Wall clock time and date at job start Tue Mar 31 2020 21:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 108.57975 * 2 1 4 4 O 1.42106 * 108.57761 * 228.97617 * 2 1 3 5 5 C 1.81400 * 101.92330 * 114.49043 * 2 1 3 6 6 C 1.53002 * 115.54979 * 55.36080 * 5 2 1 7 7 O 1.45199 * 109.47230 * 39.14904 * 6 5 2 8 8 C 1.34222 * 116.99672 * 179.97438 * 7 6 5 9 9 O 1.20822 * 120.00547 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99466 * 180.02562 * 8 7 6 11 11 C 1.50710 * 109.46805 * 179.97438 * 10 8 7 12 12 C 1.37627 * 120.13092 * 264.99764 * 11 10 8 13 13 C 1.38610 * 120.25120 * 180.29662 * 12 11 10 14 14 C 1.38659 * 120.49740 * 359.45222 * 13 12 11 15 15 C 1.37594 * 120.24718 * 0.54614 * 14 13 12 16 16 C 1.40700 * 120.12177 * 85.02322 * 11 10 8 17 17 C 1.41392 * 120.24754 * 359.95440 * 16 11 10 18 18 H 1.07999 * 120.00353 * 332.34028 * 17 16 11 19 19 C 1.39947 * 120.00005 * 152.33412 * 17 16 11 20 20 N 1.30827 * 119.99946 * 346.72638 * 19 17 16 21 21 Si 1.86798 * 120.00070 * 166.72040 * 19 17 16 22 22 H 1.48499 * 109.46911 * 90.00525 * 21 19 17 23 23 H 1.48500 * 109.47285 * 210.00354 * 21 19 17 24 24 H 1.48502 * 109.47229 * 330.00314 * 21 19 17 25 25 C 1.53003 * 117.49921 * 201.03073 * 5 2 1 26 26 C 1.53000 * 117.49859 * 269.68885 * 5 2 1 27 27 H 1.09003 * 109.46625 * 309.91514 * 1 2 3 28 28 H 1.08999 * 109.46849 * 69.91260 * 1 2 3 29 29 H 1.09000 * 109.47207 * 189.91518 * 1 2 3 30 30 H 1.09001 * 109.47098 * 279.14722 * 6 5 2 31 31 H 1.09005 * 109.46720 * 159.14959 * 6 5 2 32 32 H 1.08997 * 109.47471 * 60.00690 * 10 8 7 33 33 H 1.08996 * 109.47406 * 299.99640 * 10 8 7 34 34 H 1.08002 * 119.87634 * 0.02699 * 12 11 10 35 35 H 1.08002 * 119.75296 * 179.70603 * 13 12 11 36 36 H 1.08002 * 119.87353 * 180.30288 * 14 13 12 37 37 H 1.08004 * 120.12286 * 179.74306 * 15 14 13 38 38 H 0.97001 * 119.99710 * 179.97438 * 20 19 17 39 39 H 1.08994 * 117.49876 * 214.99776 * 25 5 2 40 40 H 1.09007 * 117.49716 * 0.02562 * 25 5 2 41 41 H 1.09003 * 117.49479 * 359.97438 * 26 5 2 42 42 H 1.08994 * 117.49885 * 144.99439 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 1.5574 -2.1041 1.8795 7 8 1.6009 -2.8998 0.6657 8 6 1.0835 -4.1367 0.7291 9 8 0.6095 -4.5410 1.7643 10 6 1.0938 -5.0211 -0.4911 11 6 0.4597 -6.3467 -0.1560 12 6 1.2450 -7.4131 0.2184 13 6 0.6650 -8.6351 0.5211 14 6 -0.7111 -8.7948 0.4618 15 6 -1.5157 -7.7424 0.0900 16 6 -0.9373 -6.4987 -0.2253 17 6 -1.7542 -5.4100 -0.6082 18 1 -1.4268 -4.3977 -0.4225 19 6 -2.9868 -5.6442 -1.2281 20 7 -3.2721 -6.8354 -1.6877 21 14 -4.2249 -4.2559 -1.3991 22 1 -3.9961 -3.5439 -2.6821 23 1 -5.6007 -4.8146 -1.3816 24 1 -4.0622 -3.3056 -0.2697 25 6 3.5742 -0.4706 2.2079 26 6 2.3419 0.2134 2.8054 27 1 -0.3633 0.6594 0.7883 28 1 -0.3633 0.3530 -0.9652 29 1 -0.3633 -1.0123 0.1770 30 1 0.5211 -1.9722 2.1905 31 1 2.1114 -2.6136 2.6680 32 1 2.1221 -5.1822 -0.8145 33 1 0.5317 -4.5414 -1.2924 34 1 2.3176 -7.2987 0.2722 35 1 1.2892 -9.4679 0.8094 36 1 -1.1527 -9.7501 0.7045 37 1 -2.5870 -7.8702 0.0404 38 1 -4.1266 -6.9977 -2.1170 39 1 4.0357 -1.2709 2.7862 40 1 4.2603 0.1464 1.6275 41 1 2.2179 1.2799 2.6177 42 1 1.9929 -0.1370 3.7767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799709539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:29 Heat of formation + Delta-G solvation = -106.879949 kcal Electronic energy + Delta-G solvation = -27492.771667 eV Core-core repulsion = 23531.280155 eV Total energy + Delta-G solvation = -3961.491512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12924 -38.18977 -37.55074 -37.00940 -36.06239 -35.66663 -33.67397 -31.88800 -29.80745 -29.52276 -28.34677 -26.66872 -25.05795 -23.05956 -22.38774 -21.32437 -20.96906 -19.39152 -18.67985 -17.60973 -17.24189 -16.96907 -16.49515 -16.07221 -15.86887 -15.58010 -15.31780 -14.77026 -14.49414 -13.99831 -13.74121 -13.65411 -13.30687 -13.26164 -12.95154 -12.65281 -12.48603 -12.16996 -12.12724 -11.97186 -11.87053 -11.62097 -11.57217 -11.38165 -11.20527 -11.11416 -11.05172 -10.95413 -10.77987 -10.59677 -10.45314 -10.25144 -9.84254 -9.55387 -9.43884 -9.24189 -7.40063 -7.34869 -6.77535 -4.42905 -0.10177 2.42823 2.58237 2.77846 2.83236 2.91577 3.02379 3.05250 3.20811 3.25859 3.50117 3.87966 3.88379 4.16724 4.34070 4.35373 4.62021 4.73941 4.93227 5.03358 5.10517 5.15866 5.22476 5.36060 5.50461 5.55404 5.63416 5.73932 5.96077 6.02440 6.24128 6.41410 6.45980 6.67051 6.83162 7.02762 7.22995 7.35237 7.57826 7.84661 7.98706 8.06221 8.24272 8.34510 8.58055 8.84315 8.93600 10.16395 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003978 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.283939 B = 7036.479228 C = 8529.846172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.458 3.542 3 O -0.946 6.946 4 O -0.909 6.909 5 C -0.640 4.640 6 C 0.113 3.887 7 O -0.363 6.363 8 C 0.464 3.536 9 O -0.491 6.491 10 C -0.043 4.043 11 C -0.193 4.193 12 C -0.078 4.078 13 C -0.237 4.237 14 C -0.105 4.105 15 C -0.155 4.155 16 C 0.130 3.870 17 C -0.459 4.459 18 H 0.073 0.927 19 C 0.077 3.923 20 N -0.795 5.795 21 Si 0.902 3.098 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.262 1.262 25 C -0.114 4.114 26 C -0.117 4.117 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.280 0.720 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 13.337 5.560 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.637 3.363 3 O -0.943 6.943 4 O -0.906 6.906 5 C -0.727 4.727 6 C 0.038 3.962 7 O -0.282 6.282 8 C 0.306 3.694 9 O -0.376 6.376 10 C -0.080 4.080 11 C -0.195 4.195 12 C -0.096 4.096 13 C -0.256 4.256 14 C -0.124 4.124 15 C -0.174 4.174 16 C 0.128 3.872 17 C -0.489 4.489 18 H 0.091 0.909 19 C -0.141 4.141 20 N -0.420 5.420 21 Si 0.726 3.274 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.152 4.152 26 C -0.155 4.155 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.180 13.383 5.132 16.031 hybrid contribution -1.342 0.112 0.675 1.506 sum 5.837 13.495 5.807 15.808 Atomic orbital electron populations 1.30211 1.26120 1.12192 1.11664 1.06796 0.78649 0.74908 0.75942 1.93571 1.79986 1.34504 1.86228 1.93628 1.78743 1.66449 1.51793 1.31778 1.12505 1.07476 1.20935 1.21975 1.01111 0.85886 0.87240 1.86650 1.75656 1.28322 1.37550 1.24586 0.73576 0.79274 0.91920 1.90650 1.41362 1.73324 1.32241 1.20032 1.02452 0.92463 0.93037 1.19096 0.93753 0.92512 1.14126 1.20335 0.96837 0.93445 0.98983 1.20333 0.94643 0.96842 1.13818 1.20718 0.93760 0.97500 1.00399 1.21324 0.99450 0.93437 1.03234 1.17352 0.89862 0.92846 0.87165 1.19457 1.01185 0.93981 1.34275 0.90923 1.25865 0.98475 0.96463 0.93248 1.69796 1.22763 1.22164 1.27302 0.86405 0.79678 0.81647 0.79623 1.19282 1.19978 1.18635 1.22990 0.87997 1.02982 1.01248 1.22995 1.00499 0.97268 0.94759 0.85452 0.84993 0.84827 0.89828 0.89968 0.88959 0.87072 0.89477 0.89479 0.89427 0.86325 0.90856 0.86621 0.86945 0.86049 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -6.17 10.40 101.05 1.05 -5.12 16 2 S 2.46 28.47 5.15 -107.50 -0.55 27.92 16 3 O -0.95 -12.23 17.54 -57.83 -1.01 -13.25 16 4 O -0.91 -14.25 16.90 -64.80 -1.09 -15.35 16 5 C -0.64 -6.38 2.38 -90.62 -0.22 -6.60 16 6 C 0.11 1.42 4.94 37.16 0.18 1.60 16 7 O -0.36 -5.93 8.59 -45.10 -0.39 -6.31 16 8 C 0.46 9.06 7.58 36.01 0.27 9.33 16 9 O -0.49 -10.92 15.78 -18.75 -0.30 -11.21 16 10 C -0.04 -0.85 5.30 -29.03 -0.15 -1.01 16 11 C -0.19 -4.57 4.43 -103.91 -0.46 -5.03 16 12 C -0.08 -1.75 9.66 -39.67 -0.38 -2.14 16 13 C -0.24 -5.37 10.05 -39.29 -0.39 -5.76 16 14 C -0.11 -2.50 10.02 -39.66 -0.40 -2.90 16 15 C -0.16 -4.04 8.67 -38.88 -0.34 -4.37 16 16 C 0.13 3.39 5.55 -106.83 -0.59 2.80 16 17 C -0.46 -11.75 8.11 -37.74 -0.31 -12.06 16 18 H 0.07 1.78 6.72 -52.49 -0.35 1.43 16 19 C 0.08 1.89 5.21 -17.34 -0.09 1.80 16 20 N -0.79 -20.08 10.91 55.55 0.61 -19.47 16 21 Si 0.90 18.28 29.58 -169.99 -5.03 13.25 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.11 -0.92 9.92 -26.69 -0.26 -1.18 16 26 C -0.12 -0.81 9.84 -26.69 -0.26 -1.07 16 27 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.13 1.11 8.14 -51.92 -0.42 0.69 16 29 H 0.13 1.39 7.77 -51.92 -0.40 0.98 16 30 H 0.08 0.98 8.13 -51.93 -0.42 0.55 16 31 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 32 H 0.09 1.60 8.05 -51.93 -0.42 1.18 16 33 H 0.11 2.22 7.09 -51.93 -0.37 1.85 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.17 6.23 -52.48 -0.33 2.84 16 38 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 39 H 0.12 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.12 0.70 7.85 -51.93 -0.41 0.29 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -33.24 370.72 -10.16 -43.40 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.62 Total: 7.15 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -2.35 Total: -31.71 kcal Atomic # 7 Polarization: -20.08 SS G_CDS: 0.61 Total: -19.47 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -2.79 Total: -46.12 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: 28.47 SS G_CDS: -0.55 Total: 27.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.24 -10.16 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799709539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.479 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds