Wall clock time and date at job start Tue Mar 31 2020 21:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47205 * 2 1 4 4 O 1.42902 * 109.47140 * 119.99023 * 2 1 3 5 5 C 1.35912 * 117.00465 * 275.15589 * 4 2 1 6 6 C 1.38900 * 119.96935 * 5.45906 * 5 4 2 7 7 C 1.38280 * 120.29250 * 179.70510 * 6 5 4 8 8 C 1.37932 * 120.23825 * 359.97438 * 7 6 5 9 9 C 1.39838 * 119.93867 * 0.02562 * 8 7 6 10 10 C 1.47177 * 120.14817 * 180.02562 * 9 8 7 11 11 O 1.21253 * 120.00257 * 359.97438 * 10 9 8 12 12 C 1.38382 * 119.96924 * 185.19013 * 5 4 2 13 13 C 1.50696 * 109.47662 * 239.99779 * 2 1 3 14 14 O 1.20825 * 119.99861 * 245.00457 * 13 2 1 15 15 O 1.34224 * 120.00307 * 64.99575 * 13 2 1 16 16 C 1.45200 * 117.00409 * 180.02562 * 15 13 2 17 17 C 1.52995 * 109.47460 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47052 * 179.97438 * 17 16 15 19 19 S 1.81001 * 109.46854 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00093 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99906 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00047 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99896 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00148 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47178 * 89.99654 * 24 22 20 26 26 H 1.48506 * 109.47153 * 209.99471 * 24 22 20 27 27 H 1.48504 * 109.47101 * 329.99614 * 24 22 20 28 28 H 1.09001 * 109.46758 * 60.00562 * 1 2 3 29 29 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47638 * 300.00878 * 1 2 3 31 31 H 1.08003 * 119.84850 * 359.72679 * 6 5 4 32 32 H 1.08006 * 119.88176 * 180.02562 * 7 6 5 33 33 H 1.08001 * 120.03490 * 180.02562 * 8 7 6 34 34 H 1.08005 * 119.99875 * 180.02562 * 10 9 8 35 35 H 1.07994 * 120.12239 * 0.24937 * 12 5 4 36 36 H 1.09005 * 109.46911 * 300.00227 * 16 15 13 37 37 H 1.09000 * 109.47266 * 59.99528 * 16 15 13 38 38 H 1.09005 * 109.47060 * 299.99911 * 17 16 15 39 39 H 1.09005 * 109.47362 * 59.99877 * 17 16 15 40 40 H 1.08991 * 109.47458 * 299.99484 * 18 17 16 41 41 H 1.08998 * 109.47180 * 60.00505 * 18 17 16 42 42 H 0.96995 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6734 1.1669 5 6 2.1094 0.0622 2.3051 6 6 1.6528 1.3737 2.3273 7 6 1.7488 2.1263 3.4835 8 6 2.2987 1.5797 4.6243 9 6 2.7616 0.2602 4.6129 10 6 3.3486 -0.3277 5.8277 11 8 3.4321 0.3324 6.8414 12 6 2.6642 -0.4981 3.4423 13 6 2.0324 -0.7104 -1.2304 14 8 2.6507 -1.7428 -1.1217 15 8 1.7930 -0.1965 -2.4470 16 6 2.3063 -0.9346 -3.5872 17 6 1.9385 -0.2000 -4.8778 18 6 2.4799 -0.9775 -6.0792 19 16 2.0442 -0.1087 -7.6061 20 6 2.7688 -1.1920 -8.7920 21 1 3.2870 -2.0815 -8.4652 22 6 2.6727 -0.9028 -10.1461 23 7 3.2136 -1.7123 -11.0319 24 14 1.7758 0.6352 -10.7113 25 1 2.7348 1.7662 -10.7914 26 1 1.1791 0.3964 -12.0501 27 1 0.7005 0.9657 -9.7419 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.2204 1.8076 1.4378 32 1 1.3912 3.1454 3.4935 33 1 2.3717 2.1703 5.5256 34 1 3.7057 -1.3469 5.8161 35 1 3.0193 -1.5178 3.4262 36 1 3.3908 -1.0133 -3.5107 37 1 1.8696 -1.9332 -3.6000 38 1 0.8540 -0.1209 -4.9545 39 1 2.3756 0.7985 -4.8648 40 1 3.5643 -1.0561 -6.0024 41 1 2.0431 -1.9760 -6.0925 42 1 3.1468 -1.5101 -11.9782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805428322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:18 Heat of formation + Delta-G solvation = -158.550262 kcal Electronic energy + Delta-G solvation = -24738.227357 eV Core-core repulsion = 20774.495252 eV Total energy + Delta-G solvation = -3963.732105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07150 -41.15902 -40.09713 -38.36014 -37.69699 -35.03517 -34.68540 -33.44137 -32.35637 -30.81036 -28.33606 -27.75808 -26.17877 -25.68250 -23.65211 -23.00775 -22.59252 -21.27593 -19.66584 -19.45348 -18.65487 -18.22303 -17.86507 -17.24761 -17.10564 -16.93132 -16.78663 -16.47296 -16.14863 -15.87818 -15.40308 -15.28523 -14.95169 -14.77485 -14.56560 -14.46989 -14.22220 -14.03351 -13.61858 -13.41402 -13.35883 -13.04729 -13.00438 -12.68498 -12.62760 -12.44795 -12.32283 -12.24649 -12.09988 -11.79519 -11.56528 -11.44319 -11.16472 -10.85908 -10.60699 -10.09943 -9.37439 -9.00334 -8.51984 -6.24300 -0.43638 0.33513 0.87085 0.93986 1.16775 1.33554 1.43713 1.48422 1.72180 2.24774 2.30089 2.65702 2.75161 2.86287 3.29808 3.30797 3.59410 3.71833 3.77892 3.82759 3.92170 3.97109 4.08413 4.15251 4.19327 4.27360 4.39186 4.44761 4.52213 4.61844 4.64500 4.66796 4.91668 4.98685 5.03820 5.09833 5.14106 5.25022 5.31175 5.39317 5.53873 5.69072 6.10182 6.18048 6.40706 6.52429 6.91560 8.61074 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.001504 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.059468 B =18607.379604 C =18958.031061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 H 0.140 0.860 4 O -0.310 6.310 5 C 0.098 3.902 6 C -0.174 4.174 7 C -0.091 4.091 8 C -0.109 4.109 9 C -0.165 4.165 10 C 0.393 3.607 11 O -0.498 6.498 12 C -0.101 4.101 13 C 0.464 3.536 14 O -0.524 6.524 15 O -0.342 6.342 16 C 0.078 3.922 17 C -0.087 4.087 18 C -0.076 4.076 19 S -0.203 6.203 20 C -0.528 4.528 21 H 0.050 0.950 22 C 0.038 3.962 23 N -0.922 5.922 24 Si 0.926 3.074 25 H -0.261 1.261 26 H -0.264 1.264 27 H -0.225 1.225 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 8.498 32.287 34.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.040 3.960 3 H 0.157 0.843 4 O -0.224 6.224 5 C 0.054 3.946 6 C -0.193 4.193 7 C -0.109 4.109 8 C -0.127 4.127 9 C -0.166 4.166 10 C 0.254 3.746 11 O -0.374 6.374 12 C -0.119 4.119 13 C 0.306 3.694 14 O -0.412 6.412 15 O -0.259 6.259 16 C 0.003 3.997 17 C -0.125 4.125 18 C -0.225 4.225 19 S 0.025 5.975 20 C -0.676 4.676 21 H 0.068 0.932 22 C -0.167 4.167 23 N -0.560 5.560 24 Si 0.747 3.253 25 H -0.185 1.185 26 H -0.189 1.189 27 H -0.148 1.148 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.172 0.828 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.842 9.230 32.421 34.396 hybrid contribution 0.928 -1.342 -0.993 1.910 sum -5.914 7.888 31.428 32.938 Atomic orbital electron populations 1.22376 0.89366 1.04739 1.06377 1.21864 0.97529 0.96916 0.79696 0.84311 1.86138 1.81971 1.38015 1.16280 1.19072 0.97927 0.91341 0.86280 1.21880 1.02969 0.93157 1.01251 1.21261 0.97282 1.01083 0.91251 1.21590 0.97076 0.94609 0.99437 1.20900 1.03804 0.95800 0.96110 1.24665 0.72244 0.93796 0.83885 1.90530 1.46068 1.65634 1.35129 1.20813 0.99734 1.01659 0.89733 1.23650 0.76552 0.83607 0.85552 1.90712 1.38322 1.24741 1.87418 1.86405 1.72154 1.52796 1.14530 1.23101 0.99560 0.95206 0.81852 1.21152 1.03255 0.99571 0.88521 1.22988 1.03264 1.01542 0.94693 1.83766 1.75203 1.37702 1.00809 1.22373 1.40726 1.10700 0.93759 0.93179 1.25800 0.95146 1.00187 0.95557 1.70043 1.44514 1.38925 1.02545 0.85702 0.80839 0.78917 0.79814 1.18549 1.18871 1.14846 0.87699 0.91551 0.88200 0.82326 0.82436 0.84880 0.83382 0.82790 0.90820 0.90695 0.89178 0.89282 0.91147 0.91060 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.14 71.98 0.66 -0.88 16 2 C 0.10 1.33 2.75 29.85 0.08 1.41 16 3 H 0.14 1.11 6.31 -2.38 -0.02 1.09 16 4 O -0.31 -5.38 9.33 -73.53 -0.69 -6.07 16 5 C 0.10 1.33 6.59 22.46 0.15 1.48 16 6 C -0.17 -1.61 8.23 22.44 0.18 -1.42 16 7 C -0.09 -0.79 10.02 22.21 0.22 -0.56 16 8 C -0.11 -1.28 9.59 22.58 0.22 -1.06 16 9 C -0.17 -1.96 5.87 -20.16 -0.12 -2.07 16 10 C 0.39 4.23 11.46 70.17 0.80 5.03 16 11 O -0.50 -9.42 17.16 -2.94 -0.05 -9.47 16 12 C -0.10 -1.22 9.73 22.68 0.22 -1.00 16 13 C 0.46 9.99 7.29 71.23 0.52 10.51 16 14 O -0.52 -15.44 16.26 28.39 0.46 -14.98 16 15 O -0.34 -7.17 10.21 -51.36 -0.52 -7.69 16 16 C 0.08 1.84 5.47 71.98 0.39 2.24 16 17 C -0.09 -2.25 5.60 30.59 0.17 -2.07 16 18 C -0.08 -2.71 5.67 71.98 0.41 -2.30 16 19 S -0.20 -9.27 19.41 -56.49 -1.10 -10.37 16 20 C -0.53 -30.50 10.04 67.95 0.68 -29.82 16 21 H 0.05 3.16 8.03 -2.91 -0.02 3.14 16 22 C 0.04 2.19 5.50 84.86 0.47 2.65 16 23 N -0.92 -56.15 13.97 21.65 0.30 -55.85 16 24 Si 0.93 42.81 27.74 68.60 1.90 44.72 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.23 -9.87 6.74 99.48 0.67 -9.20 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.52 6.90 -2.39 -0.02 0.50 16 31 H 0.16 0.67 5.40 -2.91 -0.02 0.66 16 32 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.13 1.57 7.64 -2.91 -0.02 1.55 16 34 H 0.15 0.35 8.06 -2.91 -0.02 0.33 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.07 1.77 8.13 -2.38 -0.02 1.75 16 37 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 38 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 41 H 0.07 2.55 8.14 -2.40 -0.02 2.53 16 42 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -76.78 379.88 6.36 -70.42 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.99 Total: 7.17 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 5.06 Total: -17.87 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.30 Total: -55.85 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.80 Total: -38.22 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.90 Total: 44.72 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.10 Total: -10.37 kcal Total: -76.78 6.36 -70.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805428322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.129 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds