Wall clock time and date at job start Tue Mar 31 2020 20:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99597 * 2 1 4 4 H 1.48503 * 109.47120 * 239.99389 * 3 2 1 5 5 H 1.48494 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46744 * 119.99890 * 3 2 1 7 7 C 1.37872 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00497 * 185.85198 * 7 2 1 9 9 C 1.50701 * 119.99794 * 5.84255 * 7 2 1 10 10 H 1.08994 * 109.47537 * 331.94636 * 9 7 2 11 11 C 1.52999 * 109.47054 * 211.94347 * 9 7 2 12 12 C 1.50695 * 109.47323 * 65.00670 * 11 9 7 13 13 O 1.20826 * 119.99656 * 359.97438 * 12 11 9 14 14 O 1.34226 * 120.00297 * 180.02562 * 12 11 9 15 15 C 1.45204 * 117.00003 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.64222 * 330.41711 * 15 14 12 17 17 C 1.53878 * 109.64807 * 90.72040 * 15 14 12 18 18 C 1.55052 * 106.61965 * 167.03350 * 17 15 14 19 19 S 1.83283 * 102.56666 * 317.56354 * 18 17 15 20 20 O 1.42102 * 109.35624 * 269.81319 * 19 18 17 21 21 O 1.42104 * 109.35160 * 136.61500 * 19 18 17 22 22 C 1.54171 * 109.64403 * 209.99787 * 15 14 12 23 23 C 1.50703 * 109.46957 * 91.94601 * 9 7 2 24 24 C 1.38237 * 119.99836 * 238.32973 * 23 9 7 25 25 C 1.38234 * 119.99524 * 180.27515 * 24 23 9 26 26 C 1.38238 * 120.00522 * 359.49214 * 25 24 23 27 27 C 1.38232 * 119.99409 * 0.50794 * 26 25 24 28 28 C 1.38236 * 119.99882 * 58.35086 * 23 9 7 29 29 H 0.97002 * 120.00325 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46947 * 185.00162 * 11 9 7 31 31 H 1.08994 * 109.47533 * 304.99832 * 11 9 7 32 32 H 1.08995 * 110.02600 * 286.31934 * 17 15 14 33 33 H 1.08996 * 110.02409 * 47.74037 * 17 15 14 34 34 H 1.09003 * 110.78753 * 199.29717 * 18 17 15 35 35 H 1.08994 * 110.79036 * 75.83562 * 18 17 15 36 36 H 1.09000 * 110.31590 * 331.13778 * 22 15 14 37 37 H 1.08993 * 110.32144 * 93.22941 * 22 15 14 38 38 H 1.07994 * 120.00133 * 0.02562 * 24 23 9 39 39 H 1.08003 * 119.99917 * 179.72571 * 25 24 23 40 40 H 1.07997 * 120.00319 * 180.23976 * 26 25 24 41 41 H 1.08004 * 120.00000 * 179.72388 * 27 26 25 42 42 H 1.08000 * 119.99904 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0803 -1.1964 0.0959 9 6 1.2570 -2.4958 -0.1317 10 1 0.2508 -2.3795 0.2708 11 6 1.9941 -3.5884 0.6453 12 6 1.9693 -3.2623 2.1164 13 8 1.4190 -2.2587 2.5035 14 8 2.5595 -4.0862 2.9965 15 6 2.4968 -3.7087 4.3972 16 1 2.4546 -2.6229 4.4825 17 6 1.2437 -4.3250 5.0436 18 6 1.4126 -4.1676 6.5768 19 16 3.1736 -4.6074 6.8313 20 8 3.2804 -6.0040 7.0708 21 8 3.7633 -3.6847 7.7370 22 6 3.7439 -4.2382 5.1329 23 6 1.1747 -2.8822 -1.5861 24 6 -0.0582 -3.0662 -2.1836 25 6 -0.1336 -3.4262 -3.5161 26 6 1.0237 -3.5920 -4.2539 27 6 2.2565 -3.4080 -3.6563 28 6 2.3321 -3.0531 -2.3224 29 1 -0.4851 0.8400 -0.0004 30 1 1.5037 -4.5473 0.4775 31 1 3.0273 -3.6438 0.3027 32 1 0.3522 -3.7942 4.7098 33 1 1.1699 -5.3806 4.7825 34 1 0.7602 -4.8585 7.1108 35 1 1.2225 -3.1391 6.8834 36 1 4.1109 -5.1447 4.6515 37 1 4.5242 -3.4775 5.1510 38 1 -0.9624 -2.9326 -1.6084 39 1 -1.0967 -3.5743 -3.9818 40 1 0.9647 -3.8695 -5.2959 41 1 3.1608 -3.5419 -4.2315 42 1 3.2953 -2.9093 -1.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796665027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:40 Heat of formation + Delta-G solvation = -132.330144 kcal Electronic energy + Delta-G solvation = -26919.353522 eV Core-core repulsion = 22956.758408 eV Total energy + Delta-G solvation = -3962.595115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14464 -38.49540 -37.32006 -36.91784 -36.26980 -34.66151 -34.13859 -31.62240 -30.15131 -30.09594 -29.04492 -26.07327 -25.12339 -23.21984 -21.96348 -21.62547 -20.57628 -19.43591 -19.11578 -17.51021 -17.18703 -16.70004 -16.42223 -16.06825 -15.86696 -15.57431 -15.38142 -14.59075 -14.34962 -14.30178 -14.02806 -13.96214 -13.47695 -12.97515 -12.72748 -12.60256 -12.49378 -12.41277 -12.33320 -12.24569 -12.13247 -11.83060 -11.74772 -11.35082 -11.13945 -10.96367 -10.86901 -10.71643 -10.65452 -10.36524 -10.34854 -10.18930 -9.71506 -9.51166 -9.20234 -8.47952 -8.13801 -7.74618 -6.06823 -4.07978 -0.27378 2.14012 2.19388 2.24229 2.94835 3.03581 3.28360 3.29947 3.34176 3.36553 3.77207 4.04299 4.31125 4.34823 4.39859 4.56654 4.64389 4.71470 5.12312 5.26851 5.27748 5.39432 5.43049 5.58976 5.63449 5.68128 5.74838 5.76328 5.94681 6.00213 6.16888 6.31312 6.39838 6.57414 6.79244 6.86765 6.97987 7.22436 7.31282 7.40164 7.73265 7.82681 7.91421 8.21104 8.49143 8.92021 9.54530 11.02695 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.003087 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.254844 B = 9068.185081 C =10249.288383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.080 3.920 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.052 0.948 9 C 0.074 3.926 10 H 0.077 0.923 11 C -0.094 4.094 12 C 0.453 3.547 13 O -0.458 6.458 14 O -0.357 6.357 15 C 0.096 3.904 16 H 0.106 0.894 17 C -0.140 4.140 18 C -0.582 4.582 19 S 2.398 3.602 20 O -0.933 6.933 21 O -0.935 6.935 22 C -0.596 4.596 23 C -0.026 4.026 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.153 4.153 27 C -0.131 4.131 28 C -0.115 4.115 29 H 0.261 0.739 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -10.329 5.947 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.055 3.945 10 H 0.095 0.905 11 C -0.132 4.132 12 C 0.294 3.706 13 O -0.339 6.339 14 O -0.276 6.276 15 C 0.039 3.961 16 H 0.124 0.876 17 C -0.179 4.179 18 C -0.712 4.712 19 S 2.580 3.420 20 O -0.930 6.930 21 O -0.933 6.933 22 C -0.724 4.724 23 C -0.026 4.026 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.171 4.171 27 C -0.149 4.149 28 C -0.133 4.133 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.652 -10.186 6.904 12.588 hybrid contribution 0.055 1.542 -0.834 1.754 sum 2.707 -8.644 6.070 10.904 Atomic orbital electron populations 1.69873 1.05930 1.26749 1.48844 1.24810 0.94683 0.98926 0.93969 0.86765 0.79821 0.83530 0.78527 1.20235 1.21272 1.20323 1.20668 0.92605 0.89665 1.51117 0.92972 1.17933 0.99349 0.91261 0.85916 0.90456 1.21637 1.03867 1.01574 0.86109 1.24160 0.75619 0.81241 0.89599 1.90743 1.39137 1.24759 1.79262 1.86681 1.72761 1.52281 1.15871 1.22742 0.90658 1.01875 0.80862 0.87564 1.22628 1.00386 1.04426 0.90460 1.30551 1.23789 1.12975 1.03881 1.08834 0.79685 0.75677 0.77821 1.93632 1.85496 1.29903 1.83950 1.93629 1.75132 1.64798 1.59691 1.30782 1.06923 1.12912 1.21832 1.20632 0.91829 0.91230 0.98931 1.21092 0.97968 0.99993 0.94617 1.21000 0.97452 1.01329 0.94817 1.20829 0.93016 1.04340 0.98906 1.20994 0.96859 1.01621 0.95418 1.20964 0.98670 1.00030 0.93614 0.92880 0.90227 0.89212 0.87359 0.88395 0.83938 0.83980 0.83035 0.83671 0.86683 0.87510 0.87674 0.87519 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.46 12.81 55.43 0.71 -23.75 16 2 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -12.71 6.45 -34.44 -0.22 -12.93 16 8 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 9 C 0.07 1.65 1.73 -92.92 -0.16 1.49 16 10 H 0.08 1.96 6.87 -51.93 -0.36 1.60 16 11 C -0.09 -1.70 5.04 -27.89 -0.14 -1.84 16 12 C 0.45 8.39 7.69 36.00 0.28 8.67 16 13 O -0.46 -10.13 14.20 -18.75 -0.27 -10.40 16 14 O -0.36 -5.34 9.88 -39.25 -0.39 -5.72 16 15 C 0.10 1.15 2.88 -25.66 -0.07 1.07 16 16 H 0.11 1.38 7.15 -51.93 -0.37 1.01 16 17 C -0.14 -1.36 6.14 -25.19 -0.15 -1.52 16 18 C -0.58 -4.26 7.31 38.24 0.28 -3.98 16 19 S 2.40 21.55 6.10 -107.50 -0.66 20.90 16 20 O -0.93 -11.12 18.15 -57.71 -1.05 -12.17 16 21 O -0.94 -11.53 18.15 -57.71 -1.05 -12.58 16 22 C -0.60 -5.36 6.97 37.77 0.26 -5.10 16 23 C -0.03 -0.53 4.77 -104.62 -0.50 -1.03 16 24 C -0.12 -2.35 9.67 -39.58 -0.38 -2.74 16 25 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 26 C -0.15 -2.51 10.05 -39.58 -0.40 -2.91 16 27 C -0.13 -2.22 10.05 -39.58 -0.40 -2.61 16 28 C -0.11 -2.18 8.86 -39.58 -0.35 -2.53 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.51 7.66 -51.93 -0.40 1.11 16 32 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.15 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.15 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.12 2.30 7.95 -52.49 -0.42 1.88 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.11 2.07 7.70 -52.49 -0.40 1.66 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -34.61 367.83 -10.35 -44.95 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.72 Total: 3.65 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.46 Total: -26.54 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.71 Total: -23.75 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -2.75 Total: -40.87 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 21.55 SS G_CDS: -0.66 Total: 20.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.61 -10.35 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796665027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.378 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds