Wall clock time and date at job start Tue Mar 31 2020 21:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 116.99754 * 2 1 4 4 O 1.21466 * 120.00508 * 0.02562 * 3 2 1 5 5 C 1.47728 * 119.99684 * 179.97438 * 3 2 1 6 6 C 1.39646 * 120.15426 * 5.70702 * 5 3 2 7 7 C 1.37921 * 119.84924 * 180.31788 * 6 5 3 8 8 C 1.38383 * 120.15130 * 359.66138 * 7 6 5 9 9 C 1.38345 * 120.30452 * 359.97438 * 8 7 6 10 10 C 1.37970 * 120.14929 * 0.05160 * 9 8 7 11 11 C 1.50696 * 120.07857 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47418 * 100.38605 * 11 10 9 13 13 O 1.20826 * 120.00015 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00319 * 180.02562 * 12 11 10 15 15 C 1.45196 * 117.00124 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47058 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47278 * 179.97438 * 16 15 14 18 18 S 1.80992 * 109.47140 * 179.97438 * 17 16 15 19 19 C 1.76202 * 100.00041 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99815 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00117 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00199 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46785 * 60.00008 * 23 21 19 25 25 H 1.48491 * 109.47412 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46653 * 300.00248 * 23 21 19 27 27 H 1.08995 * 109.47672 * 299.99777 * 1 2 3 28 28 H 1.09001 * 109.47054 * 60.00093 * 1 2 3 29 29 H 1.09004 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.07249 * 359.97438 * 6 5 3 31 31 H 1.08006 * 119.92448 * 179.68236 * 7 6 5 32 32 H 1.07999 * 119.84939 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.93032 * 180.02562 * 9 8 7 34 34 H 1.09006 * 109.46836 * 340.38796 * 11 10 9 35 35 H 1.08994 * 109.47136 * 220.38775 * 11 10 9 36 36 H 1.09003 * 109.46828 * 299.99453 * 15 14 12 37 37 H 1.08997 * 109.47406 * 59.99629 * 15 14 12 38 38 H 1.08999 * 109.47318 * 299.99876 * 16 15 14 39 39 H 1.09006 * 109.47259 * 59.99770 * 16 15 14 40 40 H 1.08999 * 109.47122 * 300.00336 * 17 16 15 41 41 H 1.09004 * 109.46378 * 59.99885 * 17 16 15 42 42 H 0.97003 * 120.00258 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3022 0.1144 -0.1190 7 6 5.6791 0.1932 -0.1111 8 6 6.3044 1.4220 0.0078 9 6 5.5542 2.5791 0.1191 10 6 4.1760 2.5147 0.1131 11 6 3.3605 3.7760 0.2350 12 6 2.8729 4.1927 -1.1287 13 8 3.1588 3.5334 -2.1000 14 8 2.1219 5.2969 -1.2645 15 6 1.6873 5.6374 -2.6074 16 6 0.8483 6.9162 -2.5630 17 6 0.3907 7.2754 -3.9781 18 16 -0.6024 8.7876 -3.9255 19 6 -0.9846 8.9624 -5.6366 20 1 -0.6168 8.2386 -6.3487 21 6 -1.7594 10.0297 -6.0692 22 7 -2.2081 10.9116 -5.2012 23 14 -2.1653 10.2146 -7.8832 24 1 -2.9118 9.0179 -8.3478 25 1 -2.9990 11.4270 -8.0828 26 1 -0.9071 10.3460 -8.6610 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.8155 -0.8453 -0.2118 31 1 6.2708 -0.7062 -0.1983 32 1 7.3829 1.4781 0.0130 33 1 6.0485 3.5349 0.2112 34 1 3.9780 4.5685 0.6578 35 1 2.5058 3.5945 0.8866 36 1 2.5591 5.7964 -3.2421 37 1 1.0866 4.8231 -3.0124 38 1 -0.0235 6.7569 -1.9284 39 1 1.4486 7.7308 -2.1579 40 1 1.2627 7.4348 -4.6124 41 1 -0.2095 6.4608 -4.3836 42 1 -2.7493 11.6578 -5.5035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805522310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:08 Heat of formation + Delta-G solvation = -155.315318 kcal Electronic energy + Delta-G solvation = -25705.376008 eV Core-core repulsion = 21741.784181 eV Total energy + Delta-G solvation = -3963.591827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25789 -40.18375 -39.15328 -36.88694 -36.49032 -33.52803 -33.14745 -32.42206 -31.97110 -28.87424 -27.90396 -26.32140 -25.38830 -24.34050 -22.73532 -21.56831 -21.23600 -20.57394 -18.31348 -17.76270 -17.34617 -17.33737 -16.70124 -16.66421 -16.43459 -15.92865 -15.55235 -15.05039 -14.80161 -14.55202 -14.29499 -13.89237 -13.80705 -13.58342 -13.26816 -12.97242 -12.86956 -12.54035 -12.49910 -12.21548 -12.19263 -12.04890 -11.60813 -11.27183 -11.12156 -11.08256 -10.90630 -10.89614 -10.66298 -10.54858 -10.43307 -10.18668 -9.62056 -9.47206 -9.29706 -9.04996 -8.33088 -6.53805 -6.22498 -3.93370 0.27012 0.83941 2.15113 2.32469 2.38175 2.70809 3.22841 3.24320 3.28637 3.38328 3.60658 4.14107 4.22188 4.22510 4.41843 4.53178 4.79520 4.80568 4.85389 4.90465 4.93962 5.09649 5.13252 5.18701 5.21106 5.24300 5.28316 5.37178 5.43562 5.51344 5.56866 5.78020 5.83804 5.86835 5.95397 5.97465 6.10117 6.23390 6.36674 6.50825 6.57075 6.74942 7.39009 7.60798 7.86311 8.36781 9.23551 10.85583 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.001946 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.796913 B =14385.077932 C =15028.729459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.508 3.492 4 O -0.498 6.498 5 C -0.111 4.111 6 C -0.061 4.061 7 C -0.132 4.132 8 C -0.081 4.081 9 C -0.118 4.118 10 C -0.009 4.009 11 C -0.086 4.086 12 C 0.481 3.519 13 O -0.513 6.513 14 O -0.353 6.353 15 C 0.075 3.925 16 C -0.097 4.097 17 C -0.114 4.114 18 S -0.124 6.124 19 C -0.518 4.518 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.920 3.080 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.435 -24.071 15.606 32.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.353 3.647 4 O -0.387 6.387 5 C -0.112 4.112 6 C -0.079 4.079 7 C -0.150 4.150 8 C -0.099 4.099 9 C -0.136 4.136 10 C -0.009 4.009 11 C -0.123 4.123 12 C 0.324 3.676 13 O -0.401 6.401 14 O -0.269 6.269 15 C 0.000 4.000 16 C -0.136 4.136 17 C -0.262 4.262 18 S 0.104 5.896 19 C -0.666 4.666 20 H 0.091 0.909 21 C -0.138 4.138 22 N -0.505 5.505 23 Si 0.746 3.254 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.838 -23.118 16.183 31.883 hybrid contribution -0.185 -0.647 -2.429 2.520 sum 14.653 -23.765 13.755 31.123 Atomic orbital electron populations 1.23325 0.75481 1.03876 1.03036 1.86509 1.23939 1.32478 1.84292 1.21198 0.89086 0.81623 0.72788 1.90835 1.66943 1.35540 1.45372 1.18897 0.89076 0.94579 1.08665 1.21435 0.94015 0.97700 0.94743 1.21191 0.94283 0.98330 1.01152 1.21426 1.00490 0.92257 0.95741 1.21040 0.92182 0.99476 1.00921 1.19385 0.93728 0.92307 0.95512 1.20497 1.01946 0.95487 0.94350 1.22996 0.75139 0.78243 0.91209 1.90651 1.55234 1.53139 1.41115 1.86447 1.63055 1.42583 1.34852 1.23212 0.98702 0.98254 0.79829 1.21277 0.99731 0.94995 0.97572 1.23178 1.02680 1.03284 0.97087 1.84642 1.64286 1.26523 1.14100 1.22656 1.38250 1.14158 0.91572 0.90921 1.25018 0.95017 0.94828 0.98923 1.70010 1.33485 1.12875 1.34137 0.86204 0.78523 0.77736 0.82958 1.19923 1.20800 1.19918 0.91573 0.91534 0.87869 0.84308 0.84930 0.84986 0.84673 0.86972 0.84800 0.91352 0.91404 0.90354 0.90385 0.91778 0.91807 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.55 9.83 -40.51 -0.40 -3.95 16 3 C 0.51 6.03 7.82 34.61 0.27 6.30 16 4 O -0.50 -7.01 12.05 -19.24 -0.23 -7.24 16 5 C -0.11 -1.17 5.77 -104.98 -0.61 -1.77 16 6 C -0.06 -0.49 9.62 -39.17 -0.38 -0.87 16 7 C -0.13 -0.84 10.03 -39.64 -0.40 -1.23 16 8 C -0.08 -0.51 10.04 -39.49 -0.40 -0.91 16 9 C -0.12 -0.92 9.66 -39.64 -0.38 -1.30 16 10 C -0.01 -0.09 4.46 -104.21 -0.46 -0.55 16 11 C -0.09 -0.91 5.24 -29.04 -0.15 -1.07 16 12 C 0.48 7.10 6.46 36.00 0.23 7.34 16 13 O -0.51 -8.85 15.70 -18.75 -0.29 -9.14 16 14 O -0.35 -5.54 10.22 -39.25 -0.40 -5.94 16 15 C 0.08 1.21 5.47 37.16 0.20 1.42 16 16 C -0.10 -1.71 5.60 -26.73 -0.15 -1.86 16 17 C -0.11 -2.37 5.67 37.16 0.21 -2.16 16 18 S -0.12 -3.29 21.44 -107.50 -2.30 -5.60 16 19 C -0.52 -15.06 9.50 30.94 0.29 -14.76 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 23 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.14 0.89 7.63 -52.49 -0.40 0.49 16 31 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 32 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.14 0.77 8.03 -52.49 -0.42 0.35 16 34 H 0.11 0.84 8.00 -51.93 -0.42 0.42 16 35 H 0.13 1.45 6.09 -51.93 -0.32 1.13 16 36 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 37 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 41 H 0.06 1.32 8.14 -51.91 -0.42 0.90 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -35.75 379.95 -8.68 -44.43 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.75 Total: -1.45 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.74 Total: -8.14 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.73 Total: -25.45 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.33 Total: -26.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.30 Total: -5.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.75 -8.68 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805522310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.881 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds