Wall clock time and date at job start Tue Mar 31 2020 20:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99597 * 2 1 4 4 H 1.48503 * 109.47120 * 239.99389 * 3 2 1 5 5 H 1.48494 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46744 * 119.99890 * 3 2 1 7 7 C 1.37872 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00497 * 185.85198 * 7 2 1 9 9 C 1.50701 * 119.99794 * 5.84255 * 7 2 1 10 10 H 1.08994 * 109.47537 * 331.94636 * 9 7 2 11 11 C 1.52999 * 109.47054 * 211.94347 * 9 7 2 12 12 C 1.50695 * 109.47323 * 65.00670 * 11 9 7 13 13 O 1.20826 * 119.99656 * 359.97438 * 12 11 9 14 14 O 1.34226 * 120.00297 * 180.02562 * 12 11 9 15 15 C 1.45204 * 117.00003 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.64222 * 330.41711 * 15 14 12 17 17 C 1.53878 * 109.64807 * 90.72040 * 15 14 12 18 18 C 1.55052 * 106.61965 * 167.03350 * 17 15 14 19 19 S 1.83283 * 102.56666 * 317.56354 * 18 17 15 20 20 O 1.42102 * 109.35624 * 269.81319 * 19 18 17 21 21 O 1.42104 * 109.35160 * 136.61500 * 19 18 17 22 22 C 1.54171 * 109.64403 * 209.99787 * 15 14 12 23 23 C 1.50703 * 109.46957 * 91.94601 * 9 7 2 24 24 C 1.38237 * 119.99836 * 238.32973 * 23 9 7 25 25 C 1.38234 * 119.99524 * 180.27515 * 24 23 9 26 26 C 1.38238 * 120.00522 * 359.49214 * 25 24 23 27 27 C 1.38232 * 119.99409 * 0.50794 * 26 25 24 28 28 C 1.38236 * 119.99882 * 58.35086 * 23 9 7 29 29 H 0.97002 * 120.00325 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46947 * 185.00162 * 11 9 7 31 31 H 1.08994 * 109.47533 * 304.99832 * 11 9 7 32 32 H 1.08995 * 110.02600 * 286.31934 * 17 15 14 33 33 H 1.08996 * 110.02409 * 47.74037 * 17 15 14 34 34 H 1.09003 * 110.78753 * 199.29717 * 18 17 15 35 35 H 1.08994 * 110.79036 * 75.83562 * 18 17 15 36 36 H 1.09000 * 110.31590 * 331.13778 * 22 15 14 37 37 H 1.08993 * 110.32144 * 93.22941 * 22 15 14 38 38 H 1.07994 * 120.00133 * 0.02562 * 24 23 9 39 39 H 1.08003 * 119.99917 * 179.72571 * 25 24 23 40 40 H 1.07997 * 120.00319 * 180.23976 * 26 25 24 41 41 H 1.08004 * 120.00000 * 179.72388 * 27 26 25 42 42 H 1.08000 * 119.99904 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0803 -1.1964 0.0959 9 6 1.2570 -2.4958 -0.1317 10 1 0.2508 -2.3795 0.2708 11 6 1.9941 -3.5884 0.6453 12 6 1.9693 -3.2623 2.1164 13 8 1.4190 -2.2587 2.5035 14 8 2.5595 -4.0862 2.9965 15 6 2.4968 -3.7087 4.3972 16 1 2.4546 -2.6229 4.4825 17 6 1.2437 -4.3250 5.0436 18 6 1.4126 -4.1676 6.5768 19 16 3.1736 -4.6074 6.8313 20 8 3.2804 -6.0040 7.0708 21 8 3.7633 -3.6847 7.7370 22 6 3.7439 -4.2382 5.1329 23 6 1.1747 -2.8822 -1.5861 24 6 -0.0582 -3.0662 -2.1836 25 6 -0.1336 -3.4262 -3.5161 26 6 1.0237 -3.5920 -4.2539 27 6 2.2565 -3.4080 -3.6563 28 6 2.3321 -3.0531 -2.3224 29 1 -0.4851 0.8400 -0.0004 30 1 1.5037 -4.5473 0.4775 31 1 3.0273 -3.6438 0.3027 32 1 0.3522 -3.7942 4.7098 33 1 1.1699 -5.3806 4.7825 34 1 0.7602 -4.8585 7.1108 35 1 1.2225 -3.1391 6.8834 36 1 4.1109 -5.1447 4.6515 37 1 4.5242 -3.4775 5.1510 38 1 -0.9624 -2.9326 -1.6084 39 1 -1.0967 -3.5743 -3.9818 40 1 0.9647 -3.8695 -5.2959 41 1 3.1608 -3.5419 -4.2315 42 1 3.2953 -2.9093 -1.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796665027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:40 Heat of formation + Delta-G solvation = -154.244405 kcal Electronic energy + Delta-G solvation = -26920.303796 eV Core-core repulsion = 22956.758408 eV Total energy + Delta-G solvation = -3963.545389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50641 -39.91907 -38.24291 -38.10647 -37.15990 -35.87328 -35.66352 -33.46672 -31.50695 -31.00773 -30.39171 -27.77313 -26.09690 -24.76776 -23.24859 -22.85854 -21.80423 -20.97499 -19.90320 -18.83298 -18.52130 -18.06013 -17.50212 -17.17390 -17.03441 -16.80417 -16.58515 -16.36668 -15.68125 -15.46960 -15.11710 -15.04243 -14.75688 -14.28357 -14.05327 -13.90446 -13.77182 -13.52426 -13.41740 -13.28647 -13.21313 -13.16671 -13.01421 -12.82724 -12.61409 -12.52889 -12.26145 -12.05749 -11.85257 -11.74662 -11.57887 -11.44301 -11.30840 -11.14047 -10.94882 -10.47593 -9.54478 -9.22693 -8.06645 -6.10366 -1.03632 0.77649 0.81655 1.33375 1.38819 1.39030 1.44406 1.50644 1.90129 2.44313 2.50824 3.01131 3.16461 3.23092 3.33558 3.42976 3.53806 3.85369 3.93961 4.12849 4.23999 4.35601 4.38551 4.44638 4.52916 4.53896 4.56787 4.69333 4.72533 4.78414 4.90330 4.93224 4.96874 5.14506 5.37005 5.47466 5.56861 5.62837 5.76052 5.84097 5.93836 6.14218 6.37233 6.45272 6.97206 7.06786 7.52990 9.02108 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.003087 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.254844 B = 9068.185081 C =10249.288383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.029 3.971 3 Si 0.931 3.069 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.496 4.496 8 H 0.049 0.951 9 C 0.077 3.923 10 H 0.036 0.964 11 C -0.093 4.093 12 C 0.459 3.541 13 O -0.503 6.503 14 O -0.348 6.348 15 C 0.080 3.920 16 H 0.092 0.908 17 C -0.143 4.143 18 C -0.564 4.564 19 S 2.424 3.576 20 O -0.959 6.959 21 O -0.969 6.969 22 C -0.590 4.590 23 C -0.048 4.048 24 C -0.142 4.142 25 C -0.129 4.129 26 C -0.146 4.146 27 C -0.127 4.127 28 C -0.127 4.127 29 H 0.255 0.745 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.171 0.829 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -11.871 4.812 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.058 3.942 10 H 0.054 0.946 11 C -0.130 4.130 12 C 0.301 3.699 13 O -0.388 6.388 14 O -0.267 6.267 15 C 0.024 3.976 16 H 0.110 0.890 17 C -0.182 4.182 18 C -0.695 4.695 19 S 2.609 3.391 20 O -0.956 6.956 21 O -0.966 6.966 22 C -0.718 4.718 23 C -0.049 4.049 24 C -0.160 4.160 25 C -0.147 4.147 26 C -0.164 4.164 27 C -0.145 4.145 28 C -0.145 4.145 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.189 0.811 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.174 0.826 38 H 0.116 0.884 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.791 -11.762 5.779 13.642 hybrid contribution -0.279 1.913 -0.512 2.000 sum 3.512 -9.849 5.267 11.708 Atomic orbital electron populations 1.70012 1.07028 1.26619 1.51410 1.25439 0.95272 1.01580 0.94772 0.86037 0.78774 0.80837 0.78530 1.19452 1.21563 1.20395 1.20973 0.92493 0.90981 1.48941 0.93266 1.17718 0.97128 0.91576 0.87750 0.94580 1.21545 1.04498 1.01268 0.85700 1.24176 0.74769 0.80688 0.90220 1.90733 1.41222 1.26777 1.80104 1.86626 1.71726 1.51058 1.17242 1.23118 0.93367 1.01704 0.79451 0.89016 1.22646 0.98620 1.05077 0.91825 1.30491 1.22117 1.14616 1.02272 1.07988 0.79942 0.74278 0.76919 1.93594 1.86256 1.31402 1.84375 1.93586 1.76509 1.65464 1.61036 1.30770 1.05987 1.13815 1.21218 1.20480 0.93051 0.93387 0.97988 1.21123 0.97182 1.01654 0.96059 1.21298 0.99401 1.00268 0.93709 1.21282 0.92200 1.02452 1.00494 1.21382 0.98577 0.99935 0.94614 1.21077 0.98019 1.00634 0.94767 0.93572 0.87641 0.87505 0.88545 0.86672 0.81136 0.82745 0.81599 0.82587 0.88433 0.85020 0.83972 0.84211 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.08 12.81 21.44 0.27 -52.81 16 2 C 0.03 1.60 5.45 84.65 0.46 2.06 16 3 Si 0.93 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 7 C -0.50 -25.62 6.45 25.60 0.17 -25.45 16 8 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 9 C 0.08 3.53 1.73 -12.28 -0.02 3.51 16 10 H 0.04 1.94 6.87 -2.39 -0.02 1.92 16 11 C -0.09 -3.35 5.04 29.85 0.15 -3.20 16 12 C 0.46 17.21 7.69 71.23 0.55 17.76 16 13 O -0.50 -23.17 14.20 21.96 0.31 -22.86 16 14 O -0.35 -10.20 9.88 -51.38 -0.51 -10.71 16 15 C 0.08 1.88 2.88 31.29 0.09 1.97 16 16 H 0.09 2.44 7.15 -2.39 -0.02 2.42 16 17 C -0.14 -2.61 6.14 31.59 0.19 -2.42 16 18 C -0.56 -7.14 7.31 72.68 0.53 -6.61 16 19 S 2.42 40.34 6.10 -56.49 -0.34 40.00 16 20 O -0.96 -21.47 18.15 -127.49 -2.31 -23.78 16 21 O -0.97 -23.11 18.15 -127.49 -2.31 -25.42 16 22 C -0.59 -9.82 6.97 72.38 0.50 -9.32 16 23 C -0.05 -2.02 4.77 -19.86 -0.09 -2.12 16 24 C -0.14 -5.70 9.67 22.27 0.22 -5.48 16 25 C -0.13 -4.24 10.05 22.27 0.22 -4.01 16 26 C -0.15 -4.28 10.05 22.27 0.22 -4.06 16 27 C -0.13 -3.89 10.05 22.27 0.22 -3.66 16 28 C -0.13 -4.63 8.86 22.27 0.20 -4.43 16 29 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.11 3.48 7.66 -2.39 -0.02 3.47 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.17 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.17 2.31 8.10 -2.39 -0.02 2.30 16 37 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 4.13 7.95 -2.91 -0.02 4.11 16 39 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 41 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.12 4.10 7.70 -2.91 -0.02 4.08 16 Total: -1.00 -77.08 367.83 1.77 -75.31 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.02 Total: 19.57 kcal Atomic # 6 Polarization: -49.09 SS G_CDS: 3.61 Total: -45.47 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.27 Total: -52.81 kcal Atomic # 8 Polarization: -77.96 SS G_CDS: -4.82 Total: -82.78 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 40.34 SS G_CDS: -0.34 Total: 40.00 kcal Total: -77.08 1.77 -75.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796665027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.935 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds