Wall clock time and date at job start Tue Mar 31 2020 20:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86801 * 119.99592 * 2 1 4 4 H 1.48500 * 109.47393 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.47436 * 30.00298 * 3 2 1 6 6 H 1.48506 * 109.47128 * 150.00106 * 3 2 1 7 7 C 1.38750 * 120.00631 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00535 * 185.09689 * 7 2 1 9 9 O 1.34920 * 119.99887 * 5.10482 * 7 2 1 10 10 C 1.34306 * 117.00318 * 185.13942 * 9 7 2 11 11 O 1.21216 * 119.99861 * 354.40194 * 10 9 7 12 12 C 1.50703 * 120.00233 * 174.39851 * 10 9 7 13 13 S 1.81397 * 109.46825 * 49.51572 * 12 10 9 14 14 O 1.42109 * 110.54330 * 310.88806 * 13 12 10 15 15 O 1.42098 * 110.54236 * 174.14230 * 13 12 10 16 16 C 1.76195 * 104.45492 * 62.51569 * 13 12 10 17 17 C 1.38236 * 120.00025 * 86.96344 * 16 13 12 18 18 C 1.38234 * 120.00323 * 179.97438 * 17 16 13 19 19 C 1.38237 * 119.99573 * 0.02562 * 18 17 16 20 20 C 1.38234 * 120.00124 * 359.95222 * 19 18 17 21 21 C 1.38234 * 120.00271 * 0.02562 * 20 19 18 22 22 C 1.53005 * 109.46893 * 169.51106 * 12 10 9 23 23 C 1.52996 * 109.47185 * 60.00374 * 22 12 10 24 24 C 1.53000 * 109.47224 * 59.99750 * 23 22 12 25 25 C 1.53005 * 109.47244 * 300.00214 * 24 23 22 26 26 C 1.52996 * 109.47185 * 59.99761 * 25 24 23 27 27 H 0.96999 * 120.00495 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99864 * 0.26551 * 17 16 13 29 29 H 1.07991 * 120.00275 * 179.97438 * 18 17 16 30 30 H 1.08005 * 120.00012 * 179.97438 * 19 18 17 31 31 H 1.08005 * 120.00124 * 180.02562 * 20 19 18 32 32 H 1.07991 * 120.00245 * 179.97438 * 21 20 19 33 33 H 1.09005 * 109.46494 * 180.02562 * 22 12 10 34 34 H 1.09002 * 109.47231 * 299.99800 * 22 12 10 35 35 H 1.08997 * 109.47133 * 300.00032 * 23 22 12 36 36 H 1.08995 * 109.47328 * 179.97438 * 23 22 12 37 37 H 1.08997 * 109.47535 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.47331 * 60.00022 * 24 23 22 39 39 H 1.09000 * 109.46799 * 300.00133 * 25 24 23 40 40 H 1.09001 * 109.47466 * 179.97438 * 25 24 23 41 41 H 1.08995 * 109.47328 * 180.02562 * 26 25 24 42 42 H 1.08997 * 109.47133 * 59.99968 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2015 0.0005 8 1 3.0851 -1.2033 0.0836 9 8 1.3378 -2.3678 -0.1029 10 6 2.0566 -3.4966 0.0104 11 8 3.2645 -3.4399 0.0952 12 6 1.3616 -4.8336 0.0322 13 16 0.1950 -4.9312 -1.3534 14 8 -0.6216 -3.7691 -1.4006 15 8 -0.3745 -6.2305 -1.4351 16 6 1.2075 -4.8094 -2.7902 17 6 1.7755 -5.9464 -3.3339 18 6 2.5695 -5.8510 -4.4615 19 6 2.7958 -4.6184 -5.0451 20 6 2.2273 -3.4815 -4.5017 21 6 1.4330 -3.5770 -3.3744 22 6 2.3999 -5.9502 -0.0956 23 6 3.3839 -5.8679 1.0730 24 6 2.6242 -6.0263 2.3916 25 6 1.5859 -4.9097 2.5194 26 6 0.6019 -4.9921 1.3508 27 1 -0.4851 0.8400 0.0004 28 1 1.5952 -6.9099 -2.8804 29 1 3.0136 -6.7391 -4.8859 30 1 3.4164 -4.5437 -5.9258 31 1 2.4038 -2.5186 -4.9579 32 1 0.9893 -2.6888 -2.9497 33 1 1.8970 -6.9172 -0.0803 34 1 2.9410 -5.8373 -1.0350 35 1 3.8865 -4.9008 1.0573 36 1 4.1232 -6.6635 0.9822 37 1 3.3251 -5.9672 3.2242 38 1 2.1215 -6.9933 2.4074 39 1 2.0887 -3.9427 2.5036 40 1 1.0444 -5.0228 3.4586 41 1 -0.1374 -4.1964 1.4416 42 1 0.0993 -5.9591 1.3665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808612536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:44 Heat of formation + Delta-G solvation = -120.163262 kcal Electronic energy + Delta-G solvation = -29421.866768 eV Core-core repulsion = 25459.799248 eV Total energy + Delta-G solvation = -3962.067519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.99725 -38.89903 -37.57277 -36.62320 -35.53880 -35.01532 -32.29858 -31.46097 -31.10361 -30.85955 -30.38628 -25.76387 -23.69180 -23.10390 -22.60906 -22.32623 -21.21899 -19.24582 -18.70859 -17.94564 -17.64747 -16.94248 -16.06039 -15.75700 -15.51396 -15.00345 -14.77248 -14.46296 -14.38630 -14.23737 -13.96762 -13.71533 -13.36374 -13.32177 -12.91576 -12.71593 -12.46394 -12.06423 -12.01340 -11.99572 -11.65764 -11.57041 -11.51436 -11.40017 -11.14675 -11.07260 -10.85538 -10.69058 -10.47631 -10.44348 -10.26314 -10.05212 -9.90558 -9.63077 -9.21557 -8.86110 -8.78357 -8.63073 -6.44367 -4.14641 0.30073 1.02775 1.46584 2.95226 3.11916 3.14866 3.19474 3.40266 3.59224 3.72949 4.14442 4.20873 4.41691 4.72003 4.78456 4.97337 5.00361 5.09429 5.13209 5.19163 5.35122 5.38525 5.47569 5.50097 5.64179 5.66972 5.73265 5.79039 5.82958 6.00466 6.07422 6.10015 6.29440 6.31106 6.36026 6.39337 6.40141 6.50513 6.52649 6.59304 6.91943 6.99331 7.33435 7.86378 8.57937 8.99759 9.69948 10.69830 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.006693 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.329729 B = 4182.420897 C = 5530.747107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.048 3.952 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.387 4.387 8 H 0.098 0.902 9 O -0.189 6.189 10 C 0.409 3.591 11 O -0.526 6.526 12 C -0.511 4.511 13 S 2.490 3.510 14 O -0.892 6.892 15 O -0.943 6.943 16 C -0.654 4.654 17 C -0.026 4.026 18 C -0.149 4.149 19 C -0.069 4.069 20 C -0.140 4.140 21 C -0.004 4.004 22 C -0.087 4.087 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.100 4.100 27 H 0.272 0.728 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -10.847 -3.377 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.159 4.159 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.463 4.463 8 H 0.116 0.884 9 O -0.095 6.095 10 C 0.253 3.747 11 O -0.423 6.423 12 C -0.601 4.601 13 S 2.670 3.330 14 O -0.889 6.889 15 O -0.941 6.941 16 C -0.741 4.741 17 C -0.045 4.045 18 C -0.168 4.168 19 C -0.087 4.087 20 C -0.159 4.159 21 C -0.023 4.023 22 C -0.125 4.125 23 C -0.170 4.170 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.138 4.138 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.169 -10.749 -3.379 11.705 hybrid contribution 1.263 0.876 -0.202 1.550 sum 4.432 -9.873 -3.581 11.399 Atomic orbital electron populations 1.70057 1.05857 1.27844 1.43630 1.25361 0.95757 0.98759 0.96045 0.85756 0.79135 0.79963 0.78849 1.19769 1.20241 1.19089 1.21244 0.92623 0.79533 1.52891 0.88433 1.83987 1.39719 1.12784 1.72990 1.21455 0.86635 0.85223 0.81337 1.90413 1.14863 1.86585 1.50447 1.29577 1.13442 1.00409 1.16682 1.06053 0.76109 0.75021 0.75844 1.93699 1.62049 1.48372 1.84784 1.93512 1.74190 1.40312 1.86037 1.30552 1.20954 1.00088 1.22536 1.20899 0.92147 0.96855 0.94562 1.21184 1.00501 0.97963 0.97108 1.21438 0.96258 0.92801 0.98201 1.21323 0.98496 0.99025 0.97012 1.21243 0.91669 0.96492 0.92893 1.21302 0.95560 0.94057 1.01587 1.21864 0.97277 1.05294 0.92546 1.21532 0.97842 0.98121 0.97915 1.21452 0.96583 1.00452 0.96525 1.21429 0.98060 1.03661 0.90675 0.91824 0.84558 0.85363 0.85564 0.85034 0.83036 0.90130 0.90419 0.87081 0.92389 0.92024 0.92421 0.90744 0.91280 0.89035 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.95 13.67 55.48 0.76 -23.19 16 2 C 0.05 1.29 5.49 -17.53 -0.10 1.20 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.79 9.63 30.92 0.30 -10.49 16 8 H 0.10 2.71 6.87 -52.48 -0.36 2.35 16 9 O -0.19 -5.09 8.46 -26.25 -0.22 -5.31 16 10 C 0.41 9.44 4.88 36.01 0.18 9.61 16 11 O -0.53 -12.71 12.59 -19.06 -0.24 -12.95 16 12 C -0.51 -9.59 0.67 -91.77 -0.06 -9.65 16 13 S 2.49 48.51 4.14 -107.50 -0.44 48.07 16 14 O -0.89 -20.97 15.84 -64.29 -1.02 -21.99 16 15 O -0.94 -17.96 17.17 -57.54 -0.99 -18.95 16 16 C -0.65 -11.78 4.77 -39.58 -0.19 -11.97 16 17 C -0.03 -0.38 8.21 -39.58 -0.33 -0.71 16 18 C -0.15 -1.89 10.05 -39.58 -0.40 -2.29 16 19 C -0.07 -0.88 10.05 -39.58 -0.40 -1.28 16 20 C -0.14 -2.13 10.05 -39.58 -0.40 -2.52 16 21 C 0.00 -0.08 9.47 -39.58 -0.38 -0.45 16 22 C -0.09 -1.36 4.15 -26.73 -0.11 -1.48 16 23 C -0.13 -2.02 5.63 -26.73 -0.15 -2.17 16 24 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 25 C -0.11 -1.76 5.70 -26.73 -0.15 -1.91 16 26 C -0.10 -1.69 4.73 -26.73 -0.13 -1.81 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.14 1.73 7.65 -52.48 -0.40 1.33 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 31 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 32 H 0.15 3.16 7.50 -52.49 -0.39 2.76 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.20 6.48 -51.93 -0.34 0.86 16 35 H 0.11 2.06 5.15 -51.93 -0.27 1.79 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.39 7.22 -51.93 -0.37 1.02 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -33.83 352.50 -9.83 -43.66 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.50 Total: 7.58 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: -2.46 Total: -37.68 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.76 Total: -23.19 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -2.47 Total: -59.20 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 48.51 SS G_CDS: -0.44 Total: 48.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.83 -9.83 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808612536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.507 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds