Wall clock time and date at job start Tue Mar 31 2020 21:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42101 * 108.57747 * 2 1 4 4 O 1.42092 * 108.57936 * 131.02975 * 2 1 3 5 5 C 1.81408 * 101.92063 * 245.51576 * 2 1 3 6 6 C 1.52994 * 112.84881 * 304.91035 * 5 2 1 7 7 O 1.45198 * 109.47390 * 306.20499 * 6 5 2 8 8 C 1.34698 * 117.00475 * 180.02562 * 7 6 5 9 9 O 1.21470 * 119.99860 * 359.97438 * 8 7 6 10 10 C 1.47768 * 120.00114 * 180.02562 * 8 7 6 11 11 C 1.39965 * 120.03352 * 359.71526 * 10 8 7 12 12 C 1.38318 * 120.35326 * 179.76641 * 11 10 8 13 13 C 1.37751 * 120.41831 * 0.51719 * 12 11 10 14 14 C 1.40757 * 120.05397 * 359.74389 * 13 12 11 15 15 C 1.41436 * 120.17475 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00435 * 25.07651 * 15 14 13 17 17 C 1.39941 * 119.99675 * 205.07563 * 15 14 13 18 18 N 1.30821 * 120.00079 * 15.34381 * 17 15 14 19 19 Si 1.86800 * 119.99768 * 195.35115 * 17 15 14 20 20 H 1.48497 * 109.47448 * 90.00120 * 19 17 15 21 21 H 1.48508 * 109.46725 * 209.99713 * 19 17 15 22 22 H 1.48500 * 109.47232 * 329.99487 * 19 17 15 23 23 C 1.39055 * 120.02705 * 179.97438 * 10 8 7 24 24 C 1.53785 * 113.61397 * 173.71394 * 5 2 1 25 25 C 1.53965 * 87.01728 * 220.04844 * 24 5 2 26 26 C 1.53781 * 87.11097 * 25.36311 * 25 24 5 27 27 H 1.08998 * 109.47100 * 171.24252 * 1 2 3 28 28 H 1.08993 * 109.47085 * 291.24672 * 1 2 3 29 29 H 1.09002 * 109.47208 * 51.24609 * 1 2 3 30 30 H 1.09000 * 109.47241 * 66.20771 * 6 5 2 31 31 H 1.09000 * 109.47242 * 186.20266 * 6 5 2 32 32 H 1.07997 * 119.82104 * 0.02562 * 11 10 8 33 33 H 1.07998 * 119.78603 * 180.26445 * 12 11 10 34 34 H 1.08001 * 119.97393 * 179.76301 * 13 12 11 35 35 H 0.97001 * 120.00299 * 179.97438 * 18 17 15 36 36 H 1.07991 * 120.21130 * 359.95285 * 23 10 8 37 37 H 1.09002 * 113.61152 * 334.56424 * 24 5 2 38 38 H 1.08997 * 113.60981 * 105.46993 * 24 5 2 39 39 H 1.08998 * 113.53157 * 270.80954 * 25 24 5 40 40 H 1.08995 * 113.73862 * 139.94643 * 25 24 5 41 41 H 1.09003 * 113.61381 * 220.08983 * 26 25 24 42 42 H 1.08996 * 113.69307 * 89.19784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 1.0160 5 6 2.1887 -0.7356 -1.6153 6 6 1.5219 -2.0978 -1.8169 7 8 1.8675 -2.9741 -0.7119 8 6 1.3578 -4.2206 -0.7373 9 8 0.6436 -4.5661 -1.6572 10 6 1.6664 -5.1675 0.3543 11 6 2.4931 -4.7718 1.4121 12 6 2.7824 -5.6511 2.4398 13 6 2.2693 -6.9294 2.4292 14 6 1.4403 -7.3475 1.3712 15 6 0.9116 -8.6592 1.3580 16 1 0.7843 -9.1996 2.2843 17 6 0.5534 -9.2570 0.1445 18 7 0.9731 -8.7472 -0.9849 19 14 -0.5243 -10.7828 0.1371 20 1 -1.9522 -10.3800 0.0748 21 1 -0.1932 -11.6169 -1.0461 22 1 -0.2840 -11.5645 1.3767 23 6 1.1400 -6.4543 0.3289 24 6 3.6863 -0.7251 -1.9645 25 6 3.2666 -0.3644 -3.4013 26 6 1.9849 0.2305 -2.7944 27 1 -0.3633 -1.0157 -0.1565 28 1 -0.3633 0.3724 0.9578 29 1 -0.3634 0.6433 -0.8014 30 1 0.4400 -1.9707 -1.8551 31 1 1.8693 -2.5376 -2.7517 32 1 2.9040 -3.7731 1.4280 33 1 3.4180 -5.3347 3.2537 34 1 2.5029 -7.6114 3.2334 35 1 0.7251 -9.1617 -1.8260 36 1 0.5044 -6.7654 -0.4868 37 1 4.2462 0.0638 -1.4622 38 1 4.1612 -1.7025 -1.8798 39 1 3.0875 -1.2340 -4.0336 40 1 3.9109 0.3770 -3.8736 41 1 1.0882 0.0234 -3.3786 42 1 2.0773 1.2810 -2.5190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799702298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:32 Heat of formation + Delta-G solvation = -130.715983 kcal Electronic energy + Delta-G solvation = -27460.984196 eV Core-core repulsion = 23498.459076 eV Total energy + Delta-G solvation = -3962.525120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65098 -40.14717 -39.10215 -38.06628 -37.20761 -37.03668 -35.60575 -32.31861 -31.36457 -30.88389 -29.53861 -27.27207 -26.82778 -25.76300 -24.44002 -22.84159 -21.59567 -20.79049 -19.67593 -19.43242 -18.69599 -18.03932 -17.70241 -17.31141 -17.03834 -16.84105 -16.62369 -16.42022 -16.01421 -15.24956 -15.11680 -14.74843 -14.60401 -14.37048 -14.04731 -13.95676 -13.88063 -13.58887 -13.50095 -13.40866 -13.11221 -13.02746 -12.95955 -12.92651 -12.82450 -12.56237 -12.20625 -12.03902 -11.99426 -11.88430 -11.69468 -11.54861 -11.51800 -11.27832 -11.10861 -10.82399 -9.61947 -9.42987 -8.65807 -6.39909 -0.98214 0.11529 0.97202 1.38993 1.46762 1.49685 1.53036 1.72766 1.78191 2.20366 2.59400 2.73346 2.79072 3.16746 3.33036 3.40601 3.63152 3.70829 3.94410 4.00009 4.10937 4.12633 4.23579 4.34634 4.43537 4.58962 4.68150 4.71519 4.82830 4.87321 4.92683 4.93282 5.04564 5.06189 5.12590 5.17237 5.29472 5.31763 5.45645 5.82848 5.91615 6.02055 6.22652 6.53248 6.77533 6.87206 6.88958 8.31034 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.003077 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.040985 B = 9098.250302 C = 9718.855263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.418 3.582 3 O -0.964 6.964 4 O -0.965 6.965 5 C -0.566 4.566 6 C 0.084 3.916 7 O -0.346 6.346 8 C 0.521 3.479 9 O -0.538 6.538 10 C -0.132 4.132 11 C -0.179 4.179 12 C -0.104 4.104 13 C -0.201 4.201 14 C 0.065 3.935 15 C -0.494 4.494 16 H 0.086 0.914 17 C 0.030 3.970 18 N -0.828 5.828 19 Si 0.986 3.014 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.253 1.253 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.096 4.096 27 H 0.130 0.870 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.288 0.712 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 17.447 -5.513 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.604 3.396 3 O -0.961 6.961 4 O -0.962 6.962 5 C -0.657 4.657 6 C 0.010 3.990 7 O -0.263 6.263 8 C 0.369 3.631 9 O -0.430 6.430 10 C -0.133 4.133 11 C -0.198 4.198 12 C -0.122 4.122 13 C -0.221 4.221 14 C 0.063 3.937 15 C -0.523 4.523 16 H 0.104 0.896 17 C -0.184 4.184 18 N -0.454 5.454 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.138 4.138 24 C -0.155 4.155 25 C -0.161 4.161 26 C -0.134 4.134 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.183 0.817 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.144 17.649 -5.372 18.449 hybrid contribution -0.854 -1.225 -0.654 1.630 sum -0.998 16.424 -6.026 17.523 Atomic orbital electron populations 1.30164 1.23056 1.12821 1.13915 1.07750 0.80102 0.74565 0.77175 1.93542 1.80889 1.34932 1.86752 1.93587 1.80383 1.67095 1.55128 1.31235 1.08333 1.04609 1.21504 1.22763 1.00840 0.85680 0.89726 1.86683 1.68805 1.23216 1.47551 1.21516 0.75882 0.80651 0.85016 1.90747 1.37430 1.78072 1.36720 1.19088 1.05322 0.93247 0.95648 1.21024 1.03110 1.00429 0.95236 1.20934 0.99749 0.93309 0.98162 1.21503 1.01889 0.97218 1.01440 1.17902 0.90775 0.93510 0.91544 1.19862 1.38627 0.99164 0.94637 0.89568 1.26839 0.95156 1.02227 0.94194 1.69852 1.35800 1.40080 0.99704 0.85138 0.78345 0.76609 0.79248 1.18916 1.19466 1.17599 1.21537 1.00881 0.90644 1.00772 1.22843 0.89352 1.03885 0.99449 1.22837 0.96911 1.01861 0.94491 1.22916 1.01698 0.97293 0.91477 0.85185 0.84045 0.81742 0.87785 0.88808 0.85461 0.84752 0.86704 0.90154 0.86915 0.88005 0.90431 0.89217 0.88385 0.86753 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -9.33 10.21 113.37 1.16 -8.18 16 2 S 2.42 53.79 4.84 -56.49 -0.27 53.51 16 3 O -0.96 -24.18 17.39 -127.37 -2.21 -26.40 16 4 O -0.96 -31.62 16.94 -121.12 -2.05 -33.67 16 5 C -0.57 -10.58 0.96 -10.27 -0.01 -10.59 16 6 C 0.08 2.03 4.32 71.98 0.31 2.34 16 7 O -0.35 -12.17 8.10 -50.80 -0.41 -12.58 16 8 C 0.52 22.93 7.90 70.34 0.56 23.48 16 9 O -0.54 -25.29 16.12 19.94 0.32 -24.97 16 10 C -0.13 -6.48 5.87 -20.14 -0.12 -6.60 16 11 C -0.18 -8.07 9.62 22.71 0.22 -7.85 16 12 C -0.10 -4.48 10.01 22.17 0.22 -4.25 16 13 C -0.20 -9.55 9.78 22.77 0.22 -9.33 16 14 C 0.06 3.50 5.57 -21.32 -0.12 3.38 16 15 C -0.49 -26.28 9.06 23.47 0.21 -26.07 16 16 H 0.09 4.32 7.89 -2.91 -0.02 4.30 16 17 C 0.03 1.54 5.19 85.26 0.44 1.98 16 18 N -0.83 -44.60 10.85 21.82 0.24 -44.36 16 19 Si 0.99 38.35 29.59 68.60 2.03 40.38 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 22 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 23 C -0.12 -6.49 8.23 23.02 0.19 -6.30 16 24 C -0.12 -2.16 7.27 31.18 0.23 -1.93 16 25 C -0.12 -1.52 7.74 31.18 0.24 -1.28 16 26 C -0.10 -1.03 7.22 31.12 0.22 -0.80 16 27 H 0.13 1.99 7.05 -2.39 -0.02 1.97 16 28 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 2.04 7.06 -2.39 -0.02 2.02 16 31 H 0.09 2.21 7.31 -2.39 -0.02 2.19 16 32 H 0.13 5.39 7.59 -2.91 -0.02 5.37 16 33 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 34 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 35 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 36 H 0.11 6.66 5.69 -2.92 -0.02 6.65 16 37 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 38 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.09 1.13 7.62 -2.39 -0.02 1.11 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 41 H 0.11 0.70 8.10 -2.39 -0.02 0.68 16 42 H 0.12 1.05 7.52 -2.39 -0.02 1.03 16 Total: -1.00 -74.57 364.94 2.65 -71.92 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 1.04 Total: 28.17 kcal Atomic # 6 Polarization: -55.98 SS G_CDS: 3.98 Total: -52.00 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.24 Total: -44.36 kcal Atomic # 8 Polarization: -93.26 SS G_CDS: -4.36 Total: -97.62 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Atomic # 16 Polarization: 53.79 SS G_CDS: -0.27 Total: 53.51 kcal Total: -74.57 2.65 -71.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799702298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.797 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds