Wall clock time and date at job start Tue Mar 31 2020 21:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.69535 * 2 1 4 4 O 1.43170 * 109.70315 * 239.42265 * 2 1 3 5 5 C 1.36110 * 116.71378 * 286.50720 * 4 2 1 6 6 C 1.38706 * 119.39774 * 162.88147 * 5 4 2 7 7 C 1.38198 * 120.06092 * 179.67022 * 6 5 4 8 8 C 1.38250 * 120.11780 * 359.97438 * 7 6 5 9 9 C 1.38196 * 120.11088 * 0.03983 * 8 7 6 10 10 C 1.38705 * 120.06622 * 0.03736 * 9 8 7 11 11 O 1.36111 * 119.39536 * 179.58709 * 10 9 8 12 12 C 1.43234 * 116.66237 * 162.66777 * 11 10 9 13 13 H 1.09005 * 109.78807 * 286.70992 * 12 11 10 14 14 C 1.50694 * 109.68187 * 166.05697 * 12 11 10 15 15 O 1.20825 * 120.00054 * 356.28636 * 14 12 11 16 16 O 1.34232 * 120.00028 * 176.28971 * 14 12 11 17 17 C 1.45204 * 116.99863 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.47173 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47033 * 179.97438 * 18 17 16 20 20 S 1.81004 * 109.47102 * 180.02562 * 19 18 17 21 21 C 1.76194 * 100.00111 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00064 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00438 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99440 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46932 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47133 * 120.00108 * 25 23 21 28 28 H 1.48499 * 109.47337 * 239.99976 * 25 23 21 29 29 H 1.08998 * 109.46610 * 180.58129 * 1 2 3 30 30 H 1.08993 * 109.46940 * 300.57684 * 1 2 3 31 31 H 1.08998 * 109.46801 * 60.58030 * 1 2 3 32 32 H 1.07995 * 119.96804 * 359.62935 * 6 5 4 33 33 H 1.07998 * 119.93709 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.94682 * 180.02562 * 8 7 6 35 35 H 1.08001 * 119.96995 * 180.02562 * 9 8 7 36 36 H 1.09005 * 109.47278 * 300.00478 * 17 16 14 37 37 H 1.09005 * 109.46776 * 59.99679 * 17 16 14 38 38 H 1.08995 * 109.47156 * 300.00562 * 18 17 16 39 39 H 1.09000 * 109.46843 * 60.00178 * 18 17 16 40 40 H 1.08995 * 109.47764 * 300.00380 * 19 18 17 41 41 H 1.09000 * 109.47005 * 60.00468 * 19 18 17 42 42 H 0.97004 * 119.99909 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 8 2.0128 -0.6857 -1.1604 5 6 1.8938 -2.0416 -1.1637 6 6 1.9999 -2.7315 -2.3623 7 6 1.8882 -4.1088 -2.3804 8 6 1.6709 -4.8028 -1.2046 9 6 1.5639 -4.1214 -0.0071 10 6 1.6736 -2.7389 0.0180 11 8 1.5576 -2.0809 1.2039 12 6 2.0486 -0.7360 1.2434 13 1 3.1386 -0.7408 1.2402 14 6 1.5464 -0.0486 2.4868 15 8 0.7855 -0.6230 3.2292 16 8 1.9442 1.2018 2.7697 17 6 1.4198 1.8016 3.9837 18 6 1.9813 3.2165 4.1371 19 6 1.4283 3.8487 5.4159 20 16 2.0920 5.5229 5.5971 21 6 1.3146 5.9987 7.1050 22 1 0.6557 5.3105 7.6134 23 6 1.5490 7.2581 7.6395 24 7 2.3526 8.0967 7.0200 25 14 0.7243 7.7628 9.2377 26 1 -0.1247 6.6484 9.7301 27 1 1.7620 8.0804 10.2514 28 1 -0.1204 8.9611 9.0019 29 1 -0.3632 -1.0276 0.0104 30 1 -0.3633 0.5227 0.8847 31 1 -0.3633 0.5048 -0.8951 32 1 2.1694 -2.1918 -3.2822 33 1 1.9707 -4.6440 -3.3149 34 1 1.5844 -5.8791 -1.2219 35 1 1.3946 -4.6658 0.9102 36 1 0.3322 1.8461 3.9265 37 1 1.7141 1.1990 4.8430 38 1 3.0688 3.1716 4.1944 39 1 1.6874 3.8192 3.2778 40 1 0.3408 3.8937 5.3582 41 1 1.7219 3.2462 6.2755 42 1 2.5168 8.9767 7.3937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805385099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:54 Heat of formation + Delta-G solvation = -138.879796 kcal Electronic energy + Delta-G solvation = -25860.033663 eV Core-core repulsion = 21897.154534 eV Total energy + Delta-G solvation = -3962.879129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13640 -40.54234 -38.22967 -37.83231 -36.77552 -33.78896 -33.01988 -32.48171 -31.14427 -29.67922 -28.52493 -26.48078 -25.47731 -24.50976 -23.31182 -22.29015 -21.45249 -20.34257 -19.31262 -18.17902 -17.87925 -17.50023 -17.20161 -16.76475 -16.60225 -15.82617 -15.52496 -15.09821 -14.85640 -14.76776 -14.61015 -14.47119 -14.29848 -14.00464 -13.49728 -13.10680 -12.91212 -12.83775 -12.68203 -12.40766 -12.20054 -12.09174 -11.78092 -11.53608 -11.45283 -11.26075 -11.08185 -11.06050 -10.92796 -10.72281 -10.55901 -10.43324 -9.68521 -9.12294 -9.08812 -8.51660 -8.40819 -6.61369 -6.28935 -4.00336 0.86113 0.87240 1.67224 1.74539 2.55075 2.99860 3.17926 3.19458 3.26994 3.30153 3.46888 3.57323 4.08937 4.11648 4.15764 4.25581 4.51410 4.58764 4.66069 4.79816 4.92252 4.97138 4.98146 5.03240 5.07875 5.15371 5.29547 5.30121 5.35495 5.40856 5.63658 5.67450 5.70588 5.74613 5.77176 6.01336 6.04685 6.18702 6.22681 6.35713 6.41218 6.57640 6.93483 7.38220 7.55591 8.31062 9.17779 10.79249 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.039691 B = 0.001722 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.287203 B =16260.577838 C =16630.886763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 H 0.148 0.852 4 O -0.293 6.293 5 C 0.050 3.950 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.110 4.110 10 C 0.052 3.948 11 O -0.281 6.281 12 C 0.066 3.934 13 H 0.125 0.875 14 C 0.473 3.527 15 O -0.477 6.477 16 O -0.348 6.348 17 C 0.074 3.926 18 C -0.098 4.098 19 C -0.115 4.115 20 S -0.122 6.122 21 C -0.519 4.519 22 H 0.074 0.926 23 C 0.071 3.929 24 N -0.869 5.869 25 Si 0.920 3.080 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -23.560 -19.619 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.007 3.993 3 H 0.165 0.835 4 O -0.208 6.208 5 C 0.005 3.995 6 C -0.131 4.131 7 C -0.133 4.133 8 C -0.134 4.134 9 C -0.128 4.128 10 C 0.008 3.992 11 O -0.195 6.195 12 C 0.007 3.993 13 H 0.142 0.858 14 C 0.312 3.688 15 O -0.362 6.362 16 O -0.265 6.265 17 C -0.001 4.001 18 C -0.136 4.136 19 C -0.264 4.264 20 S 0.106 5.894 21 C -0.667 4.667 22 H 0.092 0.908 23 C -0.138 4.138 24 N -0.504 5.504 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.077 -22.868 -19.967 30.358 hybrid contribution -1.399 -0.220 2.123 2.552 sum -1.476 -23.088 -17.844 29.217 Atomic orbital electron populations 1.22373 0.93163 1.04116 1.04252 1.23223 0.96168 0.97393 0.82534 0.83498 1.86444 1.78459 1.15531 1.40316 1.18955 1.03860 0.83181 0.93477 1.20480 1.02958 0.94087 0.95607 1.20963 1.00581 0.93050 0.98741 1.20942 1.00765 1.00207 0.91469 1.20487 1.02585 0.90030 0.99713 1.18945 1.04529 0.92354 0.83419 1.86347 1.78785 1.24267 1.30130 1.22372 1.00801 0.83075 0.93024 0.85798 1.22307 0.79241 0.81123 0.86087 1.90733 1.31786 1.65098 1.48603 1.86431 1.67150 1.27676 1.45232 1.23428 0.99098 0.94581 0.82988 1.21307 1.01967 0.91488 0.98859 1.23184 1.02767 1.02558 0.97893 1.84660 1.63442 1.07671 1.33644 1.22739 1.32776 1.03011 1.08193 0.90758 1.25022 0.95152 0.95416 0.98161 1.70026 1.34356 1.07379 1.38671 0.86089 0.79067 0.78583 0.81655 1.19576 1.20513 1.20519 0.91214 0.90441 0.89904 0.84595 0.84937 0.84891 0.84558 0.90747 0.90716 0.90145 0.90162 0.91660 0.91652 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.94 37.16 0.33 -1.33 16 2 C 0.06 0.58 3.51 -26.46 -0.09 0.48 16 3 H 0.15 1.06 8.14 -51.93 -0.42 0.63 16 4 O -0.29 -2.90 10.16 -32.88 -0.33 -3.23 16 5 C 0.05 0.49 6.07 -39.14 -0.24 0.26 16 6 C -0.11 -0.88 9.96 -39.42 -0.39 -1.27 16 7 C -0.12 -0.73 10.04 -39.59 -0.40 -1.13 16 8 C -0.12 -0.76 10.04 -39.59 -0.40 -1.16 16 9 C -0.11 -0.94 9.96 -39.42 -0.39 -1.34 16 10 C 0.05 0.55 5.85 -39.14 -0.23 0.32 16 11 O -0.28 -3.35 9.05 -47.09 -0.43 -3.77 16 12 C 0.07 0.68 3.26 -27.62 -0.09 0.59 16 13 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 14 C 0.47 5.91 6.10 36.00 0.22 6.13 16 15 O -0.48 -7.40 16.26 -25.43 -0.41 -7.82 16 16 O -0.35 -4.29 10.22 -39.26 -0.40 -4.69 16 17 C 0.07 0.98 5.47 37.16 0.20 1.18 16 18 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 19 C -0.12 -2.21 5.67 37.16 0.21 -2.00 16 20 S -0.12 -3.10 21.44 -107.50 -2.30 -5.40 16 21 C -0.52 -14.60 9.50 30.94 0.29 -14.30 16 22 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 23 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 24 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 25 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.07 0.72 6.87 -51.93 -0.36 0.36 16 30 H 0.08 0.74 7.29 -51.93 -0.38 0.36 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 37 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -32.94 372.45 -9.55 -42.49 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.78 Total: -1.33 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.22 Total: -13.30 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.73 Total: -24.80 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.57 Total: -19.51 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.30 Total: -5.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.94 -9.55 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.391 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds