Wall clock time and date at job start Tue Mar 31 2020 20:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48510 * 109.47275 * 240.00463 * 3 2 1 5 5 H 1.48504 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47212 * 120.00503 * 3 2 1 7 7 C 1.37872 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00460 * 186.11560 * 7 2 1 9 9 C 1.50699 * 119.99574 * 6.10688 * 7 2 1 10 10 H 1.09001 * 109.47121 * 25.84435 * 9 7 2 11 11 C 1.53000 * 109.47045 * 145.84006 * 9 7 2 12 12 C 1.50698 * 109.47406 * 295.00335 * 11 9 7 13 13 O 1.20826 * 119.99936 * 359.97438 * 12 11 9 14 14 O 1.34224 * 120.00358 * 179.72171 * 12 11 9 15 15 C 1.45202 * 117.00430 * 180.27393 * 14 12 11 16 16 H 1.09004 * 110.00947 * 28.61824 * 15 14 12 17 17 C 1.53881 * 110.02836 * 267.19606 * 15 14 12 18 18 C 1.54168 * 108.70280 * 193.52572 * 17 15 14 19 19 S 1.82920 * 105.08625 * 27.90660 * 18 17 15 20 20 O 1.42098 * 109.35389 * 244.48056 * 19 18 17 21 21 O 1.42101 * 109.35146 * 111.27338 * 19 18 17 22 22 C 1.55044 * 110.03123 * 149.99808 * 15 14 12 23 23 C 1.50704 * 109.47421 * 265.83920 * 9 7 2 24 24 C 1.38232 * 119.99888 * 303.46801 * 23 9 7 25 25 C 1.38240 * 119.99347 * 179.78569 * 24 23 9 26 26 C 1.38233 * 120.00322 * 0.46516 * 25 24 23 27 27 C 1.38232 * 119.99742 * 359.76854 * 26 25 24 28 28 C 1.38229 * 120.00577 * 0.02562 * 27 26 25 29 29 H 0.97004 * 120.00129 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47890 * 174.99941 * 11 9 7 31 31 H 1.09005 * 109.46885 * 54.99973 * 11 9 7 32 32 H 1.09003 * 109.64453 * 313.37600 * 17 15 14 33 33 H 1.08996 * 109.64709 * 73.66806 * 17 15 14 34 34 H 1.08995 * 110.31494 * 269.00402 * 18 17 15 35 35 H 1.08996 * 110.40118 * 146.85411 * 18 17 15 36 36 H 1.08997 * 110.79313 * 279.99783 * 22 15 14 37 37 H 1.09010 * 110.78340 * 43.26835 * 22 15 14 38 38 H 1.07997 * 120.00439 * 359.97438 * 24 23 9 39 39 H 1.08004 * 119.99339 * 180.25385 * 25 24 23 40 40 H 1.08000 * 119.99890 * 179.78689 * 26 25 24 41 41 H 1.08007 * 120.00063 * 180.02562 * 27 26 25 42 42 H 1.08000 * 120.00734 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.0991 9 6 1.2575 -2.4953 -0.1400 10 1 0.3199 -2.3212 -0.6680 11 6 2.1101 -3.4908 -0.9293 12 6 2.2979 -2.9860 -2.3368 13 8 1.8004 -1.9379 -2.6741 14 8 3.0220 -3.6983 -3.2142 15 6 3.1660 -3.1484 -4.5503 16 1 3.1092 -2.0605 -4.5140 17 6 2.0648 -3.7042 -5.4704 18 6 2.4344 -3.3844 -6.9326 19 16 4.2614 -3.2984 -6.9540 20 8 4.6668 -1.9760 -7.2796 21 8 4.7761 -4.4001 -7.6893 22 6 4.5203 -3.5893 -5.1630 23 6 0.9669 -3.0568 1.2280 24 6 2.0025 -3.2922 2.1128 25 6 1.7354 -3.8032 3.3692 26 6 0.4337 -4.0877 3.7373 27 6 -0.6014 -3.8568 2.8507 28 6 -0.3349 -3.3419 1.5959 29 1 -0.4850 0.8401 0.0004 30 1 1.6093 -4.4586 -0.9542 31 1 3.0827 -3.5972 -0.4487 32 1 1.9880 -4.7836 -5.3395 33 1 1.1110 -3.2383 -5.2231 34 1 2.0068 -2.4270 -7.2303 35 1 2.0849 -4.1766 -7.5947 36 1 5.3353 -2.9723 -4.7846 37 1 4.7104 -4.6439 -4.9628 38 1 3.0200 -3.0741 1.8236 39 1 2.5442 -3.9833 4.0620 40 1 0.2255 -4.4902 4.7176 41 1 -1.6185 -4.0788 3.1384 42 1 -1.1435 -3.1619 0.9030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796665028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:44 Heat of formation + Delta-G solvation = -154.230250 kcal Electronic energy + Delta-G solvation = -26940.788085 eV Core-core repulsion = 22977.243310 eV Total energy + Delta-G solvation = -3963.544775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51409 -39.90557 -38.24652 -38.13216 -37.17853 -35.88690 -35.70124 -33.47262 -31.49266 -31.00783 -30.38658 -27.77809 -26.11367 -24.78059 -23.23187 -22.86121 -21.81642 -20.99013 -19.90956 -18.85523 -18.53411 -18.08703 -17.51705 -17.11710 -17.04172 -16.85433 -16.55545 -16.32150 -15.67480 -15.47973 -15.34931 -15.03365 -14.75313 -14.26350 -14.08321 -13.87947 -13.75143 -13.50472 -13.40830 -13.28504 -13.23421 -13.17361 -13.01696 -12.83807 -12.60975 -12.54066 -12.15070 -12.07484 -11.83261 -11.77058 -11.68406 -11.45586 -11.33058 -11.12520 -10.96356 -10.47230 -9.52912 -9.20589 -8.08251 -6.11887 -1.05803 0.79206 0.83204 1.30714 1.36463 1.39989 1.43807 1.48305 1.88501 2.43727 2.49888 2.97635 3.17478 3.24254 3.33379 3.41265 3.56212 3.79743 3.92090 4.14542 4.24833 4.36219 4.38209 4.39276 4.53248 4.56455 4.59265 4.70937 4.74180 4.77685 4.90973 4.94156 4.97379 5.15599 5.37111 5.47379 5.56125 5.60194 5.76006 5.85321 5.94548 6.13846 6.37804 6.46576 6.95873 7.04060 7.52474 9.00682 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003139 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.869943 B = 8919.094018 C =10114.842285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.030 3.970 3 Si 0.930 3.070 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.497 4.497 8 H 0.050 0.950 9 C 0.079 3.921 10 H 0.033 0.967 11 C -0.092 4.092 12 C 0.459 3.541 13 O -0.507 6.507 14 O -0.341 6.341 15 C 0.071 3.929 16 H 0.088 0.912 17 C -0.135 4.135 18 C -0.566 4.566 19 S 2.419 3.581 20 O -0.972 6.972 21 O -0.958 6.958 22 C -0.583 4.583 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.147 4.147 27 C -0.129 4.129 28 C -0.140 4.140 29 H 0.256 0.744 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.132 0.868 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -12.791 -6.170 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.169 4.169 3 Si 0.757 3.243 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.534 4.534 8 H 0.068 0.932 9 C 0.060 3.940 10 H 0.052 0.948 11 C -0.130 4.130 12 C 0.302 3.698 13 O -0.392 6.392 14 O -0.259 6.259 15 C 0.014 3.986 16 H 0.107 0.893 17 C -0.173 4.173 18 C -0.698 4.698 19 S 2.604 3.396 20 O -0.970 6.970 21 O -0.955 6.955 22 C -0.711 4.711 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.169 0.831 37 H 0.191 0.809 38 H 0.135 0.865 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.633 -12.171 -7.062 14.814 hybrid contribution -0.407 1.630 0.497 1.752 sum 4.226 -10.541 -6.565 13.117 Atomic orbital electron populations 1.70017 1.07008 1.26671 1.51426 1.25420 0.95262 1.01513 0.94732 0.86056 0.78835 0.80940 0.78453 1.20662 1.21506 1.19335 1.20996 0.92513 0.90915 1.49022 0.93181 1.17708 0.95849 0.91520 0.88888 0.94845 1.21565 1.03813 1.00602 0.86975 1.24234 0.74719 0.82380 0.88462 1.90723 1.46192 1.23615 1.78697 1.86617 1.67119 1.50793 1.21404 1.23384 0.93480 1.00106 0.81605 0.89347 1.22312 0.99606 1.05463 0.89965 1.30320 1.22036 1.14058 1.03336 1.08068 0.80110 0.73792 0.77653 1.93598 1.81876 1.38802 1.82684 1.93592 1.78656 1.54370 1.68902 1.30921 1.03026 1.14371 1.22778 1.20448 0.93148 0.92888 0.98133 1.21064 0.99003 1.00135 0.94333 1.21371 0.97551 0.99527 0.96104 1.21269 0.92662 1.02389 1.00159 1.21291 0.99938 0.99858 0.93602 1.21111 0.96360 1.00853 0.97534 0.93548 0.87424 0.87418 0.86236 0.89182 0.83088 0.80684 0.83142 0.80872 0.86520 0.84289 0.84015 0.85034 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.35 12.87 21.44 0.28 -53.07 16 2 C 0.03 1.69 5.45 84.65 0.46 2.15 16 3 Si 0.93 44.80 29.54 68.60 2.03 46.82 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.50 -25.78 6.37 25.60 0.16 -25.62 16 8 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.08 3.63 1.67 -12.29 -0.02 3.61 16 10 H 0.03 1.79 6.98 -2.39 -0.02 1.77 16 11 C -0.09 -3.31 5.06 29.85 0.15 -3.16 16 12 C 0.46 17.18 7.70 71.24 0.55 17.73 16 13 O -0.51 -23.43 14.20 21.97 0.31 -23.12 16 14 O -0.34 -9.89 9.95 -51.36 -0.51 -10.40 16 15 C 0.07 1.68 2.91 31.59 0.09 1.78 16 16 H 0.09 2.48 7.15 -2.39 -0.02 2.46 16 17 C -0.13 -2.35 6.09 31.29 0.19 -2.16 16 18 C -0.57 -6.95 7.26 72.38 0.53 -6.43 16 19 S 2.42 41.33 6.11 -56.49 -0.34 40.99 16 20 O -0.97 -25.08 18.14 -127.49 -2.31 -27.39 16 21 O -0.96 -21.08 18.15 -127.49 -2.31 -23.39 16 22 C -0.58 -9.60 7.01 72.68 0.51 -9.10 16 23 C -0.05 -1.91 4.77 -19.86 -0.09 -2.01 16 24 C -0.13 -4.70 8.86 22.27 0.20 -4.50 16 25 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 26 C -0.15 -4.34 10.05 22.27 0.22 -4.12 16 27 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 28 C -0.14 -5.65 9.67 22.27 0.22 -5.43 16 29 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.11 3.49 7.78 -2.38 -0.02 3.47 16 32 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.18 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.15 2.32 8.14 -2.39 -0.02 2.31 16 37 H 0.17 2.04 8.14 -2.38 -0.02 2.03 16 38 H 0.12 4.13 7.76 -2.91 -0.02 4.11 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 40 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 41 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.10 4.12 7.95 -2.91 -0.02 4.10 16 Total: -1.00 -78.10 368.16 1.77 -76.34 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.02 Total: 18.25 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 3.61 Total: -45.02 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.28 Total: -53.07 kcal Atomic # 8 Polarization: -79.48 SS G_CDS: -4.83 Total: -84.31 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 41.33 SS G_CDS: -0.34 Total: 40.99 kcal Total: -78.10 1.77 -76.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796665028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.892 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds