Wall clock time and date at job start Tue Mar 31 2020 21:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 116.99754 * 2 1 4 4 O 1.21466 * 120.00508 * 0.02562 * 3 2 1 5 5 C 1.47728 * 119.99684 * 179.97438 * 3 2 1 6 6 C 1.39646 * 120.15426 * 5.70702 * 5 3 2 7 7 C 1.37921 * 119.84924 * 180.31788 * 6 5 3 8 8 C 1.38383 * 120.15130 * 359.66138 * 7 6 5 9 9 C 1.38345 * 120.30452 * 359.97438 * 8 7 6 10 10 C 1.37970 * 120.14929 * 0.05160 * 9 8 7 11 11 C 1.50696 * 120.07857 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47418 * 100.38605 * 11 10 9 13 13 O 1.20826 * 120.00015 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00319 * 180.02562 * 12 11 10 15 15 C 1.45196 * 117.00124 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47058 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47278 * 179.97438 * 16 15 14 18 18 S 1.80992 * 109.47140 * 179.97438 * 17 16 15 19 19 C 1.76202 * 100.00041 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99815 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00117 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00199 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46785 * 60.00008 * 23 21 19 25 25 H 1.48491 * 109.47412 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46653 * 300.00248 * 23 21 19 27 27 H 1.08995 * 109.47672 * 299.99777 * 1 2 3 28 28 H 1.09001 * 109.47054 * 60.00093 * 1 2 3 29 29 H 1.09004 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.07249 * 359.97438 * 6 5 3 31 31 H 1.08006 * 119.92448 * 179.68236 * 7 6 5 32 32 H 1.07999 * 119.84939 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.93032 * 180.02562 * 9 8 7 34 34 H 1.09006 * 109.46836 * 340.38796 * 11 10 9 35 35 H 1.08994 * 109.47136 * 220.38775 * 11 10 9 36 36 H 1.09003 * 109.46828 * 299.99453 * 15 14 12 37 37 H 1.08997 * 109.47406 * 59.99629 * 15 14 12 38 38 H 1.08999 * 109.47318 * 299.99876 * 16 15 14 39 39 H 1.09006 * 109.47259 * 59.99770 * 16 15 14 40 40 H 1.08999 * 109.47122 * 300.00336 * 17 16 15 41 41 H 1.09004 * 109.46378 * 59.99885 * 17 16 15 42 42 H 0.97003 * 120.00258 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3022 0.1144 -0.1190 7 6 5.6791 0.1932 -0.1111 8 6 6.3044 1.4220 0.0078 9 6 5.5542 2.5791 0.1191 10 6 4.1760 2.5147 0.1131 11 6 3.3605 3.7760 0.2350 12 6 2.8729 4.1927 -1.1287 13 8 3.1588 3.5334 -2.1000 14 8 2.1219 5.2969 -1.2645 15 6 1.6873 5.6374 -2.6074 16 6 0.8483 6.9162 -2.5630 17 6 0.3907 7.2754 -3.9781 18 16 -0.6024 8.7876 -3.9255 19 6 -0.9846 8.9624 -5.6366 20 1 -0.6168 8.2386 -6.3487 21 6 -1.7594 10.0297 -6.0692 22 7 -2.2081 10.9116 -5.2012 23 14 -2.1653 10.2146 -7.8832 24 1 -2.9118 9.0179 -8.3478 25 1 -2.9990 11.4270 -8.0828 26 1 -0.9071 10.3460 -8.6610 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.8155 -0.8453 -0.2118 31 1 6.2708 -0.7062 -0.1983 32 1 7.3829 1.4781 0.0130 33 1 6.0485 3.5349 0.2112 34 1 3.9780 4.5685 0.6578 35 1 2.5058 3.5945 0.8866 36 1 2.5591 5.7964 -3.2421 37 1 1.0866 4.8231 -3.0124 38 1 -0.0235 6.7569 -1.9284 39 1 1.4486 7.7308 -2.1579 40 1 1.2627 7.4348 -4.6124 41 1 -0.2095 6.4608 -4.3836 42 1 -2.7493 11.6578 -5.5035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805522310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:08 Heat of formation + Delta-G solvation = -174.954890 kcal Electronic energy + Delta-G solvation = -25706.227644 eV Core-core repulsion = 21741.784181 eV Total energy + Delta-G solvation = -3964.443463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11096 -41.26638 -39.83144 -37.88533 -37.55735 -34.95874 -34.60449 -33.95158 -32.56930 -29.67399 -28.63492 -28.00917 -27.23897 -25.01359 -23.52414 -22.77451 -22.35488 -21.46251 -19.60627 -19.02509 -18.78401 -18.15828 -17.85083 -17.61765 -17.33624 -16.91402 -16.68111 -16.42745 -16.07653 -15.77714 -15.61857 -15.01049 -14.59551 -14.52909 -14.30290 -14.19398 -14.04605 -13.80885 -13.44555 -13.24358 -13.14883 -13.08702 -12.94011 -12.76121 -12.66446 -12.42893 -12.40117 -12.15115 -11.89922 -11.74456 -11.55623 -11.46449 -11.33251 -11.15757 -10.39806 -10.05668 -9.89817 -8.70809 -8.39420 -6.16750 -0.39632 0.26409 1.17778 1.26777 1.40122 1.43250 1.46619 1.53119 1.62204 1.87891 2.25394 2.76027 2.94746 3.26821 3.43506 3.58026 3.77760 3.78603 3.82662 3.94836 4.06504 4.10901 4.23358 4.26119 4.26313 4.28784 4.39930 4.47141 4.49784 4.53750 4.63057 4.63877 4.76600 4.96588 4.96826 5.08992 5.19136 5.25284 5.37640 5.40839 5.43820 5.45698 5.86506 6.15877 6.56944 6.69553 7.02422 8.69747 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.001946 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.796913 B =14385.077932 C =15028.729459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.502 3.498 4 O -0.532 6.532 5 C -0.139 4.139 6 C -0.067 4.067 7 C -0.127 4.127 8 C -0.076 4.076 9 C -0.124 4.124 10 C -0.032 4.032 11 C -0.080 4.080 12 C 0.478 3.522 13 O -0.541 6.541 14 O -0.358 6.358 15 C 0.083 3.917 16 C -0.085 4.085 17 C -0.091 4.091 18 S -0.183 6.183 19 C -0.542 4.542 20 H 0.074 0.926 21 C 0.015 3.985 22 N -0.906 5.906 23 Si 0.995 3.005 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.264 1.264 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.472 -25.580 15.334 34.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.349 3.651 4 O -0.423 6.423 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.145 4.145 8 C -0.094 4.094 9 C -0.141 4.141 10 C -0.032 4.032 11 C -0.116 4.116 12 C 0.323 3.677 13 O -0.431 6.431 14 O -0.275 6.275 15 C 0.007 3.993 16 C -0.123 4.123 17 C -0.240 4.240 18 S 0.046 5.954 19 C -0.690 4.690 20 H 0.092 0.908 21 C -0.190 4.190 22 N -0.542 5.542 23 Si 0.817 3.183 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.189 1.189 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.883 -24.650 15.934 33.861 hybrid contribution -0.743 -0.304 -2.267 2.405 sum 16.140 -24.954 13.667 32.711 Atomic orbital electron populations 1.23558 0.74397 1.05909 1.02385 1.86508 1.25076 1.31751 1.83878 1.21666 0.89941 0.81567 0.71931 1.90804 1.67782 1.36507 1.47255 1.19084 0.88408 0.95895 1.10668 1.21668 0.94954 0.97368 0.94494 1.21609 0.93682 0.99755 0.99445 1.21874 1.02121 0.91582 0.93789 1.21374 0.91301 1.01196 1.00265 1.19514 0.94777 0.91717 0.97213 1.20582 1.02391 0.97055 0.91611 1.23853 0.74099 0.77198 0.92527 1.90624 1.56330 1.53743 1.42433 1.86449 1.63478 1.43408 1.34169 1.22961 0.98631 0.97090 0.80568 1.21098 0.99934 0.95960 0.95318 1.23056 1.01633 0.99912 0.99373 1.84625 1.66088 1.30595 1.14106 1.23014 1.38894 1.14722 0.92344 0.90830 1.26085 0.94492 0.94185 1.04216 1.70140 1.34039 1.13470 1.36566 0.85047 0.78667 0.78144 0.76437 1.19013 1.19814 1.18884 0.91509 0.92938 0.84484 0.83271 0.81835 0.81732 0.82659 0.83744 0.85365 0.90661 0.92027 0.90635 0.89859 0.91172 0.91694 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -7.21 9.83 -56.17 -0.55 -7.76 16 3 C 0.50 12.30 7.82 70.33 0.55 12.85 16 4 O -0.53 -15.70 12.05 19.94 0.24 -15.46 16 5 C -0.14 -2.90 5.77 -20.10 -0.12 -3.02 16 6 C -0.07 -0.98 9.62 22.53 0.22 -0.77 16 7 C -0.13 -1.24 10.03 22.23 0.22 -1.02 16 8 C -0.08 -0.71 10.04 22.33 0.22 -0.48 16 9 C -0.12 -1.65 9.66 22.23 0.21 -1.43 16 10 C -0.03 -0.62 4.46 -19.60 -0.09 -0.71 16 11 C -0.08 -1.67 5.24 29.10 0.15 -1.51 16 12 C 0.48 14.13 6.46 71.24 0.46 14.59 16 13 O -0.54 -18.82 15.70 21.96 0.34 -18.47 16 14 O -0.36 -11.23 10.22 -51.40 -0.53 -11.76 16 15 C 0.08 2.67 5.47 71.98 0.39 3.06 16 16 C -0.08 -2.96 5.60 30.60 0.17 -2.79 16 17 C -0.09 -3.80 5.67 71.98 0.41 -3.40 16 18 S -0.18 -9.92 21.44 -56.49 -1.21 -11.13 16 19 C -0.54 -31.81 9.50 67.95 0.65 -31.16 16 20 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 21 C 0.02 0.88 5.49 84.86 0.47 1.35 16 22 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 23 Si 1.00 44.45 29.55 68.60 2.03 46.48 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.14 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.15 1.73 7.63 -2.91 -0.02 1.71 16 31 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 32 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 33 H 0.16 1.31 8.03 -2.91 -0.02 1.29 16 34 H 0.14 1.93 8.00 -2.38 -0.02 1.91 16 35 H 0.13 2.85 6.09 -2.39 -0.01 2.84 16 36 H 0.08 2.32 8.13 -2.39 -0.02 2.30 16 37 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.07 2.85 8.14 -2.40 -0.02 2.83 16 41 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -79.05 379.95 6.76 -72.29 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.03 Total: 13.45 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.12 Total: -12.76 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.29 Total: -54.87 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.49 Total: -53.44 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.21 Total: -11.13 kcal Total: -79.05 6.76 -72.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805522310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.666 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds