Wall clock time and date at job start Tue Mar 31 2020 21:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 108.57975 * 2 1 4 4 O 1.42106 * 108.57761 * 228.97617 * 2 1 3 5 5 C 1.81400 * 101.92330 * 114.49043 * 2 1 3 6 6 C 1.53002 * 115.54979 * 55.36080 * 5 2 1 7 7 O 1.45199 * 109.47230 * 39.14904 * 6 5 2 8 8 C 1.34222 * 116.99672 * 179.97438 * 7 6 5 9 9 O 1.20822 * 120.00547 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99466 * 180.02562 * 8 7 6 11 11 C 1.50710 * 109.46805 * 179.97438 * 10 8 7 12 12 C 1.37627 * 120.13092 * 264.99764 * 11 10 8 13 13 C 1.38610 * 120.25120 * 180.29662 * 12 11 10 14 14 C 1.38659 * 120.49740 * 359.45222 * 13 12 11 15 15 C 1.37594 * 120.24718 * 0.54614 * 14 13 12 16 16 C 1.40700 * 120.12177 * 85.02322 * 11 10 8 17 17 C 1.41392 * 120.24754 * 359.95440 * 16 11 10 18 18 H 1.07999 * 120.00353 * 332.34028 * 17 16 11 19 19 C 1.39947 * 120.00005 * 152.33412 * 17 16 11 20 20 N 1.30827 * 119.99946 * 346.72638 * 19 17 16 21 21 Si 1.86798 * 120.00070 * 166.72040 * 19 17 16 22 22 H 1.48499 * 109.46911 * 90.00525 * 21 19 17 23 23 H 1.48500 * 109.47285 * 210.00354 * 21 19 17 24 24 H 1.48502 * 109.47229 * 330.00314 * 21 19 17 25 25 C 1.53003 * 117.49921 * 201.03073 * 5 2 1 26 26 C 1.53000 * 117.49859 * 269.68885 * 5 2 1 27 27 H 1.09003 * 109.46625 * 309.91514 * 1 2 3 28 28 H 1.08999 * 109.46849 * 69.91260 * 1 2 3 29 29 H 1.09000 * 109.47207 * 189.91518 * 1 2 3 30 30 H 1.09001 * 109.47098 * 279.14722 * 6 5 2 31 31 H 1.09005 * 109.46720 * 159.14959 * 6 5 2 32 32 H 1.08997 * 109.47471 * 60.00690 * 10 8 7 33 33 H 1.08996 * 109.47406 * 299.99640 * 10 8 7 34 34 H 1.08002 * 119.87634 * 0.02699 * 12 11 10 35 35 H 1.08002 * 119.75296 * 179.70603 * 13 12 11 36 36 H 1.08002 * 119.87353 * 180.30288 * 14 13 12 37 37 H 1.08004 * 120.12286 * 179.74306 * 15 14 13 38 38 H 0.97001 * 119.99710 * 179.97438 * 20 19 17 39 39 H 1.08994 * 117.49876 * 214.99776 * 25 5 2 40 40 H 1.09007 * 117.49716 * 0.02562 * 25 5 2 41 41 H 1.09003 * 117.49479 * 359.97438 * 26 5 2 42 42 H 1.08994 * 117.49885 * 144.99439 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 1.5574 -2.1041 1.8795 7 8 1.6009 -2.8998 0.6657 8 6 1.0835 -4.1367 0.7291 9 8 0.6095 -4.5410 1.7643 10 6 1.0938 -5.0211 -0.4911 11 6 0.4597 -6.3467 -0.1560 12 6 1.2450 -7.4131 0.2184 13 6 0.6650 -8.6351 0.5211 14 6 -0.7111 -8.7948 0.4618 15 6 -1.5157 -7.7424 0.0900 16 6 -0.9373 -6.4987 -0.2253 17 6 -1.7542 -5.4100 -0.6082 18 1 -1.4268 -4.3977 -0.4225 19 6 -2.9868 -5.6442 -1.2281 20 7 -3.2721 -6.8354 -1.6877 21 14 -4.2249 -4.2559 -1.3991 22 1 -3.9961 -3.5439 -2.6821 23 1 -5.6007 -4.8146 -1.3816 24 1 -4.0622 -3.3056 -0.2697 25 6 3.5742 -0.4706 2.2079 26 6 2.3419 0.2134 2.8054 27 1 -0.3633 0.6594 0.7883 28 1 -0.3633 0.3530 -0.9652 29 1 -0.3633 -1.0123 0.1770 30 1 0.5211 -1.9722 2.1905 31 1 2.1114 -2.6136 2.6680 32 1 2.1221 -5.1822 -0.8145 33 1 0.5317 -4.5414 -1.2924 34 1 2.3176 -7.2987 0.2722 35 1 1.2892 -9.4679 0.8094 36 1 -1.1527 -9.7501 0.7045 37 1 -2.5870 -7.8702 0.0404 38 1 -4.1266 -6.9977 -2.1170 39 1 4.0357 -1.2709 2.7862 40 1 4.2603 0.1464 1.6275 41 1 2.2179 1.2799 2.6177 42 1 1.9929 -0.1370 3.7767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799709539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:28 Heat of formation + Delta-G solvation = -126.614536 kcal Electronic energy + Delta-G solvation = -27493.627422 eV Core-core repulsion = 23531.280155 eV Total energy + Delta-G solvation = -3962.347268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55993 -39.54517 -38.76099 -38.06697 -37.08588 -36.96569 -35.51001 -33.59925 -31.37935 -30.61581 -29.57171 -28.14203 -26.86594 -23.64658 -23.26240 -22.90468 -22.73782 -21.07554 -19.60320 -19.08520 -18.77763 -18.20793 -17.71782 -17.19287 -16.98378 -16.92823 -16.63876 -16.21107 -15.64135 -15.55577 -15.40193 -14.64478 -14.49428 -14.38270 -14.00131 -13.94594 -13.82316 -13.58348 -13.36057 -13.18046 -13.05435 -12.91507 -12.84345 -12.74743 -12.57724 -12.54678 -12.41198 -12.19393 -12.12788 -11.94754 -11.57187 -11.37476 -11.34362 -11.24400 -11.14320 -11.05502 -9.24257 -9.21710 -8.59338 -6.33808 -0.96468 0.90168 1.08795 1.31190 1.36000 1.47097 1.52608 1.63863 1.74326 2.19458 2.25960 2.66213 2.78124 3.05746 3.36079 3.50824 3.68623 3.77795 4.01819 4.05117 4.16841 4.21091 4.26594 4.35558 4.41544 4.50895 4.56629 4.58988 4.69406 4.79306 4.83116 4.90380 4.99780 5.03280 5.17802 5.33027 5.37025 5.51418 5.74765 6.01059 6.13044 6.19477 6.39047 6.70052 6.87339 6.96328 7.07151 8.36848 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003978 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.283939 B = 7036.479228 C = 8529.846172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.457 3.543 3 O -0.964 6.964 4 O -0.961 6.961 5 C -0.649 4.649 6 C 0.105 3.895 7 O -0.362 6.362 8 C 0.473 3.527 9 O -0.523 6.523 10 C -0.047 4.047 11 C -0.199 4.199 12 C -0.087 4.087 13 C -0.239 4.239 14 C -0.114 4.114 15 C -0.187 4.187 16 C 0.099 3.901 17 C -0.486 4.486 18 H 0.073 0.927 19 C 0.036 3.964 20 N -0.827 5.827 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.120 4.120 26 C -0.093 4.093 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.286 0.714 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 14.968 6.790 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.641 3.359 3 O -0.961 6.961 4 O -0.959 6.959 5 C -0.738 4.738 6 C 0.031 3.969 7 O -0.280 6.280 8 C 0.317 3.683 9 O -0.411 6.411 10 C -0.084 4.084 11 C -0.201 4.201 12 C -0.105 4.105 13 C -0.258 4.258 14 C -0.132 4.132 15 C -0.207 4.207 16 C 0.097 3.903 17 C -0.516 4.516 18 H 0.091 0.909 19 C -0.178 4.178 20 N -0.453 5.453 21 Si 0.788 3.212 22 H -0.182 1.182 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.158 4.158 26 C -0.130 4.130 27 H 0.178 0.822 28 H 0.160 0.840 29 H 0.143 0.857 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.835 15.035 6.331 18.097 hybrid contribution -1.425 -0.392 0.375 1.525 sum 6.410 14.643 6.706 17.334 Atomic orbital electron populations 1.30166 1.23582 1.12606 1.13674 1.06468 0.79461 0.73996 0.75989 1.93542 1.80897 1.34974 1.86728 1.93567 1.80331 1.67432 1.54526 1.31495 1.14652 1.06689 1.20980 1.22318 1.02270 0.86468 0.85858 1.86617 1.74660 1.27100 1.39595 1.24213 0.73003 0.80078 0.90961 1.90633 1.42942 1.74297 1.33266 1.20034 1.03674 0.91329 0.93394 1.19472 0.93246 0.94436 1.12942 1.20755 0.98490 0.93086 0.98142 1.20736 0.94464 0.97936 1.12645 1.20999 0.94501 0.97792 0.99921 1.21330 0.98970 0.94771 1.05609 1.17724 0.91355 0.93186 0.88065 1.19651 1.02458 0.93940 1.35507 0.90929 1.26668 0.99838 0.98859 0.92470 1.69864 1.23483 1.23999 1.27974 0.85418 0.77260 0.78599 0.79897 1.18203 1.19253 1.18286 1.23245 0.87755 1.03635 1.01159 1.23292 0.98256 0.97412 0.94047 0.82165 0.84032 0.85660 0.88962 0.89244 0.86175 0.87515 0.86373 0.86451 0.87444 0.88215 0.90324 0.85531 0.86448 0.84511 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -11.13 10.40 113.37 1.18 -9.95 16 2 S 2.46 54.58 5.15 -56.49 -0.29 54.29 16 3 O -0.96 -23.81 17.54 -127.37 -2.23 -26.05 16 4 O -0.96 -30.49 16.90 -120.71 -2.04 -32.53 16 5 C -0.65 -11.60 2.38 -10.79 -0.03 -11.63 16 6 C 0.11 2.47 4.94 71.98 0.36 2.83 16 7 O -0.36 -11.56 8.59 -45.73 -0.39 -11.96 16 8 C 0.47 18.32 7.58 71.24 0.54 18.86 16 9 O -0.52 -23.23 15.78 21.98 0.35 -22.88 16 10 C -0.05 -1.89 5.30 29.11 0.15 -1.73 16 11 C -0.20 -9.45 4.43 -19.40 -0.09 -9.54 16 12 C -0.09 -3.80 9.66 22.21 0.21 -3.59 16 13 C -0.24 -10.50 10.05 22.46 0.23 -10.27 16 14 C -0.11 -5.42 10.02 22.22 0.22 -5.20 16 15 C -0.19 -10.06 8.67 22.73 0.20 -9.87 16 16 C 0.10 5.29 5.55 -21.29 -0.12 5.17 16 17 C -0.49 -25.56 8.11 23.46 0.19 -25.37 16 18 H 0.07 3.67 6.72 -2.91 -0.02 3.65 16 19 C 0.04 1.80 5.21 85.26 0.44 2.25 16 20 N -0.83 -43.06 10.91 21.83 0.24 -42.82 16 21 Si 0.97 37.65 29.58 68.60 2.03 39.68 16 22 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 C -0.12 -1.63 9.92 30.62 0.30 -1.32 16 26 C -0.09 -0.95 9.84 30.62 0.30 -0.64 16 27 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.12 2.45 7.77 -2.39 -0.02 2.43 16 30 H 0.09 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.09 1.99 7.93 -2.38 -0.02 1.97 16 32 H 0.12 4.02 8.05 -2.39 -0.02 4.00 16 33 H 0.11 4.34 7.09 -2.39 -0.02 4.32 16 34 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.10 5.60 6.23 -2.91 -0.02 5.59 16 38 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 39 H 0.13 1.44 8.08 -2.39 -0.02 1.42 16 40 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.14 1.04 7.85 -2.39 -0.02 1.02 16 42 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -73.91 370.72 2.79 -71.12 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 1.03 Total: 31.13 kcal Atomic # 6 Polarization: -64.10 SS G_CDS: 4.10 Total: -60.00 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.24 Total: -42.82 kcal Atomic # 8 Polarization: -89.09 SS G_CDS: -4.32 Total: -93.41 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Atomic # 16 Polarization: 54.58 SS G_CDS: -0.29 Total: 54.29 kcal Total: -73.91 2.79 -71.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799709539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.492 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds