Wall clock time and date at job start Tue Mar 31 2020 21:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.46570 * 179.97438 * 10 9 8 12 12 O 1.20824 * 120.00251 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99350 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99694 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47592 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47616 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.47451 * 180.02562 * 16 15 14 18 18 C 1.76201 * 100.00165 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99714 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99880 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46785 * 90.00563 * 22 20 18 24 24 H 1.48500 * 109.47415 * 210.00393 * 22 20 18 25 25 H 1.48497 * 109.47179 * 330.00354 * 22 20 18 26 26 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 27 27 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47426 * 300.00647 * 1 2 3 29 29 H 1.09001 * 109.46924 * 60.00321 * 1 2 3 30 30 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 34 34 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 35 35 H 1.09007 * 109.47290 * 300.00413 * 14 13 11 36 36 H 1.09003 * 109.46991 * 59.99959 * 14 13 11 37 37 H 1.09007 * 109.46972 * 300.00402 * 15 14 13 38 38 H 1.09003 * 109.47155 * 59.99853 * 15 14 13 39 39 H 1.09002 * 109.47118 * 299.99650 * 16 15 14 40 40 H 1.09003 * 109.47132 * 59.99652 * 16 15 14 41 41 H 0.97001 * 119.99590 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.11481 * 180.27741 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8198 -3.5789 0.0019 12 8 8.2885 -2.4653 0.0005 13 8 8.6309 -4.6485 0.0038 14 6 10.0600 -4.3920 0.0034 15 6 10.8169 -5.7216 0.0050 16 6 12.3228 -5.4514 0.0052 17 16 13.2182 -7.0244 0.0064 18 6 14.8776 -6.4319 0.0056 19 1 15.0716 -5.3696 0.0043 20 6 15.9353 -7.3306 0.0068 21 7 15.6988 -8.6255 0.0079 22 14 17.6945 -6.7026 0.0053 23 1 18.1611 -6.5341 1.4050 24 1 18.5682 -7.6791 -0.6935 25 1 17.7529 -5.3954 -0.6968 26 6 3.6404 -1.2782 0.0000 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.4665 -2.4911 0.0025 31 1 1.7017 -4.6157 0.0031 32 1 4.1607 -4.6171 0.0026 33 1 6.0283 -4.3212 0.8935 34 1 6.0283 -4.3235 -0.8864 35 1 10.3269 -3.8235 -0.8876 36 1 10.3268 -3.8205 0.8924 37 1 10.5501 -6.2905 0.8958 38 1 10.5500 -6.2928 -0.8842 39 1 12.5900 -4.8824 -0.8853 40 1 12.5894 -4.8804 0.8947 41 1 16.4380 -9.2536 0.0083 42 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805342680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:00 Heat of formation + Delta-G solvation = -141.277763 kcal Electronic energy + Delta-G solvation = -24221.673034 eV Core-core repulsion = 20258.689921 eV Total energy + Delta-G solvation = -3962.983113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15371 -40.50114 -39.57914 -37.71309 -36.70962 -33.62885 -32.47241 -32.28717 -31.70036 -29.82804 -29.05264 -26.48845 -25.46980 -24.36609 -23.00359 -21.71529 -21.37232 -20.34338 -18.73180 -17.79734 -17.39087 -17.32628 -17.24449 -16.60915 -16.27309 -16.10572 -15.79792 -15.47496 -15.05088 -14.84186 -14.63579 -14.33650 -14.28863 -13.66356 -13.33700 -13.28520 -13.02981 -12.81300 -12.76537 -12.58225 -12.31991 -12.16004 -11.68431 -11.64087 -11.41955 -11.21536 -11.04950 -10.95467 -10.74149 -10.61619 -10.38825 -10.31178 -9.67681 -9.63233 -9.10286 -8.86886 -8.40004 -6.60114 -6.27687 -3.99087 0.05655 0.81919 1.71529 1.86468 1.88823 2.97715 3.19740 3.20109 3.20775 3.27204 3.48458 3.58655 4.10143 4.17301 4.28074 4.31934 4.40532 4.45646 4.46657 4.53604 4.70458 4.85950 4.86691 5.02703 5.07270 5.08707 5.09193 5.31410 5.33296 5.35623 5.40332 5.62932 5.70616 5.71460 5.76502 5.79641 6.01564 6.06557 6.29122 6.38349 6.60319 6.71246 6.98628 7.48822 7.56518 8.32106 9.18950 10.80487 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.042937 B = 0.001339 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.961857 B =20903.804118 C =21519.412311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.395 3.605 3 O -0.452 6.452 4 C -0.134 4.134 5 C -0.112 4.112 6 C -0.090 4.090 7 C -0.179 4.179 8 C 0.121 3.879 9 O -0.292 6.292 10 C 0.068 3.932 11 C 0.462 3.538 12 O -0.485 6.485 13 O -0.351 6.351 14 C 0.074 3.926 15 C -0.098 4.098 16 C -0.116 4.116 17 S -0.123 6.123 18 C -0.519 4.519 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.869 5.869 22 Si 0.919 3.081 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.089 4.089 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.268 0.732 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.652 9.675 -0.012 35.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.273 3.727 3 O -0.327 6.327 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.108 4.108 7 C -0.197 4.197 8 C 0.076 3.924 9 O -0.205 6.205 10 C -0.009 4.009 11 C 0.302 3.698 12 O -0.370 6.370 13 O -0.268 6.268 14 C 0.000 4.000 15 C -0.136 4.136 16 C -0.264 4.264 17 S 0.105 5.895 18 C -0.667 4.667 19 H 0.092 0.908 20 C -0.137 4.137 21 N -0.505 5.505 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.108 4.108 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -33.292 9.471 -0.017 34.614 hybrid contribution 1.704 1.299 0.006 2.142 sum -31.589 10.770 -0.011 33.374 Atomic orbital electron populations 1.22239 0.93299 1.05009 1.05203 1.22512 0.91801 0.87365 0.71066 1.90576 1.72065 1.34284 1.35785 1.20326 0.93197 0.95290 1.04709 1.21445 1.00375 0.91248 0.99931 1.20960 0.93263 0.98511 0.98068 1.21601 0.95831 0.97242 1.05059 1.18842 0.81794 0.94139 0.97620 1.86128 1.16414 1.29150 1.88810 1.21935 0.87771 0.85511 1.05642 1.22726 0.89447 0.83509 0.74091 1.90739 1.77187 1.25785 1.43338 1.86415 1.20605 1.36117 1.83645 1.23382 0.73874 0.99791 1.02990 1.21301 0.93142 0.94725 1.04432 1.23187 0.95505 1.04267 1.03451 1.84640 1.02911 1.05023 1.96897 1.22698 0.90054 0.95210 1.58784 0.90814 1.25011 0.99597 0.94619 0.94453 1.70018 1.32432 1.00951 1.47090 0.86147 0.82189 0.78673 0.78423 1.20217 1.20703 1.19644 1.20680 0.92831 0.97177 1.00074 0.89599 0.88557 0.88553 0.84459 0.84667 0.84485 0.87311 0.87325 0.90821 0.90816 0.90231 0.90223 0.91654 0.91654 0.92225 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.63 10.19 36.01 0.37 -0.27 16 2 C 0.39 2.91 7.23 -30.68 -0.22 2.68 16 3 O -0.45 -5.13 17.09 5.59 0.10 -5.04 16 4 C -0.13 -0.97 5.87 -105.08 -0.62 -1.59 16 5 C -0.11 -0.52 9.44 -39.10 -0.37 -0.89 16 6 C -0.09 -0.41 10.02 -39.67 -0.40 -0.81 16 7 C -0.18 -1.06 9.04 -39.32 -0.36 -1.41 16 8 C 0.12 1.06 6.68 -39.29 -0.26 0.80 16 9 O -0.29 -3.08 9.67 -39.44 -0.38 -3.46 16 10 C 0.07 0.54 5.33 36.01 0.19 0.73 16 11 C 0.46 5.61 8.03 36.01 0.29 5.90 16 12 O -0.48 -7.72 16.25 -25.48 -0.41 -8.14 16 13 O -0.35 -4.37 10.22 -39.25 -0.40 -4.77 16 14 C 0.07 1.02 5.47 37.16 0.20 1.22 16 15 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 16 C -0.12 -2.24 5.67 37.16 0.21 -2.03 16 17 S -0.12 -3.13 21.44 -107.50 -2.30 -5.44 16 18 C -0.52 -14.69 9.50 30.94 0.29 -14.40 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 22 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 C -0.09 -0.83 9.54 -38.94 -0.37 -1.20 16 27 H 0.09 0.08 5.60 -51.93 -0.29 -0.22 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.14 0.22 5.92 -52.49 -0.31 -0.09 16 31 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 32 H 0.14 0.50 6.27 -52.49 -0.33 0.17 16 33 H 0.11 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.11 0.57 7.65 -51.93 -0.40 0.17 16 35 H 0.07 1.00 8.13 -51.92 -0.42 0.58 16 36 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 37 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 40 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -35.81 381.90 -8.70 -44.51 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -5.48 Total: -3.85 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.28 Total: -11.00 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.73 Total: -24.89 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.10 Total: -21.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.30 Total: -5.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.81 -8.70 -44.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805342680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.765 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds