Wall clock time and date at job start Tue Mar 31 2020 21:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.46570 * 179.97438 * 10 9 8 12 12 O 1.20824 * 120.00251 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99350 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99694 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47592 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47616 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.47451 * 180.02562 * 16 15 14 18 18 C 1.76201 * 100.00165 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99714 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99880 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46785 * 90.00563 * 22 20 18 24 24 H 1.48500 * 109.47415 * 210.00393 * 22 20 18 25 25 H 1.48497 * 109.47179 * 330.00354 * 22 20 18 26 26 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 27 27 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47426 * 300.00647 * 1 2 3 29 29 H 1.09001 * 109.46924 * 60.00321 * 1 2 3 30 30 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 34 34 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 35 35 H 1.09007 * 109.47290 * 300.00413 * 14 13 11 36 36 H 1.09003 * 109.46991 * 59.99959 * 14 13 11 37 37 H 1.09007 * 109.46972 * 300.00402 * 15 14 13 38 38 H 1.09003 * 109.47155 * 59.99853 * 15 14 13 39 39 H 1.09002 * 109.47118 * 299.99650 * 16 15 14 40 40 H 1.09003 * 109.47132 * 59.99652 * 16 15 14 41 41 H 0.97001 * 119.99590 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.11481 * 180.27741 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8198 -3.5789 0.0019 12 8 8.2885 -2.4653 0.0005 13 8 8.6309 -4.6485 0.0038 14 6 10.0600 -4.3920 0.0034 15 6 10.8169 -5.7216 0.0050 16 6 12.3228 -5.4514 0.0052 17 16 13.2182 -7.0244 0.0064 18 6 14.8776 -6.4319 0.0056 19 1 15.0716 -5.3696 0.0043 20 6 15.9353 -7.3306 0.0068 21 7 15.6988 -8.6255 0.0079 22 14 17.6945 -6.7026 0.0053 23 1 18.1611 -6.5341 1.4050 24 1 18.5682 -7.6791 -0.6935 25 1 17.7529 -5.3954 -0.6968 26 6 3.6404 -1.2782 0.0000 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.4665 -2.4911 0.0025 31 1 1.7017 -4.6157 0.0031 32 1 4.1607 -4.6171 0.0026 33 1 6.0283 -4.3212 0.8935 34 1 6.0283 -4.3235 -0.8864 35 1 10.3269 -3.8235 -0.8876 36 1 10.3268 -3.8205 0.8924 37 1 10.5501 -6.2905 0.8958 38 1 10.5500 -6.2928 -0.8842 39 1 12.5900 -4.8824 -0.8853 40 1 12.5894 -4.8804 0.8947 41 1 16.4380 -9.2536 0.0083 42 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805342680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:59 Heat of formation + Delta-G solvation = -162.344567 kcal Electronic energy + Delta-G solvation = -24222.586559 eV Core-core repulsion = 20258.689921 eV Total energy + Delta-G solvation = -3963.896638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91882 -41.26171 -40.24623 -38.36181 -37.71301 -34.97053 -34.59620 -32.76360 -32.21786 -30.38828 -29.61323 -28.05276 -27.27031 -24.91201 -23.48120 -22.88914 -22.43135 -20.91561 -19.63149 -19.33306 -18.49099 -18.21627 -18.07287 -17.17270 -16.96235 -16.90736 -16.86439 -16.41602 -16.13037 -16.07712 -15.80486 -15.53716 -14.92500 -14.72268 -14.36467 -14.27135 -13.90665 -13.81365 -13.58628 -13.31866 -13.16120 -13.03203 -12.96118 -12.67162 -12.65513 -12.45121 -12.42241 -12.21424 -12.14222 -11.73430 -11.58061 -11.45238 -11.15921 -10.86792 -10.37812 -10.11462 -9.38255 -8.68703 -8.39389 -6.15630 -0.44474 0.34603 0.88024 0.94408 1.31791 1.36485 1.38748 1.47926 1.70235 2.25023 2.36020 2.73508 2.95444 3.10981 3.24693 3.39423 3.72519 3.81365 3.91183 3.93485 3.95540 3.97368 4.04872 4.11755 4.15021 4.27725 4.29640 4.45191 4.48532 4.66377 4.66708 4.75373 4.87959 4.99860 5.06011 5.06204 5.21249 5.27446 5.31212 5.38834 5.39025 5.61708 6.16604 6.17462 6.48177 6.52348 7.03547 8.69925 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.042937 B = 0.001339 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.961857 B =20903.804118 C =21519.412311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.392 3.608 3 O -0.509 6.509 4 C -0.151 4.151 5 C -0.096 4.096 6 C -0.085 4.085 7 C -0.172 4.172 8 C 0.100 3.900 9 O -0.327 6.327 10 C 0.071 3.929 11 C 0.462 3.538 12 O -0.531 6.531 13 O -0.345 6.345 14 C 0.080 3.920 15 C -0.085 4.085 16 C -0.095 4.095 17 S -0.180 6.180 18 C -0.543 4.543 19 H 0.073 0.927 20 C 0.019 3.981 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.265 1.265 26 C -0.123 4.123 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.272 0.728 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.153 8.291 -0.002 37.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.273 3.727 3 O -0.388 6.388 4 C -0.152 4.152 5 C -0.113 4.113 6 C -0.103 4.103 7 C -0.190 4.190 8 C 0.056 3.944 9 O -0.242 6.242 10 C -0.005 4.005 11 C 0.305 3.695 12 O -0.419 6.419 13 O -0.261 6.261 14 C 0.005 3.995 15 C -0.123 4.123 16 C -0.244 4.244 17 S 0.049 5.951 18 C -0.691 4.691 19 H 0.091 0.909 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.193 1.193 24 H -0.198 1.198 25 H -0.189 1.189 26 C -0.143 4.143 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.194 0.806 31 H 0.192 0.808 32 H 0.183 0.817 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -35.830 8.059 -0.006 36.725 hybrid contribution 2.339 1.714 0.003 2.900 sum -33.491 9.773 -0.003 34.888 Atomic orbital electron populations 1.22293 0.89508 1.07313 1.05901 1.23292 0.93856 0.86617 0.68888 1.90556 1.73498 1.36023 1.38748 1.20515 0.92417 0.96660 1.05634 1.21899 1.02215 0.89978 0.97239 1.21482 0.92790 0.99909 0.96102 1.21966 0.96756 0.96890 1.03425 1.18969 0.81122 0.95000 0.99322 1.86062 1.17771 1.30801 1.89541 1.22207 0.84290 0.85191 1.08763 1.23639 0.91053 0.82540 0.72266 1.90726 1.78146 1.27434 1.45638 1.86404 1.19806 1.36310 1.83596 1.23108 0.74875 0.98354 1.03132 1.21109 0.90546 0.95787 1.04862 1.23088 0.97209 1.00421 1.03638 1.84569 1.03295 1.10198 1.97062 1.23065 0.91523 0.95411 1.59109 0.90912 1.26014 1.04235 0.94731 0.93658 1.70137 1.33971 1.02253 1.47818 0.85045 0.76389 0.78327 0.78839 1.19297 1.19805 1.18908 1.20668 0.94204 0.96580 1.02801 0.86474 0.87722 0.87718 0.80633 0.80846 0.81720 0.83926 0.83938 0.90789 0.90776 0.89819 0.89819 0.91439 0.91407 0.91862 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.81 10.19 71.24 0.73 -0.08 16 2 C 0.39 5.90 7.23 28.04 0.20 6.10 16 3 O -0.51 -12.82 17.09 -2.93 -0.05 -12.87 16 4 C -0.15 -2.15 5.87 -20.16 -0.12 -2.27 16 5 C -0.10 -0.56 9.44 22.58 0.21 -0.34 16 6 C -0.09 -0.39 10.02 22.21 0.22 -0.17 16 7 C -0.17 -1.50 9.04 22.44 0.20 -1.30 16 8 C 0.10 1.73 6.68 22.46 0.15 1.88 16 9 O -0.33 -7.01 9.67 -73.56 -0.71 -7.72 16 10 C 0.07 0.99 5.33 71.24 0.38 1.37 16 11 C 0.46 10.87 8.03 71.24 0.57 11.45 16 12 O -0.53 -17.32 16.25 28.40 0.46 -16.86 16 13 O -0.34 -8.09 10.22 -51.40 -0.53 -8.61 16 14 C 0.08 2.14 5.47 71.98 0.39 2.53 16 15 C -0.08 -2.54 5.60 30.59 0.17 -2.37 16 16 C -0.09 -3.66 5.67 71.98 0.41 -3.25 16 17 S -0.18 -9.31 21.44 -56.49 -1.21 -10.52 16 18 C -0.54 -31.04 9.50 67.95 0.65 -30.40 16 19 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 20 C 0.02 1.07 5.49 84.86 0.47 1.53 16 21 N -0.91 -53.88 13.22 21.65 0.29 -53.59 16 22 Si 0.99 43.63 29.55 68.60 2.03 45.65 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 26 C -0.12 -2.51 9.54 22.69 0.22 -2.30 16 27 H 0.12 -0.30 5.60 -2.39 -0.01 -0.32 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 29 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 30 H 0.18 -0.41 5.92 -2.91 -0.02 -0.43 16 31 H 0.17 -0.44 8.06 -2.91 -0.02 -0.47 16 32 H 0.17 0.42 6.27 -2.91 -0.02 0.40 16 33 H 0.14 1.02 7.66 -2.39 -0.02 1.00 16 34 H 0.14 1.02 7.65 -2.39 -0.02 1.00 16 35 H 0.07 1.97 8.13 -2.38 -0.02 1.95 16 36 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 37 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.11 2.83 7.65 -2.91 -0.02 2.80 16 Total: -1.00 -83.53 381.90 6.17 -77.36 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.04 Total: 4.77 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.85 Total: -17.62 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.29 Total: -53.59 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.82 Total: -46.06 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.21 Total: -10.52 kcal Total: -83.53 6.17 -77.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805342680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.983 kcal (2) G-P(sol) polarization free energy of solvation -83.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds