Wall clock time and date at job start Tue Mar 31 2020 20:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48510 * 109.47275 * 240.00463 * 3 2 1 5 5 H 1.48504 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47212 * 120.00503 * 3 2 1 7 7 C 1.37872 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00460 * 186.11560 * 7 2 1 9 9 C 1.50699 * 119.99574 * 6.10688 * 7 2 1 10 10 H 1.09001 * 109.47121 * 25.84435 * 9 7 2 11 11 C 1.53000 * 109.47045 * 145.84006 * 9 7 2 12 12 C 1.50698 * 109.47406 * 295.00335 * 11 9 7 13 13 O 1.20826 * 119.99936 * 359.97438 * 12 11 9 14 14 O 1.34224 * 120.00358 * 179.72171 * 12 11 9 15 15 C 1.45202 * 117.00430 * 180.27393 * 14 12 11 16 16 H 1.09004 * 110.00947 * 28.61824 * 15 14 12 17 17 C 1.53881 * 110.02836 * 267.19606 * 15 14 12 18 18 C 1.54168 * 108.70280 * 193.52572 * 17 15 14 19 19 S 1.82920 * 105.08625 * 27.90660 * 18 17 15 20 20 O 1.42098 * 109.35389 * 244.48056 * 19 18 17 21 21 O 1.42101 * 109.35146 * 111.27338 * 19 18 17 22 22 C 1.55044 * 110.03123 * 149.99808 * 15 14 12 23 23 C 1.50704 * 109.47421 * 265.83920 * 9 7 2 24 24 C 1.38232 * 119.99888 * 303.46801 * 23 9 7 25 25 C 1.38240 * 119.99347 * 179.78569 * 24 23 9 26 26 C 1.38233 * 120.00322 * 0.46516 * 25 24 23 27 27 C 1.38232 * 119.99742 * 359.76854 * 26 25 24 28 28 C 1.38229 * 120.00577 * 0.02562 * 27 26 25 29 29 H 0.97004 * 120.00129 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47890 * 174.99941 * 11 9 7 31 31 H 1.09005 * 109.46885 * 54.99973 * 11 9 7 32 32 H 1.09003 * 109.64453 * 313.37600 * 17 15 14 33 33 H 1.08996 * 109.64709 * 73.66806 * 17 15 14 34 34 H 1.08995 * 110.31494 * 269.00402 * 18 17 15 35 35 H 1.08996 * 110.40118 * 146.85411 * 18 17 15 36 36 H 1.08997 * 110.79313 * 279.99783 * 22 15 14 37 37 H 1.09010 * 110.78340 * 43.26835 * 22 15 14 38 38 H 1.07997 * 120.00439 * 359.97438 * 24 23 9 39 39 H 1.08004 * 119.99339 * 180.25385 * 25 24 23 40 40 H 1.08000 * 119.99890 * 179.78689 * 26 25 24 41 41 H 1.08007 * 120.00063 * 180.02562 * 27 26 25 42 42 H 1.08000 * 120.00734 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.0991 9 6 1.2575 -2.4953 -0.1400 10 1 0.3199 -2.3212 -0.6680 11 6 2.1101 -3.4908 -0.9293 12 6 2.2979 -2.9860 -2.3368 13 8 1.8004 -1.9379 -2.6741 14 8 3.0220 -3.6983 -3.2142 15 6 3.1660 -3.1484 -4.5503 16 1 3.1092 -2.0605 -4.5140 17 6 2.0648 -3.7042 -5.4704 18 6 2.4344 -3.3844 -6.9326 19 16 4.2614 -3.2984 -6.9540 20 8 4.6668 -1.9760 -7.2796 21 8 4.7761 -4.4001 -7.6893 22 6 4.5203 -3.5893 -5.1630 23 6 0.9669 -3.0568 1.2280 24 6 2.0025 -3.2922 2.1128 25 6 1.7354 -3.8032 3.3692 26 6 0.4337 -4.0877 3.7373 27 6 -0.6014 -3.8568 2.8507 28 6 -0.3349 -3.3419 1.5959 29 1 -0.4850 0.8401 0.0004 30 1 1.6093 -4.4586 -0.9542 31 1 3.0827 -3.5972 -0.4487 32 1 1.9880 -4.7836 -5.3395 33 1 1.1110 -3.2383 -5.2231 34 1 2.0068 -2.4270 -7.2303 35 1 2.0849 -4.1766 -7.5947 36 1 5.3353 -2.9723 -4.7846 37 1 4.7104 -4.6439 -4.9628 38 1 3.0200 -3.0741 1.8236 39 1 2.5442 -3.9833 4.0620 40 1 0.2255 -4.4902 4.7176 41 1 -1.6185 -4.0788 3.1384 42 1 -1.1435 -3.1619 0.9030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796665028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:45 Heat of formation + Delta-G solvation = -132.017332 kcal Electronic energy + Delta-G solvation = -26939.824861 eV Core-core repulsion = 22977.243310 eV Total energy + Delta-G solvation = -3962.581550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.15042 -38.47312 -37.32613 -36.93422 -36.27806 -34.71151 -34.13852 -31.61738 -30.14937 -30.07509 -29.03849 -26.07317 -25.14411 -23.22614 -21.94667 -21.61596 -20.59559 -19.44934 -19.09980 -17.54965 -17.19626 -16.70288 -16.37261 -16.09224 -15.84234 -15.56890 -15.32282 -14.61476 -14.55682 -14.30800 -14.04260 -13.92962 -13.48583 -12.91439 -12.76068 -12.57483 -12.52406 -12.41225 -12.32399 -12.18516 -12.09713 -11.85193 -11.72806 -11.27122 -11.17586 -10.95064 -10.85231 -10.81988 -10.67991 -10.34263 -10.33246 -10.17871 -9.72698 -9.54202 -9.16824 -8.48676 -8.11204 -7.70929 -6.06657 -4.08378 -0.28968 2.12607 2.22008 2.26587 2.91646 3.01550 3.27895 3.31545 3.35741 3.39148 3.74851 4.05340 4.29479 4.35738 4.41354 4.52711 4.65631 4.67181 5.18607 5.20878 5.28463 5.39359 5.41552 5.60863 5.65428 5.66473 5.74073 5.76882 5.94382 5.99803 6.18325 6.33391 6.40740 6.58686 6.80775 6.86698 6.98745 7.24686 7.31315 7.41715 7.72144 7.84953 7.92680 8.21649 8.46298 8.91909 9.55355 11.02958 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003139 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.869943 B = 8919.094018 C =10114.842285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.081 3.919 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.053 0.947 9 C 0.076 3.924 10 H 0.074 0.926 11 C -0.094 4.094 12 C 0.454 3.546 13 O -0.460 6.460 14 O -0.352 6.352 15 C 0.089 3.911 16 H 0.109 0.891 17 C -0.134 4.134 18 C -0.586 4.586 19 S 2.397 3.603 20 O -0.931 6.931 21 O -0.935 6.935 22 C -0.591 4.591 23 C -0.023 4.023 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.117 4.117 29 H 0.262 0.738 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -10.598 -7.160 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.123 4.123 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.071 0.929 9 C 0.058 3.942 10 H 0.092 0.908 11 C -0.132 4.132 12 C 0.295 3.705 13 O -0.342 6.342 14 O -0.271 6.271 15 C 0.032 3.968 16 H 0.127 0.873 17 C -0.173 4.173 18 C -0.716 4.716 19 S 2.579 3.421 20 O -0.928 6.928 21 O -0.932 6.932 22 C -0.719 4.719 23 C -0.023 4.023 24 C -0.132 4.132 25 C -0.149 4.149 26 C -0.171 4.171 27 C -0.146 4.146 28 C -0.136 4.136 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.765 -9.956 -8.045 13.342 hybrid contribution -0.156 1.078 0.786 1.343 sum 3.609 -8.878 -7.259 12.022 Atomic orbital electron populations 1.69891 1.05974 1.26827 1.48819 1.24811 0.94682 0.98951 0.93866 0.86750 0.79836 0.83428 0.78535 1.20165 1.21286 1.20337 1.20683 0.92582 0.89535 1.51351 0.92912 1.17917 0.97445 0.91352 0.87521 0.90756 1.21670 1.03486 1.00658 0.87407 1.24204 0.75366 0.83076 0.87894 1.90731 1.44166 1.21549 1.77720 1.86677 1.68354 1.51711 1.20347 1.23020 0.90528 1.00807 0.82454 0.87292 1.22293 1.01318 1.04248 0.89419 1.30413 1.24847 1.12158 1.04179 1.08824 0.79512 0.75437 0.78321 1.93651 1.80425 1.36793 1.81909 1.93625 1.77399 1.53975 1.68200 1.30928 1.04622 1.12782 1.23589 1.20593 0.92094 0.90944 0.98707 1.20955 0.99398 0.99419 0.93474 1.20987 0.96128 1.01124 0.96667 1.20818 0.93330 1.03957 0.99026 1.20987 0.98047 1.00919 0.94644 1.21073 0.96980 0.99247 0.96250 0.92862 0.90189 0.89130 0.88599 0.87941 0.84049 0.83900 0.83736 0.83215 0.86801 0.87559 0.87715 0.87553 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.61 12.87 55.43 0.71 -23.89 16 2 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.79 6.37 -34.44 -0.22 -13.01 16 8 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 9 C 0.08 1.70 1.67 -92.92 -0.16 1.55 16 10 H 0.07 1.88 6.98 -51.93 -0.36 1.52 16 11 C -0.09 -1.70 5.06 -27.88 -0.14 -1.84 16 12 C 0.45 8.40 7.70 36.00 0.28 8.67 16 13 O -0.46 -10.21 14.20 -18.75 -0.27 -10.47 16 14 O -0.35 -5.24 9.95 -39.24 -0.39 -5.63 16 15 C 0.09 1.08 2.91 -25.19 -0.07 1.01 16 16 H 0.11 1.47 7.15 -51.93 -0.37 1.10 16 17 C -0.13 -1.27 6.09 -25.66 -0.16 -1.43 16 18 C -0.59 -4.24 7.26 37.77 0.27 -3.96 16 19 S 2.40 21.90 6.11 -107.50 -0.66 21.24 16 20 O -0.93 -12.03 18.14 -57.71 -1.05 -13.08 16 21 O -0.93 -11.02 18.15 -57.71 -1.05 -12.06 16 22 C -0.59 -5.30 7.01 38.24 0.27 -5.04 16 23 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 24 C -0.11 -2.19 8.86 -39.58 -0.35 -2.54 16 25 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 26 C -0.15 -2.54 10.05 -39.59 -0.40 -2.94 16 27 C -0.13 -2.24 10.05 -39.59 -0.40 -2.64 16 28 C -0.12 -2.34 9.67 -39.58 -0.38 -2.72 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.52 7.78 -51.93 -0.40 1.11 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.14 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.15 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.11 2.09 7.76 -52.49 -0.41 1.68 16 39 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -34.79 368.16 -10.35 -45.14 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.73 Total: 3.30 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -2.45 Total: -26.42 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.71 Total: -23.89 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -2.75 Total: -41.25 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 21.90 SS G_CDS: -0.66 Total: 21.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.79 -10.35 -45.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796665028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.876 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds