Wall clock time and date at job start Tue Mar 31 2020 21:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47205 * 2 1 4 4 O 1.42902 * 109.47140 * 119.99023 * 2 1 3 5 5 C 1.35912 * 117.00465 * 275.15589 * 4 2 1 6 6 C 1.38900 * 119.96935 * 5.45906 * 5 4 2 7 7 C 1.38280 * 120.29250 * 179.70510 * 6 5 4 8 8 C 1.37932 * 120.23825 * 359.97438 * 7 6 5 9 9 C 1.39838 * 119.93867 * 0.02562 * 8 7 6 10 10 C 1.47177 * 120.14817 * 180.02562 * 9 8 7 11 11 O 1.21253 * 120.00257 * 359.97438 * 10 9 8 12 12 C 1.38382 * 119.96924 * 185.19013 * 5 4 2 13 13 C 1.50696 * 109.47662 * 239.99779 * 2 1 3 14 14 O 1.20825 * 119.99861 * 245.00457 * 13 2 1 15 15 O 1.34224 * 120.00307 * 64.99575 * 13 2 1 16 16 C 1.45200 * 117.00409 * 180.02562 * 15 13 2 17 17 C 1.52995 * 109.47460 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47052 * 179.97438 * 17 16 15 19 19 S 1.81001 * 109.46854 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00093 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99906 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00047 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99896 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00148 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47178 * 89.99654 * 24 22 20 26 26 H 1.48506 * 109.47153 * 209.99471 * 24 22 20 27 27 H 1.48504 * 109.47101 * 329.99614 * 24 22 20 28 28 H 1.09001 * 109.46758 * 60.00562 * 1 2 3 29 29 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47638 * 300.00878 * 1 2 3 31 31 H 1.08003 * 119.84850 * 359.72679 * 6 5 4 32 32 H 1.08006 * 119.88176 * 180.02562 * 7 6 5 33 33 H 1.08001 * 120.03490 * 180.02562 * 8 7 6 34 34 H 1.08005 * 119.99875 * 180.02562 * 10 9 8 35 35 H 1.07994 * 120.12239 * 0.24937 * 12 5 4 36 36 H 1.09005 * 109.46911 * 300.00227 * 16 15 13 37 37 H 1.09000 * 109.47266 * 59.99528 * 16 15 13 38 38 H 1.09005 * 109.47060 * 299.99911 * 17 16 15 39 39 H 1.09005 * 109.47362 * 59.99877 * 17 16 15 40 40 H 1.08991 * 109.47458 * 299.99484 * 18 17 16 41 41 H 1.08998 * 109.47180 * 60.00505 * 18 17 16 42 42 H 0.96995 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6734 1.1669 5 6 2.1094 0.0622 2.3051 6 6 1.6528 1.3737 2.3273 7 6 1.7488 2.1263 3.4835 8 6 2.2987 1.5797 4.6243 9 6 2.7616 0.2602 4.6129 10 6 3.3486 -0.3277 5.8277 11 8 3.4321 0.3324 6.8414 12 6 2.6642 -0.4981 3.4423 13 6 2.0324 -0.7104 -1.2304 14 8 2.6507 -1.7428 -1.1217 15 8 1.7930 -0.1965 -2.4470 16 6 2.3063 -0.9346 -3.5872 17 6 1.9385 -0.2000 -4.8778 18 6 2.4799 -0.9775 -6.0792 19 16 2.0442 -0.1087 -7.6061 20 6 2.7688 -1.1920 -8.7920 21 1 3.2870 -2.0815 -8.4652 22 6 2.6727 -0.9028 -10.1461 23 7 3.2136 -1.7123 -11.0319 24 14 1.7758 0.6352 -10.7113 25 1 2.7348 1.7662 -10.7914 26 1 1.1791 0.3964 -12.0501 27 1 0.7005 0.9657 -9.7419 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.2204 1.8076 1.4378 32 1 1.3912 3.1454 3.4935 33 1 2.3717 2.1703 5.5256 34 1 3.7057 -1.3469 5.8161 35 1 3.0193 -1.5178 3.4262 36 1 3.3908 -1.0133 -3.5107 37 1 1.8696 -1.9332 -3.6000 38 1 0.8540 -0.1209 -4.9545 39 1 2.3756 0.7985 -4.8648 40 1 3.5643 -1.0561 -6.0024 41 1 2.0431 -1.9760 -6.0925 42 1 3.1468 -1.5101 -11.9782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805428322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:19 Heat of formation + Delta-G solvation = -138.827307 kcal Electronic energy + Delta-G solvation = -24737.372105 eV Core-core repulsion = 20774.495252 eV Total energy + Delta-G solvation = -3962.876853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35285 -40.46290 -39.50574 -37.75263 -36.76795 -33.86750 -32.84115 -32.49767 -31.87821 -30.32725 -27.06736 -25.77067 -25.64618 -24.95211 -23.19859 -22.14701 -21.52779 -20.63938 -18.90869 -18.02518 -17.49142 -17.32261 -16.98545 -16.69812 -16.40247 -16.12752 -15.82534 -15.09353 -14.98775 -14.86915 -14.64975 -14.44317 -14.30336 -13.95857 -13.63384 -13.17938 -12.98444 -12.89291 -12.81160 -12.60769 -12.43235 -12.23525 -11.79071 -11.63568 -11.59007 -11.32700 -11.16683 -11.04750 -10.72452 -10.49040 -10.37211 -10.30781 -9.87295 -9.65731 -9.06717 -8.86797 -8.67196 -7.03457 -6.33972 -4.07978 0.02087 0.80871 1.68721 1.82000 1.89010 2.81581 3.01833 3.20698 3.25407 3.39716 3.49535 3.68265 4.00790 4.18434 4.21471 4.25261 4.27721 4.37104 4.59985 4.63761 4.71787 4.82333 4.87218 4.92626 5.00276 5.03709 5.04916 5.06919 5.27578 5.31582 5.50567 5.58303 5.58612 5.62225 5.68611 5.82577 5.93099 5.99459 6.19615 6.24355 6.47033 6.68826 6.84616 7.42323 7.89503 8.38779 9.11202 10.75408 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.001504 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.059468 B =18607.379604 C =18958.031061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 H 0.112 0.888 4 O -0.287 6.287 5 C 0.118 3.882 6 C -0.178 4.178 7 C -0.091 4.091 8 C -0.097 4.097 9 C -0.155 4.155 10 C 0.386 3.614 11 O -0.456 6.456 12 C -0.097 4.097 13 C 0.464 3.536 14 O -0.483 6.483 15 O -0.350 6.350 16 C 0.073 3.927 17 C -0.101 4.101 18 C -0.085 4.085 19 S -0.205 6.205 20 C -0.506 4.506 21 H 0.089 0.911 22 C 0.093 3.907 23 N -0.879 5.879 24 Si 0.861 3.139 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.238 1.238 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 6.384 31.189 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.037 3.963 3 H 0.130 0.870 4 O -0.201 6.201 5 C 0.073 3.927 6 C -0.196 4.196 7 C -0.109 4.109 8 C -0.115 4.115 9 C -0.156 4.156 10 C 0.244 3.756 11 O -0.329 6.329 12 C -0.115 4.115 13 C 0.304 3.696 14 O -0.369 6.369 15 O -0.267 6.267 16 C -0.001 4.001 17 C -0.139 4.139 18 C -0.234 4.234 19 S 0.023 5.977 20 C -0.654 4.654 21 H 0.107 0.893 22 C -0.116 4.116 23 N -0.516 5.516 24 Si 0.686 3.314 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.162 1.162 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.162 0.838 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.380 7.115 31.317 32.563 hybrid contribution 0.422 -0.601 -0.751 1.050 sum -4.959 6.515 30.566 31.643 Atomic orbital electron populations 1.22354 0.91194 1.04969 1.04839 1.21665 0.96391 0.96597 0.81639 0.87008 1.86176 1.81383 1.36911 1.15588 1.18857 0.96721 0.90511 0.86596 1.21641 1.03746 0.93895 1.00368 1.20981 0.97988 1.00056 0.91904 1.21386 0.96875 0.94354 0.98917 1.20763 1.03407 0.95589 0.95829 1.24108 0.73794 0.92732 0.85000 1.90538 1.44137 1.64400 1.33814 1.20648 0.99974 1.01057 0.89866 1.22832 0.77707 0.84065 0.84968 1.90726 1.36325 1.22806 1.87027 1.86416 1.72409 1.53247 1.14583 1.23334 0.99551 0.95397 0.81853 1.21342 1.02910 0.99874 0.89786 1.22949 1.03123 1.01553 0.95744 1.84159 1.75622 1.38217 0.99732 1.22118 1.40683 1.10746 0.91825 0.89289 1.24786 0.94423 0.96837 0.95516 1.69933 1.43011 1.36761 1.01890 0.86675 0.81730 0.83200 0.79759 1.19314 1.19998 1.16172 0.88874 0.90393 0.90172 0.84460 0.84798 0.84696 0.87298 0.83818 0.90716 0.90665 0.90123 0.90164 0.90948 0.90898 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 9.14 37.16 0.34 -0.69 16 2 C 0.09 0.75 2.75 -27.89 -0.08 0.68 16 3 H 0.11 0.63 6.31 -51.93 -0.33 0.31 16 4 O -0.29 -2.70 9.33 -39.37 -0.37 -3.06 16 5 C 0.12 0.90 6.59 -39.28 -0.26 0.64 16 6 C -0.18 -1.05 8.23 -39.32 -0.32 -1.38 16 7 C -0.09 -0.50 10.02 -39.68 -0.40 -0.90 16 8 C -0.10 -0.63 9.59 -39.10 -0.38 -1.00 16 9 C -0.15 -1.00 5.87 -105.08 -0.62 -1.61 16 10 C 0.39 2.25 11.46 34.36 0.39 2.64 16 11 O -0.46 -4.34 17.16 5.58 0.10 -4.25 16 12 C -0.10 -0.64 9.73 -38.94 -0.38 -1.02 16 13 C 0.46 5.34 7.29 36.00 0.26 5.60 16 14 O -0.48 -7.22 16.26 -25.46 -0.41 -7.63 16 15 O -0.35 -4.04 10.21 -39.24 -0.40 -4.44 16 16 C 0.07 0.92 5.47 37.16 0.20 1.13 16 17 C -0.10 -1.42 5.60 -26.73 -0.15 -1.57 16 18 C -0.09 -1.55 5.67 37.16 0.21 -1.34 16 19 S -0.20 -4.80 19.41 -107.50 -2.09 -6.88 16 20 C -0.51 -14.36 10.04 30.94 0.31 -14.05 16 21 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 22 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16 23 N -0.88 -26.26 13.97 55.49 0.78 -25.48 16 24 Si 0.86 20.99 27.74 -169.99 -4.71 16.28 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.24 -5.64 6.74 56.52 0.38 -5.26 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.34 6.90 -51.93 -0.36 -0.02 16 31 H 0.14 0.55 5.40 -52.48 -0.28 0.27 16 32 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 33 H 0.14 0.82 7.64 -52.49 -0.40 0.42 16 34 H 0.11 0.24 8.06 -52.48 -0.42 -0.19 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 37 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 41 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -34.63 379.88 -7.94 -42.57 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.60 Total: -2.54 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.95 Total: -10.29 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.78 Total: -25.48 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.09 Total: -19.39 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.28 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.09 Total: -6.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.63 -7.94 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805428322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.254 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds