Wall clock time and date at job start Tue Mar 31 2020 20:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.46996 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.47188 * 29.99937 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99843 * 3 2 1 7 7 C 1.38800 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99944 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00033 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47236 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38262 * 119.94179 * 269.72262 * 17 16 14 19 19 C 1.38194 * 120.10924 * 179.77318 * 18 17 16 20 20 C 1.38703 * 120.06790 * 0.56861 * 19 18 17 21 21 C 1.38971 * 119.82257 * 359.61905 * 20 19 18 22 22 C 1.38195 * 119.94762 * 89.99580 * 17 16 14 23 23 O 1.36099 * 120.78437 * 180.26412 * 21 20 19 24 24 C 1.43177 * 116.71907 * 342.82007 * 23 21 20 25 25 C 1.53468 * 108.25133 * 46.15967 * 24 23 21 26 26 O 1.36110 * 119.39346 * 179.53374 * 20 19 18 27 27 H 0.96993 * 120.00015 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46844 * 59.99958 * 10 9 7 29 29 H 1.08996 * 109.47097 * 299.99829 * 10 9 7 30 30 H 1.08997 * 109.46515 * 59.99852 * 11 10 9 31 31 H 1.09002 * 109.46973 * 300.00846 * 11 10 9 32 32 H 1.08998 * 109.47242 * 60.00031 * 12 11 10 33 33 H 1.09004 * 109.46797 * 299.99847 * 12 11 10 34 34 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 35 35 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 36 36 H 1.07994 * 119.94190 * 0.03367 * 18 17 16 37 37 H 1.08000 * 119.96462 * 180.29556 * 19 18 17 38 38 H 1.07996 * 119.96290 * 359.97438 * 22 17 16 39 39 H 1.09003 * 109.71125 * 165.85177 * 24 23 21 40 40 H 1.09003 * 109.70550 * 286.46884 * 24 23 21 41 41 H 1.08997 * 109.71075 * 59.94570 * 25 24 23 42 42 H 1.08999 * 109.71242 * 180.58122 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5958 -3.2363 -0.0002 12 6 5.8615 -4.7430 -0.0011 13 8 7.2938 -4.9818 -0.0006 14 6 7.6981 -6.2618 -0.0018 15 8 6.8822 -7.1531 -0.0028 16 6 9.1694 -6.5873 0.0048 17 6 9.3531 -8.0830 0.0088 18 6 9.4382 -8.7646 1.2088 19 6 9.6019 -10.1368 1.2165 20 6 9.6932 -10.8325 0.0201 21 6 9.6116 -10.1469 -1.1860 22 6 9.4420 -8.7703 -1.1867 23 8 9.6934 -10.8106 -2.3714 24 6 10.2344 -12.1356 -2.3313 25 6 9.5754 -12.8889 -1.1679 26 8 9.8639 -12.1826 0.0438 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8904 29 1 3.6435 -3.4317 0.8896 30 1 6.0387 -2.7893 0.8898 31 1 6.0387 -2.7890 -0.8901 32 1 5.4186 -5.1895 -0.8914 33 1 5.4186 -5.1905 0.8886 34 1 9.6387 -6.1660 -0.8842 35 1 9.6317 -6.1620 0.8957 36 1 9.3723 -8.2242 2.1415 37 1 9.6632 -10.6674 2.1552 38 1 9.3792 -8.2351 -2.1226 39 1 10.0209 -12.6485 -3.2692 40 1 11.3121 -12.0881 -2.1749 41 1 8.4970 -12.9308 -1.3210 42 1 9.9785 -13.8998 -1.1091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805365036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:01 Heat of formation + Delta-G solvation = -147.863869 kcal Electronic energy + Delta-G solvation = -25032.045976 eV Core-core repulsion = 21068.777268 eV Total energy + Delta-G solvation = -3963.268708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66470 -40.55675 -38.42262 -37.64955 -36.65733 -33.66426 -32.95168 -32.45838 -31.31655 -29.97099 -27.89319 -26.40027 -25.59831 -24.88391 -23.18877 -21.77436 -21.37510 -20.55775 -18.98217 -17.86219 -17.70398 -17.64638 -17.34815 -16.72134 -16.40091 -15.84227 -15.49654 -15.05148 -15.01088 -14.81541 -14.76761 -14.42740 -14.33250 -14.23383 -13.44483 -13.11551 -13.10020 -12.84114 -12.55117 -12.44325 -12.28653 -12.04691 -11.55933 -11.53002 -11.44522 -11.21012 -11.09605 -10.98158 -10.90793 -10.66854 -10.35321 -10.23960 -9.82854 -9.02801 -8.98567 -8.61873 -8.41447 -6.98515 -6.30211 -4.03645 0.81886 0.95978 2.11597 2.48345 2.59191 2.79349 3.00955 3.28817 3.37465 3.43698 3.57178 3.74794 4.20045 4.22586 4.29501 4.32211 4.42055 4.57596 4.67357 4.77281 4.82108 4.89154 4.95073 4.99067 5.04194 5.08815 5.10814 5.14808 5.17157 5.39259 5.50183 5.67524 5.68049 5.76114 5.78849 6.05019 6.10660 6.22162 6.33272 6.40246 6.46747 6.57676 7.00106 7.68127 7.93360 8.42710 9.15107 10.79180 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.001556 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.821107 B =17984.990213 C =18191.537692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.073 3.927 13 O -0.356 6.356 14 C 0.459 3.541 15 O -0.500 6.500 16 C -0.070 4.070 17 C -0.072 4.072 18 C -0.096 4.096 19 C -0.111 4.111 20 C 0.052 3.948 21 C 0.051 3.949 22 C -0.095 4.095 23 O -0.307 6.307 24 C 0.021 3.979 25 C 0.020 3.980 26 O -0.308 6.308 27 H 0.271 0.729 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.038 -24.205 -1.425 35.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.002 4.002 13 O -0.273 6.273 14 C 0.301 3.699 15 O -0.387 6.387 16 C -0.107 4.107 17 C -0.073 4.073 18 C -0.114 4.114 19 C -0.130 4.130 20 C 0.007 3.993 21 C 0.006 3.994 22 C -0.114 4.114 23 O -0.221 6.221 24 C -0.055 4.055 25 C -0.056 4.056 26 O -0.223 6.223 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 26.292 -23.521 -1.459 35.308 hybrid contribution -1.017 -0.569 -0.200 1.182 sum 25.275 -24.091 -1.659 34.956 Atomic orbital electron populations 1.69938 1.05918 1.27757 1.48076 1.24793 0.94519 0.99022 0.93287 0.86669 0.81730 0.83193 0.79735 1.19329 1.20041 1.16149 1.22128 0.86985 0.97522 1.58642 0.89307 1.84153 1.11800 1.04331 1.97557 1.22951 0.96054 1.00057 1.04230 1.21326 0.95882 0.92332 1.04391 1.23219 0.76278 0.97915 1.02808 1.86463 1.28745 1.28471 1.83660 1.23503 0.92313 0.81043 0.73071 1.90710 1.55577 1.47915 1.44512 1.20247 0.90270 0.93087 1.07129 1.18972 1.01787 0.93775 0.92740 1.20790 0.99678 0.93172 0.97775 1.20386 1.02822 0.93775 0.96015 1.18914 1.03771 0.83012 0.93562 1.18765 1.04439 0.92104 0.84074 1.20237 1.02049 0.90345 0.98730 1.86326 1.79822 1.28416 1.27571 1.23635 0.98578 0.82177 1.01097 1.23650 1.01596 0.96610 0.83750 1.86310 1.84132 1.16060 1.35750 0.91927 0.91030 0.90976 0.90242 0.90268 0.91032 0.91016 0.86488 0.86307 0.84819 0.84550 0.84686 0.85988 0.90443 0.90326 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 2 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 3 Si 0.86 21.37 27.74 -169.99 -4.71 16.66 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 7 C -0.51 -14.61 10.04 30.94 0.31 -14.30 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.21 -4.96 19.41 -107.50 -2.09 -7.05 16 10 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 11 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 12 C 0.07 1.00 5.47 37.15 0.20 1.20 16 13 O -0.36 -4.53 10.22 -39.26 -0.40 -4.93 16 14 C 0.46 5.46 7.95 36.00 0.29 5.74 16 15 O -0.50 -7.63 15.78 -18.76 -0.30 -7.93 16 16 C -0.07 -0.54 5.94 -29.04 -0.17 -0.71 16 17 C -0.07 -0.67 4.37 -104.63 -0.46 -1.12 16 18 C -0.10 -0.84 9.69 -39.59 -0.38 -1.22 16 19 C -0.11 -1.02 9.96 -39.43 -0.39 -1.42 16 20 C 0.05 0.54 6.49 -39.14 -0.25 0.28 16 21 C 0.05 0.54 6.49 -39.14 -0.25 0.28 16 22 C -0.10 -0.95 9.61 -39.43 -0.38 -1.33 16 23 O -0.31 -2.97 10.42 -32.84 -0.34 -3.31 16 24 C 0.02 0.12 7.26 37.40 0.27 0.39 16 25 C 0.02 0.11 7.26 37.40 0.27 0.38 16 26 O -0.31 -2.83 10.42 -32.88 -0.34 -3.18 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.07 1.36 8.14 -51.91 -0.42 0.94 16 29 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.12 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.12 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -35.25 374.31 -8.66 -43.91 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.91 Total: -1.64 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.99 Total: -12.31 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.78 Total: -25.87 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.38 Total: -19.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.09 Total: -7.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.25 -8.66 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805365036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.953 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds