Wall clock time and date at job start Tue Mar 31 2020 21:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.74248 * 2 1 4 4 O 1.43173 * 109.71048 * 239.39787 * 2 1 3 5 5 C 1.36110 * 116.71846 * 194.14118 * 4 2 1 6 6 C 1.38697 * 119.39819 * 197.17864 * 5 4 2 7 7 C 1.38196 * 120.06483 * 180.16659 * 6 5 4 8 8 C 1.38254 * 120.11811 * 359.96932 * 7 6 5 9 9 C 1.38205 * 120.10877 * 359.97438 * 8 7 6 10 10 C 1.38702 * 120.06217 * 359.95478 * 9 8 7 11 11 O 1.36112 * 119.38867 * 180.33182 * 10 9 8 12 12 C 1.43181 * 116.69100 * 197.13971 * 11 10 9 13 13 H 1.08998 * 109.74697 * 73.43178 * 12 11 10 14 14 C 1.50693 * 109.70859 * 194.04494 * 12 11 10 15 15 O 1.20832 * 120.00487 * 3.77541 * 14 12 11 16 16 O 1.34232 * 120.00196 * 183.77660 * 14 12 11 17 17 C 1.45196 * 117.00388 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47152 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 16 20 20 S 1.81002 * 109.47089 * 179.97438 * 19 18 17 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 18 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00158 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99736 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46768 * 90.00571 * 25 23 21 27 27 H 1.48501 * 109.47022 * 210.00163 * 25 23 21 28 28 H 1.48495 * 109.47092 * 330.00362 * 25 23 21 29 29 H 1.08999 * 109.47160 * 299.40033 * 1 2 3 30 30 H 1.09002 * 109.47153 * 59.39735 * 1 2 3 31 31 H 1.08998 * 109.47575 * 179.39623 * 1 2 3 32 32 H 1.07999 * 119.97389 * 0.15694 * 6 5 4 33 33 H 1.08005 * 119.94596 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.94833 * 179.97438 * 8 7 6 35 35 H 1.08001 * 119.96791 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.47276 * 60.00299 * 17 16 14 37 37 H 1.09001 * 109.47152 * 299.99885 * 17 16 14 38 38 H 1.09001 * 109.47502 * 60.00355 * 18 17 16 39 39 H 1.09001 * 109.47289 * 300.00152 * 18 17 16 40 40 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 41 41 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 42 42 H 0.96997 * 119.99587 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0128 -0.6862 -1.1601 5 6 3.3290 -1.0327 -1.1625 6 6 3.9435 -1.3646 -2.3609 7 6 5.2783 -1.7219 -2.3788 8 6 6.0051 -1.7488 -1.2030 9 6 5.3992 -1.4181 -0.0057 10 6 4.0602 -1.0572 0.0190 11 8 3.4790 -0.7275 1.2049 12 6 2.0478 -0.7341 1.2435 13 1 1.6840 -1.7616 1.2408 14 6 1.5697 -0.0289 2.4865 15 8 2.3668 0.4936 3.2292 16 8 0.2582 0.0187 2.7688 17 6 -0.1300 0.7141 3.9828 18 6 -1.6515 0.6631 4.1354 19 6 -2.0606 1.3965 5.4144 20 16 -3.8607 1.3369 5.5945 21 6 -4.0469 2.2285 7.1028 22 1 -3.1768 2.6161 7.6120 23 6 -5.3117 2.4318 7.6372 24 7 -5.4508 3.0983 8.7638 25 14 -6.8165 1.7607 6.7570 26 1 -7.1032 0.3873 7.2438 27 1 -7.9831 2.6372 7.0326 28 1 -6.5593 1.7240 5.2949 29 1 -0.3633 0.5045 0.8953 30 1 -0.3633 0.5232 -0.8845 31 1 -0.3634 -1.0276 -0.0108 32 1 3.3782 -1.3441 -3.2809 33 1 5.7550 -1.9796 -3.3131 34 1 7.0480 -2.0288 -1.2201 35 1 5.9690 -1.4403 0.9115 36 1 0.1952 1.7529 3.9263 37 1 0.3373 0.2332 4.8422 38 1 -1.9764 -0.3758 4.1921 39 1 -2.1191 1.1437 3.2760 40 1 -1.5930 0.9163 6.2740 41 1 -1.7358 2.4353 5.3573 42 1 -6.3348 3.2407 9.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805385101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:02 Heat of formation + Delta-G solvation = -137.456331 kcal Electronic energy + Delta-G solvation = -25870.596140 eV Core-core repulsion = 21907.778737 eV Total energy + Delta-G solvation = -3962.817403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.06010 -40.61035 -38.23860 -37.90643 -36.85341 -34.04781 -33.27073 -32.49875 -31.18725 -29.54786 -28.36167 -26.58073 -25.64865 -24.20972 -23.20874 -22.40970 -21.55507 -20.79446 -19.38338 -18.67060 -17.64510 -17.47765 -17.27466 -16.94356 -16.41885 -15.87077 -15.34741 -15.11658 -15.10777 -15.02622 -14.59002 -14.49958 -14.27241 -13.82859 -13.42921 -13.04910 -12.97959 -12.87819 -12.74699 -12.60322 -12.32402 -12.26825 -11.83176 -11.62660 -11.45919 -11.34120 -11.17307 -11.06745 -11.03876 -10.68681 -10.50621 -10.32705 -9.87533 -9.11037 -9.06821 -8.67538 -8.55168 -7.03691 -6.34050 -4.08108 0.83618 0.84887 1.61312 1.67427 2.48390 2.85506 3.05633 3.25524 3.27450 3.39746 3.48621 3.53730 4.06226 4.14409 4.14851 4.25775 4.43763 4.56730 4.69869 4.71101 4.80012 4.89588 4.92629 4.95671 4.97726 5.04754 5.22899 5.24993 5.33223 5.45353 5.56534 5.57152 5.69789 5.70894 5.82193 5.89784 6.02331 6.13136 6.16061 6.22778 6.40072 6.45336 6.90611 7.32472 7.89405 8.38678 9.11087 10.75285 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.036523 B = 0.001818 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.449341 B =15400.208879 C =16023.211946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 H 0.092 0.908 4 O -0.296 6.296 5 C 0.050 3.950 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.108 4.108 10 C 0.051 3.949 11 O -0.284 6.284 12 C 0.065 3.935 13 H 0.124 0.876 14 C 0.473 3.527 15 O -0.475 6.475 16 O -0.345 6.345 17 C 0.071 3.929 18 C -0.101 4.101 19 C -0.086 4.086 20 S -0.204 6.204 21 C -0.506 4.506 22 H 0.089 0.911 23 C 0.093 3.907 24 N -0.879 5.879 25 Si 0.861 3.139 26 H -0.268 1.268 27 H -0.275 1.275 28 H -0.238 1.238 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.829 -10.487 -23.762 32.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 H 0.109 0.891 4 O -0.211 6.211 5 C 0.005 3.995 6 C -0.131 4.131 7 C -0.133 4.133 8 C -0.134 4.134 9 C -0.127 4.127 10 C 0.006 3.994 11 O -0.198 6.198 12 C 0.007 3.993 13 H 0.142 0.858 14 C 0.313 3.687 15 O -0.360 6.360 16 O -0.262 6.262 17 C -0.004 4.004 18 C -0.139 4.139 19 C -0.234 4.234 20 S 0.024 5.976 21 C -0.654 4.654 22 H 0.107 0.893 23 C -0.116 4.116 24 N -0.516 5.516 25 Si 0.686 3.314 26 H -0.193 1.193 27 H -0.200 1.200 28 H -0.162 1.162 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.061 -10.669 -23.961 32.423 hybrid contribution 0.182 0.487 1.007 1.133 sum 19.243 -10.181 -22.954 31.636 Atomic orbital electron populations 1.22024 0.89056 1.04979 1.05077 1.23042 0.98182 0.95440 0.82513 0.89057 1.86390 1.21445 1.73062 1.40159 1.18991 0.84418 1.02588 0.93526 1.20475 0.94771 1.02280 0.95578 1.20971 0.93122 1.00404 0.98769 1.20956 1.00329 1.00622 0.91454 1.20495 0.91691 1.00731 0.99760 1.18975 0.94021 1.03069 0.83343 1.86339 1.18073 1.85206 1.30220 1.22430 0.81716 1.02163 0.93030 0.85833 1.22294 0.81827 0.78502 0.86111 1.90743 1.55475 1.41228 1.48549 1.86460 1.24162 1.70858 1.44691 1.23396 0.96880 0.96792 0.83330 1.21355 0.91061 1.02770 0.98733 1.22951 0.99764 1.02403 0.98281 1.84162 1.02922 1.75278 1.35285 1.22116 0.97582 1.39736 1.05950 0.89285 1.24793 0.98636 0.93854 0.94318 1.69934 1.24301 1.38886 1.18444 0.86676 0.82511 0.79638 0.82540 1.19309 1.20006 1.16157 0.87885 0.90232 0.90495 0.84562 0.84875 0.84820 0.84488 0.90541 0.90544 0.90050 0.90074 0.90940 0.90897 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.11 37.15 0.34 -0.82 16 2 C 0.07 0.60 3.16 -26.53 -0.08 0.51 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 O -0.30 -2.96 10.07 -32.87 -0.33 -3.29 16 5 C 0.05 0.49 6.49 -39.14 -0.25 0.24 16 6 C -0.11 -0.88 9.96 -39.43 -0.39 -1.27 16 7 C -0.11 -0.72 10.04 -39.59 -0.40 -1.12 16 8 C -0.12 -0.75 10.04 -39.59 -0.40 -1.15 16 9 C -0.11 -0.93 9.96 -39.42 -0.39 -1.33 16 10 C 0.05 0.54 6.49 -39.14 -0.25 0.28 16 11 O -0.28 -3.44 9.62 -47.09 -0.45 -3.89 16 12 C 0.06 0.67 3.09 -27.68 -0.09 0.58 16 13 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 14 C 0.47 5.73 7.18 36.00 0.26 5.99 16 15 O -0.47 -7.32 16.27 -25.43 -0.41 -7.74 16 16 O -0.34 -3.88 7.53 -39.26 -0.30 -4.17 16 17 C 0.07 0.86 5.47 37.16 0.20 1.07 16 18 C -0.10 -1.38 5.60 -26.73 -0.15 -1.53 16 19 C -0.09 -1.54 5.67 37.16 0.21 -1.33 16 20 S -0.20 -4.75 19.41 -107.50 -2.09 -6.84 16 21 C -0.51 -14.34 10.04 30.94 0.31 -14.03 16 22 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 23 C 0.09 2.65 5.50 -17.43 -0.10 2.56 16 24 N -0.88 -26.26 13.97 55.49 0.78 -25.49 16 25 Si 0.86 21.00 27.74 -169.99 -4.71 16.29 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.24 -5.63 6.74 56.52 0.38 -5.25 16 29 H 0.10 0.82 5.62 -51.93 -0.29 0.53 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 37 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 41 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -32.85 368.97 -8.93 -41.78 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.79 Total: -0.88 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.18 Total: -11.34 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.78 Total: -25.49 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.49 Total: -19.09 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.29 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -2.09 Total: -6.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.85 -8.93 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.672 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds