Wall clock time and date at job start Tue Mar 31 2020 21:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70598 * 2 1 4 4 O 1.43172 * 109.74243 * 120.60680 * 2 1 3 5 5 C 1.36111 * 116.71151 * 165.91177 * 4 2 1 6 6 C 1.38702 * 119.39823 * 162.89356 * 5 4 2 7 7 C 1.38188 * 120.06835 * 179.67587 * 6 5 4 8 8 C 1.38257 * 120.11272 * 0.03340 * 7 6 5 9 9 C 1.38193 * 120.11306 * 0.06843 * 8 7 6 10 10 C 1.38709 * 120.06617 * 359.97438 * 9 8 7 11 11 O 1.36109 * 119.39926 * 179.85076 * 10 9 8 12 12 C 1.43177 * 116.70549 * 162.74321 * 11 10 9 13 13 H 1.09000 * 109.70899 * 286.54955 * 12 11 10 14 14 C 1.50700 * 109.74508 * 165.93620 * 12 11 10 15 15 O 1.20827 * 119.99746 * 356.19578 * 14 12 11 16 16 O 1.34232 * 119.99691 * 176.19532 * 14 12 11 17 17 C 1.45203 * 116.99461 * 180.02562 * 16 14 12 18 18 C 1.52997 * 109.46694 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47017 * 180.02562 * 18 17 16 20 20 S 1.81001 * 109.47232 * 180.02562 * 19 18 17 21 21 C 1.76200 * 100.00196 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99591 * 0.02562 * 21 20 19 23 23 C 1.38793 * 119.99889 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00481 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99876 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46864 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47071 * 120.00095 * 25 23 21 28 28 H 1.48506 * 109.47150 * 240.00335 * 25 23 21 29 29 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47645 * 300.00013 * 1 2 3 31 31 H 1.09006 * 109.47106 * 60.00380 * 1 2 3 32 32 H 1.08006 * 119.96489 * 359.67586 * 6 5 4 33 33 H 1.07998 * 119.94709 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.94496 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.96736 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47334 * 299.99694 * 17 16 14 37 37 H 1.09002 * 109.46976 * 60.00040 * 17 16 14 38 38 H 1.09000 * 109.47481 * 299.99690 * 18 17 16 39 39 H 1.08999 * 109.47603 * 59.99838 * 18 17 16 40 40 H 1.09000 * 109.47115 * 299.99788 * 19 18 17 41 41 H 1.09001 * 109.47320 * 60.00226 * 19 18 17 42 42 H 0.96993 * 120.00354 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 8 2.0136 -0.6861 1.1598 5 6 3.3303 -1.0312 1.1619 6 6 3.9449 -1.3645 2.3598 7 6 5.2792 -1.7234 2.3770 8 6 6.0054 -1.7508 1.2009 9 6 5.3997 -1.4179 0.0042 10 6 4.0609 -1.0558 -0.0200 11 8 3.4788 -0.7275 -1.2057 12 6 2.0476 -0.7353 -1.2438 13 1 1.6853 -1.7633 -1.2405 14 6 1.5676 -0.0312 -2.4868 15 8 2.3635 0.4923 -3.2300 16 8 0.2558 0.0142 -2.7682 17 6 -0.1341 0.7087 -3.9822 18 6 -1.6557 0.6554 -4.1338 19 6 -2.0666 1.3866 -5.4134 20 16 -3.8667 1.3242 -5.5924 21 6 -4.0553 2.2151 -7.1009 22 1 -3.1862 2.6038 -7.6106 23 6 -5.3207 2.4162 -7.6345 24 7 -6.3799 1.9419 -7.0134 25 14 -5.5207 3.3613 -9.2333 26 1 -4.1864 3.7869 -9.7269 27 1 -6.1687 2.4896 -10.2458 28 1 -6.3660 4.5594 -8.9978 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.3800 -1.3434 3.2802 33 1 5.7557 -1.9830 3.3108 34 1 7.0479 -2.0321 1.2174 35 1 5.9692 -1.4396 -0.9131 36 1 0.1896 1.7480 -3.9263 37 1 0.3334 0.2283 -4.8418 38 1 -1.9790 -0.3840 -4.1900 39 1 -2.1235 1.1354 -3.2744 40 1 -1.7433 2.4260 -5.3577 41 1 -1.5988 0.9061 -6.2727 42 1 -7.2643 2.0828 -7.3861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805385100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:57 Heat of formation + Delta-G solvation = -155.556368 kcal Electronic energy + Delta-G solvation = -25825.053263 eV Core-core repulsion = 21861.450983 eV Total energy + Delta-G solvation = -3963.602280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.81676 -41.53390 -38.86369 -38.67841 -37.85249 -35.10714 -34.60475 -34.07694 -31.79206 -30.16083 -29.19343 -28.02433 -27.29179 -24.88623 -23.84452 -23.28182 -22.67254 -21.55478 -20.11093 -19.68849 -19.35347 -18.30280 -18.27663 -17.85487 -17.18979 -16.90502 -16.65825 -16.25921 -16.03988 -15.87920 -15.66165 -15.51780 -15.04852 -14.87782 -14.58018 -14.26846 -14.09230 -13.85439 -13.59921 -13.41482 -13.18486 -12.98399 -12.91471 -12.86515 -12.61022 -12.46965 -12.40957 -12.38613 -12.10189 -11.92257 -11.56416 -11.55161 -11.39287 -11.16563 -10.35834 -9.71331 -9.20235 -8.67539 -8.39022 -6.14829 0.22841 0.25888 0.70260 0.72990 1.31959 1.37884 1.48877 1.70137 1.80804 2.24217 2.29157 2.68876 2.79848 2.95809 3.15956 3.32604 3.41440 3.45052 3.78212 3.83085 3.91251 3.99349 4.09361 4.12272 4.24315 4.30706 4.37958 4.43531 4.47924 4.63911 4.67748 4.76015 4.88794 4.98388 5.01271 5.10131 5.18302 5.24009 5.25913 5.39938 5.48599 5.63381 5.74120 6.17336 6.23526 6.35470 7.04129 8.70379 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.039030 B = 0.001746 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.218340 B =16033.468197 C =16605.510688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 H 0.085 0.915 4 O -0.302 6.302 5 C 0.028 3.972 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.109 4.109 9 C -0.122 4.122 10 C 0.022 3.978 11 O -0.309 6.309 12 C 0.066 3.934 13 H 0.140 0.860 14 C 0.480 3.520 15 O -0.512 6.512 16 O -0.333 6.333 17 C 0.077 3.923 18 C -0.085 4.085 19 C -0.094 4.094 20 S -0.181 6.181 21 C -0.541 4.541 22 H 0.073 0.927 23 C 0.017 3.983 24 N -0.906 5.906 25 Si 0.992 3.008 26 H -0.264 1.264 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.029 -8.108 20.545 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 H 0.103 0.897 4 O -0.217 6.217 5 C -0.017 4.017 6 C -0.137 4.137 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.141 4.141 10 C -0.022 4.022 11 O -0.224 6.224 12 C 0.008 3.992 13 H 0.157 0.843 14 C 0.322 3.678 15 O -0.399 6.399 16 O -0.250 6.250 17 C 0.003 3.997 18 C -0.123 4.123 19 C -0.243 4.243 20 S 0.048 5.952 21 C -0.689 4.689 22 H 0.092 0.908 23 C -0.188 4.188 24 N -0.542 5.542 25 Si 0.815 3.185 26 H -0.188 1.188 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.169 0.831 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.188 -8.403 20.915 31.629 hybrid contribution 0.441 1.261 -2.288 2.650 sum 22.629 -7.142 18.627 30.167 Atomic orbital electron populations 1.22011 0.87828 1.05557 1.05268 1.23057 0.98963 0.94871 0.81925 0.89673 1.86369 1.21777 1.73308 1.40209 1.19299 0.84455 1.03735 0.94184 1.20826 0.95688 1.01783 0.95383 1.21408 0.92422 0.98559 1.00029 1.21354 1.01676 0.99067 0.90629 1.20770 0.91208 1.01064 1.01020 1.19306 0.94938 1.04841 0.83100 1.86272 1.18756 1.85894 1.31478 1.22548 0.81467 1.02812 0.92365 0.84264 1.22666 0.81443 0.77552 0.86144 1.90719 1.56347 1.42966 1.49879 1.86476 1.23889 1.70476 1.44122 1.23221 0.95660 0.97130 0.83734 1.21120 0.91979 1.02336 0.96896 1.23084 0.98442 1.02648 1.00142 1.84594 1.03209 1.74239 1.33148 1.23098 0.96032 1.40639 1.09135 0.90848 1.26024 0.94451 0.96493 1.01838 1.70139 0.99016 1.44560 1.40488 0.84990 0.78631 0.77884 0.77020 1.18802 1.19710 1.19686 0.89781 0.89174 0.88418 0.83069 0.81551 0.81834 0.84213 0.90223 0.90544 0.89886 0.89523 0.91280 0.91439 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.08 71.98 0.65 -1.61 16 2 C 0.07 1.30 3.16 30.76 0.10 1.39 16 3 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 4 O -0.30 -6.08 10.07 -82.58 -0.83 -6.91 16 5 C 0.03 0.55 6.49 22.56 0.15 0.70 16 6 C -0.12 -1.69 9.96 22.37 0.22 -1.47 16 7 C -0.11 -1.06 10.04 22.26 0.22 -0.84 16 8 C -0.11 -1.20 10.04 22.26 0.22 -0.98 16 9 C -0.12 -2.07 9.96 22.37 0.22 -1.85 16 10 C 0.02 0.48 6.49 22.56 0.15 0.63 16 11 O -0.31 -7.84 9.62 -68.98 -0.66 -8.51 16 12 C 0.07 1.41 3.10 30.01 0.09 1.51 16 13 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 14 C 0.48 12.01 7.17 71.24 0.51 12.52 16 15 O -0.51 -16.31 16.27 28.34 0.46 -15.85 16 16 O -0.33 -7.64 7.55 -51.44 -0.39 -8.02 16 17 C 0.08 1.93 5.47 71.98 0.39 2.32 16 18 C -0.08 -2.43 5.60 30.59 0.17 -2.26 16 19 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 20 S -0.18 -9.21 21.44 -56.49 -1.21 -10.42 16 21 C -0.54 -30.60 9.50 67.95 0.65 -29.95 16 22 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 23 C 0.02 0.96 5.49 84.86 0.47 1.43 16 24 N -0.91 -53.65 13.22 21.65 0.29 -53.36 16 25 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.58 5.66 -2.38 -0.01 1.57 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 37 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -71.93 371.69 5.33 -66.60 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.03 Total: 12.65 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.63 Total: -21.58 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.29 Total: -53.36 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.42 Total: -39.29 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.21 Total: -10.42 kcal Total: -71.93 5.33 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.958 kcal (2) G-P(sol) polarization free energy of solvation -71.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds