Wall clock time and date at job start Tue Mar 31 2020 21:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70598 * 2 1 4 4 O 1.43172 * 109.74243 * 120.60680 * 2 1 3 5 5 C 1.36111 * 116.71151 * 165.91177 * 4 2 1 6 6 C 1.38702 * 119.39823 * 162.89356 * 5 4 2 7 7 C 1.38188 * 120.06835 * 179.67587 * 6 5 4 8 8 C 1.38257 * 120.11272 * 0.03340 * 7 6 5 9 9 C 1.38193 * 120.11306 * 0.06843 * 8 7 6 10 10 C 1.38709 * 120.06617 * 359.97438 * 9 8 7 11 11 O 1.36109 * 119.39926 * 179.85076 * 10 9 8 12 12 C 1.43177 * 116.70549 * 162.74321 * 11 10 9 13 13 H 1.09000 * 109.70899 * 286.54955 * 12 11 10 14 14 C 1.50700 * 109.74508 * 165.93620 * 12 11 10 15 15 O 1.20827 * 119.99746 * 356.19578 * 14 12 11 16 16 O 1.34232 * 119.99691 * 176.19532 * 14 12 11 17 17 C 1.45203 * 116.99461 * 180.02562 * 16 14 12 18 18 C 1.52997 * 109.46694 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47017 * 180.02562 * 18 17 16 20 20 S 1.81001 * 109.47232 * 180.02562 * 19 18 17 21 21 C 1.76200 * 100.00196 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99591 * 0.02562 * 21 20 19 23 23 C 1.38793 * 119.99889 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00481 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99876 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46864 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47071 * 120.00095 * 25 23 21 28 28 H 1.48506 * 109.47150 * 240.00335 * 25 23 21 29 29 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47645 * 300.00013 * 1 2 3 31 31 H 1.09006 * 109.47106 * 60.00380 * 1 2 3 32 32 H 1.08006 * 119.96489 * 359.67586 * 6 5 4 33 33 H 1.07998 * 119.94709 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.94496 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.96736 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47334 * 299.99694 * 17 16 14 37 37 H 1.09002 * 109.46976 * 60.00040 * 17 16 14 38 38 H 1.09000 * 109.47481 * 299.99690 * 18 17 16 39 39 H 1.08999 * 109.47603 * 59.99838 * 18 17 16 40 40 H 1.09000 * 109.47115 * 299.99788 * 19 18 17 41 41 H 1.09001 * 109.47320 * 60.00226 * 19 18 17 42 42 H 0.96993 * 120.00354 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 8 2.0136 -0.6861 1.1598 5 6 3.3303 -1.0312 1.1619 6 6 3.9449 -1.3645 2.3598 7 6 5.2792 -1.7234 2.3770 8 6 6.0054 -1.7508 1.2009 9 6 5.3997 -1.4179 0.0042 10 6 4.0609 -1.0558 -0.0200 11 8 3.4788 -0.7275 -1.2057 12 6 2.0476 -0.7353 -1.2438 13 1 1.6853 -1.7633 -1.2405 14 6 1.5676 -0.0312 -2.4868 15 8 2.3635 0.4923 -3.2300 16 8 0.2558 0.0142 -2.7682 17 6 -0.1341 0.7087 -3.9822 18 6 -1.6557 0.6554 -4.1338 19 6 -2.0666 1.3866 -5.4134 20 16 -3.8667 1.3242 -5.5924 21 6 -4.0553 2.2151 -7.1009 22 1 -3.1862 2.6038 -7.6106 23 6 -5.3207 2.4162 -7.6345 24 7 -6.3799 1.9419 -7.0134 25 14 -5.5207 3.3613 -9.2333 26 1 -4.1864 3.7869 -9.7269 27 1 -6.1687 2.4896 -10.2458 28 1 -6.3660 4.5594 -8.9978 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.3800 -1.3434 3.2802 33 1 5.7557 -1.9830 3.3108 34 1 7.0479 -2.0321 1.2174 35 1 5.9692 -1.4396 -0.9131 36 1 0.1896 1.7480 -3.9263 37 1 0.3334 0.2283 -4.8418 38 1 -1.9790 -0.3840 -4.1900 39 1 -2.1235 1.1354 -3.2744 40 1 -1.7433 2.4260 -5.3577 41 1 -1.5988 0.9061 -6.2727 42 1 -7.2643 2.0828 -7.3861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805385100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:58 Heat of formation + Delta-G solvation = -138.229811 kcal Electronic energy + Delta-G solvation = -25824.301927 eV Core-core repulsion = 21861.450983 eV Total energy + Delta-G solvation = -3962.850944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02524 -40.56376 -38.21019 -37.87243 -36.80163 -33.95974 -33.19574 -32.48459 -31.16265 -29.52053 -28.31109 -26.51488 -25.49277 -24.17038 -23.18014 -22.34829 -21.45028 -20.75310 -19.35008 -18.62670 -17.62092 -17.43802 -17.25889 -16.89168 -16.37679 -15.82850 -15.31224 -15.07202 -15.04393 -14.85695 -14.51888 -14.45154 -14.24856 -13.82537 -13.47702 -13.03145 -12.94593 -12.88098 -12.65260 -12.33277 -12.23494 -12.14688 -11.80295 -11.45465 -11.42390 -11.24661 -11.08503 -11.01059 -10.93047 -10.72311 -10.56386 -10.42069 -9.68746 -9.12539 -9.08761 -8.52596 -8.41196 -6.61607 -6.29170 -4.00607 0.85856 0.87217 1.66250 1.71762 2.51687 3.00687 3.17782 3.19454 3.26844 3.29809 3.47023 3.56949 4.09310 4.15349 4.18033 4.20893 4.47875 4.58870 4.74284 4.82265 4.94606 4.97547 4.98241 5.03061 5.07660 5.26351 5.29683 5.35667 5.37848 5.50055 5.67110 5.69748 5.72490 5.75884 5.88535 6.00685 6.04406 6.18172 6.21818 6.35230 6.43020 6.57128 6.93361 7.37275 7.55392 8.30861 9.17598 10.79003 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.039030 B = 0.001746 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.218340 B =16033.468197 C =16605.510688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 H 0.091 0.909 4 O -0.296 6.296 5 C 0.050 3.950 6 C -0.112 4.112 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.108 4.108 10 C 0.051 3.949 11 O -0.284 6.284 12 C 0.065 3.935 13 H 0.124 0.876 14 C 0.473 3.527 15 O -0.477 6.477 16 O -0.344 6.344 17 C 0.071 3.929 18 C -0.097 4.097 19 C -0.116 4.116 20 S -0.122 6.122 21 C -0.519 4.519 22 H 0.074 0.926 23 C 0.072 3.928 24 N -0.869 5.869 25 Si 0.920 3.080 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.513 -7.820 19.500 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 H 0.109 0.891 4 O -0.210 6.210 5 C 0.005 3.995 6 C -0.131 4.131 7 C -0.133 4.133 8 C -0.134 4.134 9 C -0.127 4.127 10 C 0.006 3.994 11 O -0.199 6.199 12 C 0.006 3.994 13 H 0.142 0.858 14 C 0.313 3.687 15 O -0.362 6.362 16 O -0.261 6.261 17 C -0.004 4.004 18 C -0.136 4.136 19 C -0.264 4.264 20 S 0.106 5.894 21 C -0.667 4.667 22 H 0.092 0.908 23 C -0.137 4.137 24 N -0.504 5.504 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.671 -8.103 19.848 29.781 hybrid contribution 0.771 1.233 -2.087 2.544 sum 21.443 -6.870 17.761 28.678 Atomic orbital electron populations 1.22025 0.88991 1.05035 1.05076 1.23062 0.98220 0.95399 0.82484 0.89070 1.86391 1.21366 1.73076 1.40210 1.18996 0.84433 1.02550 0.93523 1.20476 0.94773 1.02265 0.95595 1.20965 0.93136 1.00426 0.98753 1.20949 1.00319 1.00656 0.91465 1.20489 0.91713 1.00748 0.99752 1.18977 0.94017 1.03044 0.83359 1.86331 1.18120 1.85238 1.30188 1.22455 0.81643 1.02182 0.93078 0.85820 1.22296 0.81889 0.78468 0.86084 1.90734 1.55600 1.41277 1.48571 1.86475 1.24012 1.70840 1.44772 1.23446 0.97165 0.96604 0.83158 1.21309 0.90649 1.02777 0.98844 1.23188 1.03653 1.01685 0.97906 1.84653 0.96911 1.74237 1.33613 1.22737 0.95617 1.40219 1.08137 0.90759 1.25018 0.94890 0.95671 0.98155 1.70019 0.98426 1.43332 1.38662 0.86094 0.78396 0.79261 0.81670 1.19577 1.20514 1.20517 0.90467 0.90217 0.87880 0.84560 0.84888 0.84843 0.84514 0.90710 0.90711 0.90138 0.90164 0.91664 0.91662 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.08 37.16 0.34 -0.90 16 2 C 0.07 0.62 3.16 -26.48 -0.08 0.54 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.30 -3.05 10.07 -32.88 -0.33 -3.38 16 5 C 0.05 0.51 6.49 -39.14 -0.25 0.26 16 6 C -0.11 -0.90 9.96 -39.43 -0.39 -1.30 16 7 C -0.11 -0.74 10.04 -39.59 -0.40 -1.14 16 8 C -0.12 -0.78 10.04 -39.59 -0.40 -1.18 16 9 C -0.11 -0.96 9.96 -39.42 -0.39 -1.35 16 10 C 0.05 0.55 6.49 -39.14 -0.25 0.30 16 11 O -0.28 -3.53 9.62 -47.07 -0.45 -3.98 16 12 C 0.06 0.69 3.10 -27.63 -0.09 0.61 16 13 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.47 5.94 7.17 36.01 0.26 6.20 16 15 O -0.48 -7.52 16.27 -25.42 -0.41 -7.94 16 16 O -0.34 -4.09 7.55 -39.26 -0.30 -4.38 16 17 C 0.07 0.92 5.47 37.16 0.20 1.12 16 18 C -0.10 -1.44 5.60 -26.73 -0.15 -1.59 16 19 C -0.12 -2.19 5.67 37.16 0.21 -1.98 16 20 S -0.12 -3.07 21.44 -107.50 -2.30 -5.38 16 21 C -0.52 -14.54 9.50 30.94 0.29 -14.25 16 22 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 23 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 24 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 25 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.88 5.66 -51.93 -0.29 0.59 16 32 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 37 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 41 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -32.86 371.69 -9.44 -42.31 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.76 Total: -1.55 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.20 Total: -12.75 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.73 Total: -24.73 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -1.49 Total: -19.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.30 Total: -5.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.86 -9.44 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.924 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds