Wall clock time and date at job start Tue Mar 31 2020 21:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42101 * 108.57747 * 2 1 4 4 O 1.42092 * 108.57936 * 131.02975 * 2 1 3 5 5 C 1.81408 * 101.92063 * 245.51576 * 2 1 3 6 6 C 1.52994 * 112.84881 * 304.91035 * 5 2 1 7 7 O 1.45198 * 109.47390 * 306.20499 * 6 5 2 8 8 C 1.34698 * 117.00475 * 180.02562 * 7 6 5 9 9 O 1.21470 * 119.99860 * 359.97438 * 8 7 6 10 10 C 1.47768 * 120.00114 * 180.02562 * 8 7 6 11 11 C 1.39965 * 120.03352 * 359.71526 * 10 8 7 12 12 C 1.38318 * 120.35326 * 179.76641 * 11 10 8 13 13 C 1.37751 * 120.41831 * 0.51719 * 12 11 10 14 14 C 1.40757 * 120.05397 * 359.74389 * 13 12 11 15 15 C 1.41436 * 120.17475 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00435 * 25.07651 * 15 14 13 17 17 C 1.39941 * 119.99675 * 205.07563 * 15 14 13 18 18 N 1.30821 * 120.00079 * 15.34381 * 17 15 14 19 19 Si 1.86800 * 119.99768 * 195.35115 * 17 15 14 20 20 H 1.48497 * 109.47448 * 90.00120 * 19 17 15 21 21 H 1.48508 * 109.46725 * 209.99713 * 19 17 15 22 22 H 1.48500 * 109.47232 * 329.99487 * 19 17 15 23 23 C 1.39055 * 120.02705 * 179.97438 * 10 8 7 24 24 C 1.53785 * 113.61397 * 173.71394 * 5 2 1 25 25 C 1.53965 * 87.01728 * 220.04844 * 24 5 2 26 26 C 1.53781 * 87.11097 * 25.36311 * 25 24 5 27 27 H 1.08998 * 109.47100 * 171.24252 * 1 2 3 28 28 H 1.08993 * 109.47085 * 291.24672 * 1 2 3 29 29 H 1.09002 * 109.47208 * 51.24609 * 1 2 3 30 30 H 1.09000 * 109.47241 * 66.20771 * 6 5 2 31 31 H 1.09000 * 109.47242 * 186.20266 * 6 5 2 32 32 H 1.07997 * 119.82104 * 0.02562 * 11 10 8 33 33 H 1.07998 * 119.78603 * 180.26445 * 12 11 10 34 34 H 1.08001 * 119.97393 * 179.76301 * 13 12 11 35 35 H 0.97001 * 120.00299 * 179.97438 * 18 17 15 36 36 H 1.07991 * 120.21130 * 359.95285 * 23 10 8 37 37 H 1.09002 * 113.61152 * 334.56424 * 24 5 2 38 38 H 1.08997 * 113.60981 * 105.46993 * 24 5 2 39 39 H 1.08998 * 113.53157 * 270.80954 * 25 24 5 40 40 H 1.08995 * 113.73862 * 139.94643 * 25 24 5 41 41 H 1.09003 * 113.61381 * 220.08983 * 26 25 24 42 42 H 1.08996 * 113.69307 * 89.19784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 1.0160 5 6 2.1887 -0.7356 -1.6153 6 6 1.5219 -2.0978 -1.8169 7 8 1.8675 -2.9741 -0.7119 8 6 1.3578 -4.2206 -0.7373 9 8 0.6436 -4.5661 -1.6572 10 6 1.6664 -5.1675 0.3543 11 6 2.4931 -4.7718 1.4121 12 6 2.7824 -5.6511 2.4398 13 6 2.2693 -6.9294 2.4292 14 6 1.4403 -7.3475 1.3712 15 6 0.9116 -8.6592 1.3580 16 1 0.7843 -9.1996 2.2843 17 6 0.5534 -9.2570 0.1445 18 7 0.9731 -8.7472 -0.9849 19 14 -0.5243 -10.7828 0.1371 20 1 -1.9522 -10.3800 0.0748 21 1 -0.1932 -11.6169 -1.0461 22 1 -0.2840 -11.5645 1.3767 23 6 1.1400 -6.4543 0.3289 24 6 3.6863 -0.7251 -1.9645 25 6 3.2666 -0.3644 -3.4013 26 6 1.9849 0.2305 -2.7944 27 1 -0.3633 -1.0157 -0.1565 28 1 -0.3633 0.3724 0.9578 29 1 -0.3634 0.6433 -0.8014 30 1 0.4400 -1.9707 -1.8551 31 1 1.8693 -2.5376 -2.7517 32 1 2.9040 -3.7731 1.4280 33 1 3.4180 -5.3347 3.2537 34 1 2.5029 -7.6114 3.2334 35 1 0.7251 -9.1617 -1.8260 36 1 0.5044 -6.7654 -0.4868 37 1 4.2462 0.0638 -1.4622 38 1 4.1612 -1.7025 -1.8798 39 1 3.0875 -1.2340 -4.0336 40 1 3.9109 0.3770 -3.8736 41 1 1.0882 0.0234 -3.3786 42 1 2.0773 1.2810 -2.5190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799702298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:33 Heat of formation + Delta-G solvation = -110.791044 kcal Electronic energy + Delta-G solvation = -27460.120186 eV Core-core repulsion = 23498.459076 eV Total energy + Delta-G solvation = -3961.661109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25913 -39.10890 -37.36851 -36.99961 -36.02911 -35.69499 -33.73526 -30.60549 -29.98768 -29.48376 -28.58126 -26.16472 -25.40389 -24.69864 -22.90185 -20.96646 -20.12188 -19.79369 -18.53765 -17.88614 -17.65817 -16.54111 -16.32972 -16.10900 -15.85510 -15.67861 -15.32132 -14.85913 -14.57560 -13.92811 -13.78018 -13.38111 -13.35873 -13.19296 -13.06931 -12.84262 -12.66143 -12.55259 -12.47093 -12.09330 -12.01369 -11.94720 -11.65751 -11.20275 -11.14143 -11.11334 -11.01164 -10.89112 -10.73446 -10.56302 -10.49542 -10.23260 -9.97395 -9.70770 -9.52059 -9.26461 -7.74399 -7.52223 -6.80365 -4.43767 -0.10997 1.93570 2.55503 2.78928 2.82603 3.06068 3.09234 3.13858 3.47567 3.54343 3.61857 3.90212 3.98089 4.16220 4.28509 4.34136 4.59065 4.65355 4.80807 4.95079 5.01917 5.20843 5.23637 5.28235 5.50464 5.51704 5.55058 5.62051 5.64203 5.71229 5.92398 6.17327 6.52420 6.57776 6.83732 6.94865 6.98410 7.18451 7.32686 7.71328 7.77933 7.92602 8.11136 8.43767 8.46474 8.78016 8.79931 10.14386 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.003077 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.040985 B = 9098.250302 C = 9718.855263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.426 3.574 3 O -0.944 6.944 4 O -0.907 6.907 5 C -0.572 4.572 6 C 0.096 3.904 7 O -0.347 6.347 8 C 0.516 3.484 9 O -0.518 6.518 10 C -0.120 4.120 11 C -0.183 4.183 12 C -0.107 4.107 13 C -0.196 4.196 14 C 0.092 3.908 15 C -0.461 4.461 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.793 5.793 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.088 4.088 24 C -0.102 4.102 25 C -0.128 4.128 26 C -0.108 4.108 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.283 0.717 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 16.139 -4.874 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.607 3.393 3 O -0.941 6.941 4 O -0.904 6.904 5 C -0.661 4.661 6 C 0.021 3.979 7 O -0.264 6.264 8 C 0.364 3.636 9 O -0.407 6.407 10 C -0.121 4.121 11 C -0.203 4.203 12 C -0.126 4.126 13 C -0.216 4.216 14 C 0.090 3.910 15 C -0.491 4.491 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.418 5.418 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.107 4.107 24 C -0.140 4.140 25 C -0.166 4.166 26 C -0.146 4.146 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.155 0.845 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.520 16.301 -4.765 16.991 hybrid contribution -1.143 -1.004 -0.836 1.736 sum -0.623 15.297 -5.601 16.302 Atomic orbital electron populations 1.30275 1.27137 1.11758 1.11566 1.07863 0.78588 0.75540 0.77303 1.93573 1.79573 1.34537 1.86387 1.93655 1.78295 1.66016 1.52443 1.31298 1.07945 1.05503 1.21385 1.22282 0.98899 0.85571 0.91164 1.86726 1.69577 1.24567 1.45576 1.21943 0.76111 0.79623 0.85960 1.90772 1.36490 1.77268 1.36192 1.18821 1.05662 0.93207 0.94452 1.20785 1.04014 0.99822 0.95652 1.20546 1.00237 0.94198 0.97570 1.21237 1.02461 0.96157 1.01743 1.17535 0.89870 0.92973 0.90615 1.19563 1.36993 0.98693 0.93809 0.90027 1.25943 0.94490 0.99100 0.95027 1.69763 1.34642 1.38381 0.98990 0.86242 0.80606 0.80651 0.78821 1.19240 1.20266 1.18579 1.21709 0.99269 0.89232 1.00533 1.22690 0.89631 1.04431 0.97237 1.22817 0.96484 1.01320 0.96018 1.22766 1.00758 0.97549 0.93516 0.85161 0.85160 0.85502 0.90095 0.89341 0.86748 0.88419 0.88351 0.90559 0.84476 0.88551 0.88716 0.89257 0.90248 0.89352 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.63 10.21 101.05 1.03 -4.60 16 2 S 2.43 28.31 4.84 -107.50 -0.52 27.79 16 3 O -0.94 -12.40 17.39 -57.83 -1.01 -13.40 16 4 O -0.91 -14.69 16.94 -64.37 -1.09 -15.78 16 5 C -0.57 -5.85 0.96 -89.81 -0.09 -5.94 16 6 C 0.10 1.23 4.32 37.15 0.16 1.39 16 7 O -0.35 -6.12 8.10 -46.01 -0.37 -6.49 16 8 C 0.52 11.15 7.90 34.63 0.27 11.43 16 9 O -0.52 -11.93 16.12 -19.24 -0.31 -12.24 16 10 C -0.12 -2.88 5.87 -105.05 -0.62 -3.50 16 11 C -0.18 -4.14 9.62 -38.91 -0.37 -4.52 16 12 C -0.11 -2.37 10.01 -39.73 -0.40 -2.77 16 13 C -0.20 -4.66 9.78 -38.81 -0.38 -5.04 16 14 C 0.09 2.42 5.57 -106.87 -0.60 1.82 16 15 C -0.46 -11.96 9.06 -37.73 -0.34 -12.30 16 16 H 0.08 2.01 7.89 -52.49 -0.41 1.60 16 17 C 0.07 1.80 5.19 -17.34 -0.09 1.71 16 18 N -0.79 -20.61 10.85 55.55 0.60 -20.00 16 19 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.09 -2.31 8.23 -38.42 -0.32 -2.63 16 24 C -0.10 -0.99 7.27 -25.82 -0.19 -1.18 16 25 C -0.13 -0.96 7.74 -25.82 -0.20 -1.16 16 26 C -0.11 -0.77 7.22 -25.92 -0.19 -0.95 16 27 H 0.13 1.15 7.05 -51.92 -0.37 0.79 16 28 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.08 0.88 7.06 -51.93 -0.37 0.52 16 31 H 0.09 1.10 7.31 -51.93 -0.38 0.72 16 32 H 0.11 2.44 7.59 -52.49 -0.40 2.05 16 33 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.14 3.83 5.69 -52.49 -0.30 3.53 16 37 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.09 0.67 7.62 -51.93 -0.40 0.27 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.11 0.67 7.52 -51.93 -0.39 0.28 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -32.91 364.94 -10.05 -42.96 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.52 Total: 6.40 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -2.31 Total: -28.22 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.60 Total: -20.00 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.78 Total: -47.92 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 28.31 SS G_CDS: -0.52 Total: 27.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.91 -10.05 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799702298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.831 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds