Wall clock time and date at job start Tue Mar 31 2020 20:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00004 * 2 1 4 4 H 1.48500 * 109.46820 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46994 * 120.00244 * 3 2 1 6 6 H 1.48505 * 109.46892 * 240.00333 * 3 2 1 7 7 C 1.37875 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00153 * 173.45827 * 7 2 1 9 9 C 1.50698 * 119.99940 * 353.45697 * 7 2 1 10 10 H 1.08999 * 109.47155 * 334.28891 * 9 7 2 11 11 C 1.53004 * 109.47004 * 214.28941 * 9 7 2 12 12 C 1.50702 * 109.47050 * 65.00057 * 11 9 7 13 13 O 1.20829 * 119.99967 * 0.02562 * 12 11 9 14 14 O 1.34225 * 119.99933 * 179.97438 * 12 11 9 15 15 C 1.45206 * 117.00289 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.63500 * 330.43026 * 15 14 12 17 17 C 1.53878 * 109.64629 * 210.00184 * 15 14 12 18 18 C 1.55050 * 106.62083 * 192.96596 * 17 15 14 19 19 S 1.83283 * 102.56846 * 42.43078 * 18 17 15 20 20 O 1.42095 * 109.35451 * 90.18671 * 19 18 17 21 21 O 1.42104 * 109.35446 * 223.39002 * 19 18 17 22 22 C 1.54161 * 109.64955 * 90.72159 * 15 14 12 23 23 C 1.50695 * 109.47054 * 94.28946 * 9 7 2 24 24 C 1.38232 * 120.00114 * 58.69388 * 23 9 7 25 25 C 1.38238 * 120.00068 * 179.78879 * 24 23 9 26 26 C 1.38233 * 119.99766 * 0.45478 * 25 24 23 27 27 C 1.38227 * 120.00301 * 359.77538 * 26 25 24 28 28 C 1.38236 * 120.00131 * 238.95960 * 23 9 7 29 29 H 0.97003 * 120.00287 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.47071 * 184.99758 * 11 9 7 31 31 H 1.08995 * 109.47337 * 305.00109 * 11 9 7 32 32 H 1.09001 * 110.02511 * 312.25155 * 17 15 14 33 33 H 1.08993 * 110.02683 * 73.67224 * 17 15 14 34 34 H 1.08993 * 110.79136 * 160.70645 * 18 17 15 35 35 H 1.09005 * 110.78685 * 283.97471 * 18 17 15 36 36 H 1.09004 * 110.32193 * 266.67205 * 22 15 14 37 37 H 1.09011 * 110.31663 * 28.86112 * 22 15 14 38 38 H 1.08001 * 120.00056 * 359.97438 * 24 23 9 39 39 H 1.08002 * 119.99773 * 180.24963 * 25 24 23 40 40 H 1.08007 * 119.99593 * 179.78825 * 26 25 24 41 41 H 1.08000 * 120.00321 * 179.97438 * 27 26 25 42 42 H 1.08002 * 120.00130 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0793 -1.1970 -0.1071 9 6 1.2584 -2.4949 0.1476 10 1 0.3232 -2.3190 0.6792 11 6 2.1149 -3.4870 0.9370 12 6 2.3090 -2.9766 2.3416 13 8 1.8128 -1.9272 2.6770 14 8 3.0323 -3.6882 3.2203 15 6 3.1770 -3.1360 4.5554 16 1 3.1376 -2.0477 4.5079 17 6 4.5228 -3.5793 5.1556 18 6 4.4656 -3.2444 6.6684 19 16 2.7710 -3.7691 7.1292 20 8 2.7946 -5.1290 7.5405 21 8 2.1847 -2.7837 7.9686 22 6 2.0389 -3.6543 5.4569 23 6 0.9616 -3.0619 -1.2167 24 6 1.9968 -3.3425 -2.0887 25 6 1.7249 -3.8667 -3.3386 26 6 0.4171 -4.1016 -3.7199 27 6 -0.6184 -3.8166 -2.8497 28 6 -0.3462 -3.2964 -1.5983 29 1 -0.4851 0.8400 0.0004 30 1 1.6143 -4.4549 0.9681 31 1 3.0852 -3.5953 0.4524 32 1 4.6587 -4.6517 5.0156 33 1 5.3398 -3.0341 4.6832 34 1 5.2113 -3.8169 7.2198 35 1 4.6010 -2.1755 6.8334 36 1 1.2054 -2.9518 5.4559 37 1 1.7072 -4.6367 5.1206 38 1 3.0183 -3.1549 -1.7925 39 1 2.5340 -4.0896 -4.0184 40 1 0.2044 -4.5080 -4.6978 41 1 -1.6402 -3.9997 -3.1478 42 1 -1.1553 -3.0736 -0.9184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796665029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:49 Heat of formation + Delta-G solvation = -155.266222 kcal Electronic energy + Delta-G solvation = -26970.508771 eV Core-core repulsion = 23006.919073 eV Total energy + Delta-G solvation = -3963.589698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50356 -39.91239 -38.25972 -38.11504 -37.16331 -35.89116 -35.66594 -33.47952 -31.50017 -30.94739 -30.35240 -27.82452 -26.27786 -24.70483 -23.20121 -22.68035 -21.87785 -20.97244 -19.91312 -18.81537 -18.55654 -18.05873 -17.66713 -17.33998 -16.99977 -16.66314 -16.56234 -16.34059 -15.69099 -15.48214 -15.20756 -14.97629 -14.62184 -14.38985 -13.99199 -13.92724 -13.75702 -13.49671 -13.41601 -13.31558 -13.23320 -13.18520 -13.03767 -12.82915 -12.60286 -12.53895 -12.23641 -11.95132 -11.83791 -11.77638 -11.71301 -11.38841 -11.26853 -11.19928 -10.97757 -10.47328 -9.53594 -9.21266 -8.07856 -6.12018 -1.03901 0.78507 0.82784 1.36946 1.39687 1.40322 1.44442 1.49486 1.80282 2.44104 2.52975 3.00011 3.17103 3.24431 3.33528 3.50031 3.52451 3.82291 3.98783 4.12997 4.23419 4.35525 4.38013 4.42384 4.52243 4.55721 4.56787 4.71087 4.73543 4.83067 4.92081 4.94878 4.98116 5.15628 5.36660 5.47342 5.56361 5.59368 5.75734 5.84609 5.93815 6.13884 6.36639 6.45821 6.95808 7.04936 7.52342 9.01107 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.003199 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.817288 B = 8751.416553 C = 9918.313116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.495 4.495 8 H 0.053 0.947 9 C 0.078 3.922 10 H 0.029 0.971 11 C -0.093 4.093 12 C 0.460 3.540 13 O -0.508 6.508 14 O -0.345 6.345 15 C 0.080 3.920 16 H 0.091 0.909 17 C -0.115 4.115 18 C -0.553 4.553 19 S 2.416 3.584 20 O -0.961 6.961 21 O -0.976 6.976 22 C -0.624 4.624 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.147 4.147 27 C -0.130 4.130 28 C -0.141 4.141 29 H 0.255 0.745 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.149 -10.939 5.491 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.060 3.940 10 H 0.047 0.953 11 C -0.130 4.130 12 C 0.303 3.697 13 O -0.394 6.394 14 O -0.263 6.263 15 C 0.024 3.976 16 H 0.109 0.891 17 C -0.153 4.153 18 C -0.686 4.686 19 S 2.601 3.399 20 O -0.958 6.958 21 O -0.973 6.973 22 C -0.752 4.752 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.148 4.148 28 C -0.159 4.159 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.198 0.802 35 H 0.179 0.821 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.403 -10.750 6.505 15.693 hybrid contribution -0.165 1.849 -0.552 1.936 sum 9.238 -8.901 5.953 14.142 Atomic orbital electron populations 1.70036 1.07198 1.26682 1.51443 1.25485 0.95273 1.01778 0.94721 0.85985 0.78740 0.80568 0.78580 1.21780 1.20313 1.19215 1.20998 0.92662 0.90737 1.48888 0.92841 1.17709 0.95719 0.91711 0.88902 0.95277 1.21567 1.03892 1.00367 0.87195 1.24201 0.74732 0.82404 0.88400 1.90718 1.46140 1.23789 1.78727 1.86593 1.67128 1.50830 1.21784 1.23243 0.93976 1.00326 0.80099 0.89069 1.22313 0.95218 1.06380 0.91395 1.30468 1.19812 1.14724 1.03563 1.08221 0.80784 0.74363 0.76556 1.93583 1.86911 1.34870 1.80459 1.93575 1.77319 1.61923 1.64461 1.31090 1.09536 1.12287 1.22304 1.20448 0.93089 0.92917 0.98187 1.21073 0.98977 1.00036 0.94420 1.21380 0.97441 0.99493 0.96118 1.21271 0.92639 1.02402 1.00170 1.21282 0.99973 0.99816 0.93727 1.21091 0.96362 1.00951 0.97512 0.93622 0.87834 0.87014 0.86263 0.85702 0.80227 0.82074 0.84961 0.82723 0.86194 0.84071 0.83981 0.85208 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.00 12.87 21.45 0.28 -53.73 16 2 C 0.03 1.49 5.45 84.66 0.46 1.95 16 3 Si 0.93 44.43 29.54 68.60 2.03 46.45 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.50 -25.63 6.46 25.60 0.17 -25.46 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 9 C 0.08 3.64 1.67 -12.29 -0.02 3.62 16 10 H 0.03 1.59 6.97 -2.39 -0.02 1.58 16 11 C -0.09 -3.37 5.03 29.85 0.15 -3.22 16 12 C 0.46 17.40 7.69 71.24 0.55 17.94 16 13 O -0.51 -23.81 14.20 21.95 0.31 -23.50 16 14 O -0.35 -9.99 9.88 -51.37 -0.51 -10.50 16 15 C 0.08 1.85 2.88 31.28 0.09 1.94 16 16 H 0.09 2.39 7.15 -2.39 -0.02 2.37 16 17 C -0.11 -1.46 6.15 31.59 0.19 -1.27 16 18 C -0.55 -5.12 7.31 72.68 0.53 -4.59 16 19 S 2.42 43.88 6.11 -56.49 -0.34 43.54 16 20 O -0.96 -22.76 18.14 -127.49 -2.31 -25.07 16 21 O -0.98 -25.84 18.15 -127.49 -2.31 -28.16 16 22 C -0.62 -13.36 6.96 72.38 0.50 -12.86 16 23 C -0.05 -1.95 4.77 -19.87 -0.09 -2.04 16 24 C -0.13 -4.66 8.86 22.27 0.20 -4.46 16 25 C -0.13 -3.90 10.05 22.27 0.22 -3.67 16 26 C -0.15 -4.39 10.05 22.27 0.22 -4.17 16 27 C -0.13 -4.42 10.05 22.27 0.22 -4.20 16 28 C -0.14 -5.84 9.67 22.27 0.22 -5.62 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 31 H 0.11 3.57 7.64 -2.39 -0.02 3.55 16 32 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.18 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.16 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.13 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.15 3.03 8.10 -2.38 -0.02 3.01 16 38 H 0.12 4.13 7.69 -2.91 -0.02 4.11 16 39 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.09 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -79.92 367.93 1.77 -78.14 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.02 Total: 18.91 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 3.61 Total: -46.10 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.28 Total: -53.73 kcal Atomic # 8 Polarization: -82.40 SS G_CDS: -4.82 Total: -87.22 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 43.88 SS G_CDS: -0.34 Total: 43.54 kcal Total: -79.92 1.77 -78.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796665029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.122 kcal (2) G-P(sol) polarization free energy of solvation -79.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds