Wall clock time and date at job start Tue Mar 31 2020 21:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.69535 * 2 1 4 4 O 1.43170 * 109.70315 * 239.42265 * 2 1 3 5 5 C 1.36110 * 116.71378 * 286.50720 * 4 2 1 6 6 C 1.38706 * 119.39774 * 162.88147 * 5 4 2 7 7 C 1.38198 * 120.06092 * 179.67022 * 6 5 4 8 8 C 1.38250 * 120.11780 * 359.97438 * 7 6 5 9 9 C 1.38196 * 120.11088 * 0.03983 * 8 7 6 10 10 C 1.38705 * 120.06622 * 0.03736 * 9 8 7 11 11 O 1.36111 * 119.39536 * 179.58709 * 10 9 8 12 12 C 1.43234 * 116.66237 * 162.66777 * 11 10 9 13 13 H 1.09005 * 109.78807 * 286.70992 * 12 11 10 14 14 C 1.50694 * 109.68187 * 166.05697 * 12 11 10 15 15 O 1.20825 * 120.00054 * 356.28636 * 14 12 11 16 16 O 1.34232 * 120.00028 * 176.28971 * 14 12 11 17 17 C 1.45204 * 116.99863 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.47173 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47033 * 179.97438 * 18 17 16 20 20 S 1.81004 * 109.47102 * 180.02562 * 19 18 17 21 21 C 1.76194 * 100.00111 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00064 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00438 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99440 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46932 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47133 * 120.00108 * 25 23 21 28 28 H 1.48499 * 109.47337 * 239.99976 * 25 23 21 29 29 H 1.08998 * 109.46610 * 180.58129 * 1 2 3 30 30 H 1.08993 * 109.46940 * 300.57684 * 1 2 3 31 31 H 1.08998 * 109.46801 * 60.58030 * 1 2 3 32 32 H 1.07995 * 119.96804 * 359.62935 * 6 5 4 33 33 H 1.07998 * 119.93709 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.94682 * 180.02562 * 8 7 6 35 35 H 1.08001 * 119.96995 * 180.02562 * 9 8 7 36 36 H 1.09005 * 109.47278 * 300.00478 * 17 16 14 37 37 H 1.09005 * 109.46776 * 59.99679 * 17 16 14 38 38 H 1.08995 * 109.47156 * 300.00562 * 18 17 16 39 39 H 1.09000 * 109.46843 * 60.00178 * 18 17 16 40 40 H 1.08995 * 109.47764 * 300.00380 * 19 18 17 41 41 H 1.09000 * 109.47005 * 60.00468 * 19 18 17 42 42 H 0.97004 * 119.99909 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 8 2.0128 -0.6857 -1.1604 5 6 1.8938 -2.0416 -1.1637 6 6 1.9999 -2.7315 -2.3623 7 6 1.8882 -4.1088 -2.3804 8 6 1.6709 -4.8028 -1.2046 9 6 1.5639 -4.1214 -0.0071 10 6 1.6736 -2.7389 0.0180 11 8 1.5576 -2.0809 1.2039 12 6 2.0486 -0.7360 1.2434 13 1 3.1386 -0.7408 1.2402 14 6 1.5464 -0.0486 2.4868 15 8 0.7855 -0.6230 3.2292 16 8 1.9442 1.2018 2.7697 17 6 1.4198 1.8016 3.9837 18 6 1.9813 3.2165 4.1371 19 6 1.4283 3.8487 5.4159 20 16 2.0920 5.5229 5.5971 21 6 1.3146 5.9987 7.1050 22 1 0.6557 5.3105 7.6134 23 6 1.5490 7.2581 7.6395 24 7 2.3526 8.0967 7.0200 25 14 0.7243 7.7628 9.2377 26 1 -0.1247 6.6484 9.7301 27 1 1.7620 8.0804 10.2514 28 1 -0.1204 8.9611 9.0019 29 1 -0.3632 -1.0276 0.0104 30 1 -0.3633 0.5227 0.8847 31 1 -0.3633 0.5048 -0.8951 32 1 2.1694 -2.1918 -3.2822 33 1 1.9707 -4.6440 -3.3149 34 1 1.5844 -5.8791 -1.2219 35 1 1.3946 -4.6658 0.9102 36 1 0.3322 1.8461 3.9265 37 1 1.7141 1.1990 4.8430 38 1 3.0688 3.1716 4.1944 39 1 1.6874 3.8192 3.2778 40 1 0.3408 3.8937 5.3582 41 1 1.7219 3.2462 6.2755 42 1 2.5168 8.9767 7.3937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805385099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:53 Heat of formation + Delta-G solvation = -156.355806 kcal Electronic energy + Delta-G solvation = -25860.791479 eV Core-core repulsion = 21897.154534 eV Total energy + Delta-G solvation = -3963.636946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.89205 -41.51584 -38.86773 -38.60040 -37.81833 -35.04184 -34.60107 -33.81341 -31.75160 -30.31699 -29.39943 -28.02852 -27.27033 -25.20443 -23.95794 -23.24968 -22.69541 -21.08596 -20.04862 -19.61010 -19.01288 -18.62411 -18.17775 -17.71450 -17.39335 -16.90809 -16.61957 -16.40702 -16.02066 -15.86704 -15.58059 -15.43280 -15.12127 -14.92725 -14.70899 -14.28223 -14.12724 -13.85007 -13.71663 -13.41914 -13.18472 -12.99425 -12.97761 -12.74878 -12.65270 -12.48284 -12.44056 -12.39038 -12.19394 -11.91375 -11.61037 -11.54852 -11.38216 -11.16876 -10.36578 -9.69251 -9.16442 -8.68400 -8.39349 -6.15402 0.25468 0.28018 0.72766 0.76742 1.31790 1.37834 1.48825 1.69812 1.86871 2.24402 2.29828 2.71286 2.82797 2.95509 3.18912 3.33371 3.40346 3.46775 3.80594 3.83740 3.90135 3.94963 4.10694 4.11302 4.20866 4.29560 4.38729 4.39821 4.44151 4.50004 4.62801 4.66525 4.82001 4.91479 4.99633 4.99793 5.13718 5.20024 5.25410 5.39562 5.50605 5.65726 5.74982 6.16992 6.26312 6.37352 7.03704 8.70112 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.039691 B = 0.001722 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.287203 B =16260.577838 C =16630.886763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.066 3.934 3 H 0.167 0.833 4 O -0.298 6.298 5 C 0.031 3.969 6 C -0.119 4.119 7 C -0.108 4.108 8 C -0.110 4.110 9 C -0.124 4.124 10 C 0.027 3.973 11 O -0.304 6.304 12 C 0.066 3.934 13 H 0.142 0.858 14 C 0.480 3.520 15 O -0.510 6.510 16 O -0.341 6.341 17 C 0.080 3.920 18 C -0.086 4.086 19 C -0.094 4.094 20 S -0.182 6.182 21 C -0.541 4.541 22 H 0.074 0.926 23 C 0.017 3.983 24 N -0.906 5.906 25 Si 0.993 3.007 26 H -0.264 1.264 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -24.961 -20.631 32.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.009 3.991 3 H 0.184 0.816 4 O -0.213 6.213 5 C -0.014 4.014 6 C -0.138 4.138 7 C -0.126 4.126 8 C -0.128 4.128 9 C -0.143 4.143 10 C -0.017 4.017 11 O -0.219 6.219 12 C 0.008 3.992 13 H 0.159 0.841 14 C 0.321 3.679 15 O -0.398 6.398 16 O -0.258 6.258 17 C 0.005 3.995 18 C -0.124 4.124 19 C -0.243 4.243 20 S 0.047 5.953 21 C -0.689 4.689 22 H 0.092 0.908 23 C -0.188 4.188 24 N -0.542 5.542 25 Si 0.815 3.185 26 H -0.188 1.188 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.180 0.820 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.352 -24.277 -21.001 32.101 hybrid contribution -1.302 0.066 2.323 2.664 sum -1.654 -24.210 -18.677 30.622 Atomic orbital electron populations 1.22336 0.93470 1.03137 1.04581 1.23319 0.95955 0.97986 0.81824 0.81585 1.86427 1.78700 1.15827 1.40337 1.19219 1.04961 0.83178 0.94034 1.20820 1.02514 0.94960 0.95463 1.21386 0.98687 0.92566 0.99954 1.21326 0.99173 1.01636 0.90688 1.20756 1.02984 0.89639 1.00896 1.19236 1.06251 0.93066 0.83180 1.86292 1.79431 1.24836 1.31346 1.22480 1.01579 0.82870 0.92270 0.84117 1.22712 0.78282 0.80619 0.86242 1.90719 1.33410 1.65747 1.49888 1.86416 1.66910 1.27795 1.44636 1.23201 0.99265 0.93421 0.83594 1.21118 1.01927 0.92454 0.96919 1.23076 1.02725 0.98370 1.00079 1.84611 1.64591 1.12872 1.33249 1.23098 1.33054 1.03597 1.09153 0.90810 1.26037 0.95632 0.95301 1.01863 1.70148 1.35673 1.07889 1.40507 0.84978 0.78137 0.78373 0.76963 1.18772 1.19702 1.19677 0.92802 0.91109 0.88500 0.83146 0.81745 0.82039 0.84357 0.90191 0.90493 0.89957 0.89685 0.91224 0.91366 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.94 71.98 0.64 -2.55 16 2 C 0.07 1.14 3.51 30.77 0.11 1.25 16 3 H 0.17 2.14 8.14 -2.39 -0.02 2.12 16 4 O -0.30 -5.64 10.16 -82.56 -0.84 -6.48 16 5 C 0.03 0.58 6.07 22.56 0.14 0.72 16 6 C -0.12 -1.65 9.96 22.37 0.22 -1.43 16 7 C -0.11 -1.07 10.04 22.26 0.22 -0.84 16 8 C -0.11 -1.20 10.04 22.26 0.22 -0.98 16 9 C -0.12 -2.06 9.96 22.37 0.22 -1.84 16 10 C 0.03 0.56 5.85 22.56 0.13 0.69 16 11 O -0.30 -7.37 9.05 -68.99 -0.62 -7.99 16 12 C 0.07 1.35 3.26 30.02 0.10 1.45 16 13 H 0.14 2.32 8.14 -2.38 -0.02 2.30 16 14 C 0.48 11.81 6.10 71.23 0.43 12.24 16 15 O -0.51 -15.93 16.26 28.35 0.46 -15.47 16 16 O -0.34 -8.04 10.22 -51.43 -0.53 -8.56 16 17 C 0.08 2.03 5.47 71.98 0.39 2.43 16 18 C -0.09 -2.51 5.60 30.59 0.17 -2.34 16 19 C -0.09 -3.53 5.67 71.98 0.41 -3.13 16 20 S -0.18 -9.34 21.44 -56.49 -1.21 -10.55 16 21 C -0.54 -30.69 9.50 67.95 0.65 -30.04 16 22 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 23 C 0.02 0.94 5.49 84.86 0.47 1.41 16 24 N -0.91 -53.80 13.22 21.65 0.29 -53.51 16 25 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 26 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H 0.05 1.13 6.87 -2.39 -0.02 1.12 16 30 H 0.07 1.34 7.29 -2.39 -0.02 1.33 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 34 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.08 1.97 8.13 -2.38 -0.02 1.96 16 37 H 0.08 1.95 8.13 -2.38 -0.02 1.93 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 41 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -71.98 372.45 5.13 -66.85 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.02 Total: 13.21 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.53 Total: -22.97 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.29 Total: -53.51 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.53 Total: -38.50 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.21 Total: -10.55 kcal Total: -71.98 5.13 -66.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.502 kcal (2) G-P(sol) polarization free energy of solvation -71.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds