30 1 3.5797 -3.3496 0.1080 31 1 5.0623 -2.5646 0.7030 32 1 2.0897 -5.6196 4.1043 33 1 3.8372 -5.8636 4.3442 34 1 1.7041 -5.1885 6.3748 35 1 3.1464 -6.2345 6.5446 36 1 5.2863 -3.6078 4.9548 37 1 4.2827 -2.1383 5.1900 38 1 4.9999 0.8674 -0.7900 39 1 5.9881 1.1558 -3.0268 40 1 5.6520 -0.5679 -4.7528 41 1 4.3355 -2.5843 -4.2392 42 1 3.3472 -2.8727 -2.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796665026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:35 Heat of formation + Delta-G solvation = -152.695763 kcal Electronic energy + Delta-G solvation = -27048.336979 eV Core-core repulsion = 23084.858744 eV Total energy + Delta-G solvation = -3963.478234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57947 -40.09956 -38.28552 -38.16685 -37.17833 -35.98995 -35.74301 -33.80628 -31.66377 -30.99517 -30.42749 -28.20781 -26.29240 -24.54579 -23.42187 -22.74773 -21.92896 -20.89821 -19.93366 -19.11526 -18.89659 -18.11129 -17.62611 -17.39767 -17.12141 -16.81307 -16.52677 -16.27605 -15.82018 -15.51186 -15.41553 -15.01360 -14.82694 -14.45814 -14.24048 -14.05392 -13.99038 -13.63406 -13.55393 -13.34389 -13.31596 -13.21787 -13.03780 -12.93285 -12.68578 -12.24005 -12.16342 -11.98456 -11.93047 -11.87021 -11.79187 -11.53960 -11.27606 -11.26017 -11.11537 -10.69567 -9.64243 -9.34267 -8.27479 -6.25297 -1.05891 0.64604 0.69389 1.29280 1.31141 1.35294 1.36274 1.41551 1.76344 2.34139 2.51946 2.96088 3.03463 3.16921 3.26358 3.45754 3.54246 3.79075 3.95354 4.02653 4.08340 4.23849 4.28408 4.35217 4.36299 4.46634 4.54793 4.59606 4.74147 4.76159 4.82237 4.85312 4.94055 5.01108 5.16725 5.32551 5.35815 5.47588 5.62320 5.74538 5.78628 5.96880 6.27163 6.31797 6.74301 6.95569 7.37664 8.88876 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.003110 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.754300 B = 9000.763227 C = 9746.184225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.025 3.975 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.302 1.302 6 H -0.249 1.249 7 C -0.471 4.471 8 H 0.042 0.958 9 C 0.045 3.955 10 H 0.037 0.963 11 C -0.085 4.085 12 C 0.458 3.542 13 O -0.514 6.514 14 O -0.337 6.337 15 C 0.072 3.928 16 H 0.087 0.913 17 C -0.110 4.110 18 C -0.557 4.557 19 S 2.411 3.589 20 O -0.977 6.977 21 O -0.961 6.961 22 C -0.615 4.615 23 C -0.063 4.063 24 C -0.161 4.161 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.260 0.740 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.170 0.830 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -12.739 3.461 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.173 4.173 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.229 1.229 6 H -0.174 1.174 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.026 3.974 10 H 0.055 0.945 11 C -0.122 4.122 12 C 0.301 3.699 13 O -0.400 6.400 14 O -0.254 6.254 15 C 0.015 3.985 16 H 0.105 0.895 17 C -0.148 4.148 18 C -0.690 4.690 19 S 2.596 3.404 20 O -0.975 6.975 21 O -0.958 6.958 22 C -0.743 4.743 23 C -0.063 4.063 24 C -0.179 4.179 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.139 4.139 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.177 0.823 35 H 0.200 0.800 36 H 0.188 0.812 37 H 0.147 0.853 38 H 0.121 0.879 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.252 -12.020 4.591 17.767 hybrid contribution -0.689 1.362 -0.468 1.596 sum 11.562 -10.658 4.123 16.257 Atomic orbital electron populations 1.70020 1.07866 1.27314 1.53606 1.25584 0.95083 1.02078 0.94519 0.86281 0.79512 0.80564 0.79409 1.18502 1.22901 1.17366 1.20856 0.89755 0.92812 1.47464 0.94012 1.18203 0.94369 0.94409 0.90410 0.94467 1.21412 1.02735 1.00746 0.87335 1.24263 0.76923 0.79272 0.89432 1.90724 1.36083 1.41192 1.72034 1.86555 1.70630 1.42660 1.25569 1.23490 0.95918 0.99339 0.79788 0.89530 1.21972 1.07797 0.92606 0.92395 1.30309 1.15932 1.18777 1.03944 1.08268 0.76232 0.78681 0.77192 1.93594 1.65517 1.62977 1.75376 1.93580 1.52606 1.80755 1.68904 1.31185 1.10633 1.12440 1.20064 1.20386 0.93873 0.94506 0.97576 1.21191 1.00387 0.98069 0.98242 1.21328 1.00063 0.99972 0.92943 1.21359 1.00256 0.94235 0.99921 1.21441 0.97383 0.98643 0.96394 1.21077 0.99547 0.99546 0.93578 0.93116 0.86776 0.86140 0.86815 0.85729 0.82347 0.80043 0.81239 0.85309 0.87881 0.84503 0.83550 0.83815 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 2 C 0.02 1.44 5.47 84.65 0.46 1.90 16 3 Si 0.92 46.16 24.76 68.60 1.70 47.85 16 4 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 6 H -0.25 -11.82 5.95 99.48 0.59 -11.23 16 7 C -0.47 -25.54 7.19 25.60 0.18 -25.35 16 8 H 0.04 2.47 8.05 -2.91 -0.02 2.44 16 9 C 0.05 1.96 1.24 -12.29 -0.02 1.94 16 10 H 0.04 1.75 5.27 -2.39 -0.01 1.74 16 11 C -0.08 -2.90 4.95 29.85 0.15 -2.75 16 12 C 0.46 16.91 7.70 71.24 0.55 17.46 16 13 O -0.51 -23.97 14.20 21.96 0.31 -23.65 16 14 O -0.34 -9.45 9.95 -51.35 -0.51 -9.96 16 15 C 0.07 1.66 2.91 31.59 0.09 1.75 16 16 H 0.09 2.44 7.15 -2.39 -0.02 2.43 16 17 C -0.11 -1.39 6.09 31.29 0.19 -1.20 16 18 C -0.56 -5.24 7.26 72.38 0.53 -4.72 16 19 S 2.41 44.12 6.11 -56.49 -0.34 43.77 16 20 O -0.98 -27.39 18.14 -127.49 -2.31 -29.71 16 21 O -0.96 -22.29 18.14 -127.49 -2.31 -24.60 16 22 C -0.62 -12.21 7.01 72.68 0.51 -11.71 16 23 C -0.06 -2.44 4.30 -19.87 -0.09 -2.53 16 24 C -0.16 -5.88 8.15 22.27 0.18 -5.70 16 25 C -0.13 -3.76 10.05 22.27 0.22 -3.53 16 26 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16 27 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 28 C -0.12 -4.10 8.94 22.27 0.20 -3.90 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.11 3.53 7.34 -2.39 -0.02 3.52 16 31 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.16 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.17 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.10 3.81 6.76 -2.91 -0.02 3.79 16 39 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.12 4.00 7.38 -2.91 -0.02 3.98 16 Total: -1.00 -85.59 358.20 1.36 -84.23 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.92 Total: 16.89 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 3.61 Total: -45.02 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.30 Total: -59.80 kcal Atomic # 8 Polarization: -83.10 SS G_CDS: -4.83 Total: -87.92 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.70 Total: 47.85 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.34 Total: 43.77 kcal Total: -85.59 1.36 -84.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796665026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.466 kcal (2) G-P(sol) polarization free energy of solvation -85.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds