Wall clock time and date at job start Tue Mar 31 2020 20:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.46996 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.47188 * 29.99937 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99843 * 3 2 1 7 7 C 1.38800 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99944 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00033 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47236 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38262 * 119.94179 * 269.72262 * 17 16 14 19 19 C 1.38194 * 120.10924 * 179.77318 * 18 17 16 20 20 C 1.38703 * 120.06790 * 0.56861 * 19 18 17 21 21 C 1.38971 * 119.82257 * 359.61905 * 20 19 18 22 22 C 1.38195 * 119.94762 * 89.99580 * 17 16 14 23 23 O 1.36099 * 120.78437 * 180.26412 * 21 20 19 24 24 C 1.43177 * 116.71907 * 342.82007 * 23 21 20 25 25 C 1.53468 * 108.25133 * 46.15967 * 24 23 21 26 26 O 1.36110 * 119.39346 * 179.53374 * 20 19 18 27 27 H 0.96993 * 120.00015 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46844 * 59.99958 * 10 9 7 29 29 H 1.08996 * 109.47097 * 299.99829 * 10 9 7 30 30 H 1.08997 * 109.46515 * 59.99852 * 11 10 9 31 31 H 1.09002 * 109.46973 * 300.00846 * 11 10 9 32 32 H 1.08998 * 109.47242 * 60.00031 * 12 11 10 33 33 H 1.09004 * 109.46797 * 299.99847 * 12 11 10 34 34 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 35 35 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 36 36 H 1.07994 * 119.94190 * 0.03367 * 18 17 16 37 37 H 1.08000 * 119.96462 * 180.29556 * 19 18 17 38 38 H 1.07996 * 119.96290 * 359.97438 * 22 17 16 39 39 H 1.09003 * 109.71125 * 165.85177 * 24 23 21 40 40 H 1.09003 * 109.70550 * 286.46884 * 24 23 21 41 41 H 1.08997 * 109.71075 * 59.94570 * 25 24 23 42 42 H 1.08999 * 109.71242 * 180.58122 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5958 -3.2363 -0.0002 12 6 5.8615 -4.7430 -0.0011 13 8 7.2938 -4.9818 -0.0006 14 6 7.6981 -6.2618 -0.0018 15 8 6.8822 -7.1531 -0.0028 16 6 9.1694 -6.5873 0.0048 17 6 9.3531 -8.0830 0.0088 18 6 9.4382 -8.7646 1.2088 19 6 9.6019 -10.1368 1.2165 20 6 9.6932 -10.8325 0.0201 21 6 9.6116 -10.1469 -1.1860 22 6 9.4420 -8.7703 -1.1867 23 8 9.6934 -10.8106 -2.3714 24 6 10.2344 -12.1356 -2.3313 25 6 9.5754 -12.8889 -1.1679 26 8 9.8639 -12.1826 0.0438 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8904 29 1 3.6435 -3.4317 0.8896 30 1 6.0387 -2.7893 0.8898 31 1 6.0387 -2.7890 -0.8901 32 1 5.4186 -5.1895 -0.8914 33 1 5.4186 -5.1905 0.8886 34 1 9.6387 -6.1660 -0.8842 35 1 9.6317 -6.1620 0.8957 36 1 9.3723 -8.2242 2.1415 37 1 9.6632 -10.6674 2.1552 38 1 9.3792 -8.2351 -2.1226 39 1 10.0209 -12.6485 -3.2692 40 1 11.3121 -12.0881 -2.1749 41 1 8.4970 -12.9308 -1.3210 42 1 9.9785 -13.8998 -1.1091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805365036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:00 Heat of formation + Delta-G solvation = -168.802489 kcal Electronic energy + Delta-G solvation = -25032.953943 eV Core-core repulsion = 21068.777268 eV Total energy + Delta-G solvation = -3964.176675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28416 -41.50586 -39.10368 -38.27169 -37.67819 -34.93244 -34.68312 -33.63246 -31.90658 -30.57699 -28.74078 -28.01882 -27.28440 -25.48880 -23.89123 -22.86929 -22.36814 -21.24370 -19.66726 -19.58335 -18.68670 -18.32993 -18.24850 -17.71610 -17.37062 -17.09829 -16.44195 -16.21197 -16.05935 -15.95604 -15.41912 -15.37209 -15.13463 -14.94352 -14.89252 -14.42096 -14.21103 -14.03011 -13.78986 -13.34480 -13.15218 -13.03389 -13.00325 -12.63318 -12.59716 -12.36377 -12.25076 -12.09014 -12.01699 -11.79744 -11.51205 -11.49140 -11.44336 -11.16427 -10.60564 -9.65746 -9.08649 -9.00455 -8.51995 -6.24312 0.12428 0.28168 1.07785 1.20848 1.33573 1.46759 1.55419 1.87823 2.02796 2.25135 2.27011 2.64904 2.69410 2.86056 3.26201 3.55989 3.64001 3.81398 3.84399 3.90736 3.98444 4.04516 4.06442 4.14325 4.24874 4.29095 4.32450 4.46239 4.53346 4.55509 4.58860 4.64098 4.66566 4.88281 5.00611 5.04472 5.11094 5.13426 5.44356 5.47947 5.62763 5.69178 5.86952 6.10056 6.36913 6.73941 6.91445 8.61079 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.001556 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.821107 B =17984.990213 C =18191.537692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.226 1.226 7 C -0.528 4.528 8 H 0.050 0.950 9 S -0.204 6.204 10 C -0.075 4.075 11 C -0.087 4.087 12 C 0.078 3.922 13 O -0.354 6.354 14 C 0.460 3.540 15 O -0.539 6.539 16 C -0.062 4.062 17 C -0.080 4.080 18 C -0.100 4.100 19 C -0.123 4.123 20 C 0.037 3.963 21 C 0.033 3.967 22 C -0.111 4.111 23 O -0.327 6.327 24 C 0.015 3.985 25 C 0.013 3.987 26 O -0.323 6.323 27 H 0.277 0.723 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.151 0.849 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.689 -23.936 -1.262 37.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.149 1.149 7 C -0.676 4.676 8 H 0.068 0.932 9 S 0.024 5.976 10 C -0.224 4.224 11 C -0.125 4.125 12 C 0.003 3.997 13 O -0.270 6.270 14 C 0.304 3.696 15 O -0.428 6.428 16 C -0.098 4.098 17 C -0.080 4.080 18 C -0.118 4.118 19 C -0.141 4.141 20 C -0.008 4.008 21 C -0.011 4.011 22 C -0.129 4.129 23 O -0.242 6.242 24 C -0.060 4.060 25 C -0.061 4.061 26 O -0.238 6.238 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 28.959 -23.266 -1.298 37.170 hybrid contribution -1.842 -0.868 -0.282 2.055 sum 27.117 -24.134 -1.580 36.336 Atomic orbital electron populations 1.70044 1.07743 1.29174 1.49044 1.25812 0.95436 1.02889 0.92618 0.85693 0.80819 0.78410 0.80292 1.18531 1.18768 1.14914 1.22372 0.90229 0.96324 1.58632 0.93192 1.83770 1.07330 1.08886 1.97588 1.22988 0.99137 0.96159 1.04103 1.21145 0.92657 0.93556 1.05187 1.22969 0.77357 0.96638 1.02742 1.86461 1.27616 1.29239 1.83725 1.24345 0.93702 0.80050 0.71472 1.90707 1.56945 1.48730 1.46433 1.20410 0.87256 0.92268 1.09889 1.19188 1.01573 0.94674 0.92604 1.21119 0.98838 0.93172 0.98622 1.20688 1.02710 0.94329 0.96368 1.19160 1.04094 0.83654 0.93895 1.18990 1.04993 0.92618 0.84539 1.20485 1.02452 0.90549 0.99459 1.86281 1.80227 1.30187 1.27545 1.23954 0.98821 0.80697 1.02498 1.23948 1.01634 0.97804 0.82751 1.86278 1.84193 1.15730 1.37565 0.91374 0.91279 0.91133 0.89374 0.89511 0.91320 0.91078 0.83952 0.83089 0.82640 0.83260 0.84226 0.83141 0.89803 0.90869 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.83 13.97 21.65 0.30 -56.53 16 2 C 0.04 2.18 5.50 84.86 0.47 2.65 16 3 Si 0.93 43.62 27.74 68.60 1.90 45.52 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.23 -10.13 6.74 99.48 0.67 -9.46 16 7 C -0.53 -31.11 10.04 67.95 0.68 -30.42 16 8 H 0.05 3.21 8.03 -2.91 -0.02 3.19 16 9 S -0.20 -9.61 19.41 -56.49 -1.10 -10.71 16 10 C -0.08 -2.81 5.67 71.98 0.41 -2.40 16 11 C -0.09 -2.45 5.60 30.59 0.17 -2.28 16 12 C 0.08 2.03 5.47 71.98 0.39 2.42 16 13 O -0.35 -8.15 10.22 -51.41 -0.53 -8.67 16 14 C 0.46 10.05 7.95 71.23 0.57 10.62 16 15 O -0.54 -16.01 15.78 21.94 0.35 -15.67 16 16 C -0.06 -0.77 5.94 29.10 0.17 -0.60 16 17 C -0.08 -1.36 4.37 -19.87 -0.09 -1.44 16 18 C -0.10 -1.59 9.69 22.26 0.22 -1.38 16 19 C -0.12 -2.18 9.96 22.37 0.22 -1.96 16 20 C 0.04 0.75 6.49 22.56 0.15 0.90 16 21 C 0.03 0.71 6.49 22.56 0.15 0.85 16 22 C -0.11 -2.17 9.61 22.37 0.22 -1.96 16 23 O -0.33 -6.31 10.42 -82.45 -0.86 -7.17 16 24 C 0.01 0.15 7.26 72.14 0.52 0.68 16 25 C 0.01 0.14 7.26 72.14 0.52 0.66 16 26 O -0.32 -5.83 10.42 -82.57 -0.86 -6.69 16 27 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 30 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 33 H 0.07 1.86 8.13 -2.38 -0.02 1.84 16 34 H 0.14 1.11 8.08 -2.38 -0.02 1.09 16 35 H 0.15 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -77.88 374.31 4.97 -72.91 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.99 Total: 10.66 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.77 Total: -23.66 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.90 Total: -38.20 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.90 Total: 45.52 kcal Atomic # 16 Polarization: -9.61 SS G_CDS: -1.10 Total: -10.71 kcal Total: -77.88 4.97 -72.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805365036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.889 kcal (2) G-P(sol) polarization free energy of solvation -77.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds