Wall clock time and date at job start Tue Mar 31 2020 20:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86801 * 119.99592 * 2 1 4 4 H 1.48500 * 109.47393 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.47436 * 30.00298 * 3 2 1 6 6 H 1.48506 * 109.47128 * 150.00106 * 3 2 1 7 7 C 1.38750 * 120.00631 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00535 * 185.09689 * 7 2 1 9 9 O 1.34920 * 119.99887 * 5.10482 * 7 2 1 10 10 C 1.34306 * 117.00318 * 185.13942 * 9 7 2 11 11 O 1.21216 * 119.99861 * 354.40194 * 10 9 7 12 12 C 1.50703 * 120.00233 * 174.39851 * 10 9 7 13 13 S 1.81397 * 109.46825 * 49.51572 * 12 10 9 14 14 O 1.42109 * 110.54330 * 310.88806 * 13 12 10 15 15 O 1.42098 * 110.54236 * 174.14230 * 13 12 10 16 16 C 1.76195 * 104.45492 * 62.51569 * 13 12 10 17 17 C 1.38236 * 120.00025 * 86.96344 * 16 13 12 18 18 C 1.38234 * 120.00323 * 179.97438 * 17 16 13 19 19 C 1.38237 * 119.99573 * 0.02562 * 18 17 16 20 20 C 1.38234 * 120.00124 * 359.95222 * 19 18 17 21 21 C 1.38234 * 120.00271 * 0.02562 * 20 19 18 22 22 C 1.53005 * 109.46893 * 169.51106 * 12 10 9 23 23 C 1.52996 * 109.47185 * 60.00374 * 22 12 10 24 24 C 1.53000 * 109.47224 * 59.99750 * 23 22 12 25 25 C 1.53005 * 109.47244 * 300.00214 * 24 23 22 26 26 C 1.52996 * 109.47185 * 59.99761 * 25 24 23 27 27 H 0.96999 * 120.00495 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99864 * 0.26551 * 17 16 13 29 29 H 1.07991 * 120.00275 * 179.97438 * 18 17 16 30 30 H 1.08005 * 120.00012 * 179.97438 * 19 18 17 31 31 H 1.08005 * 120.00124 * 180.02562 * 20 19 18 32 32 H 1.07991 * 120.00245 * 179.97438 * 21 20 19 33 33 H 1.09005 * 109.46494 * 180.02562 * 22 12 10 34 34 H 1.09002 * 109.47231 * 299.99800 * 22 12 10 35 35 H 1.08997 * 109.47133 * 300.00032 * 23 22 12 36 36 H 1.08995 * 109.47328 * 179.97438 * 23 22 12 37 37 H 1.08997 * 109.47535 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.47331 * 60.00022 * 24 23 22 39 39 H 1.09000 * 109.46799 * 300.00133 * 25 24 23 40 40 H 1.09001 * 109.47466 * 179.97438 * 25 24 23 41 41 H 1.08995 * 109.47328 * 180.02562 * 26 25 24 42 42 H 1.08997 * 109.47133 * 59.99968 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2015 0.0005 8 1 3.0851 -1.2033 0.0836 9 8 1.3378 -2.3678 -0.1029 10 6 2.0566 -3.4966 0.0104 11 8 3.2645 -3.4399 0.0952 12 6 1.3616 -4.8336 0.0322 13 16 0.1950 -4.9312 -1.3534 14 8 -0.6216 -3.7691 -1.4006 15 8 -0.3745 -6.2305 -1.4351 16 6 1.2075 -4.8094 -2.7902 17 6 1.7755 -5.9464 -3.3339 18 6 2.5695 -5.8510 -4.4615 19 6 2.7958 -4.6184 -5.0451 20 6 2.2273 -3.4815 -4.5017 21 6 1.4330 -3.5770 -3.3744 22 6 2.3999 -5.9502 -0.0956 23 6 3.3839 -5.8679 1.0730 24 6 2.6242 -6.0263 2.3916 25 6 1.5859 -4.9097 2.5194 26 6 0.6019 -4.9921 1.3508 27 1 -0.4851 0.8400 0.0004 28 1 1.5952 -6.9099 -2.8804 29 1 3.0136 -6.7391 -4.8859 30 1 3.4164 -4.5437 -5.9258 31 1 2.4038 -2.5186 -4.9579 32 1 0.9893 -2.6888 -2.9497 33 1 1.8970 -6.9172 -0.0803 34 1 2.9410 -5.8373 -1.0350 35 1 3.8865 -4.9008 1.0573 36 1 4.1232 -6.6635 0.9822 37 1 3.3251 -5.9672 3.2242 38 1 2.1215 -6.9933 2.4074 39 1 2.0887 -3.9427 2.5036 40 1 1.0444 -5.0228 3.4586 41 1 -0.1374 -4.1964 1.4416 42 1 0.0993 -5.9591 1.3665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808612536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:43 Heat of formation + Delta-G solvation = -142.092797 kcal Electronic energy + Delta-G solvation = -29422.817704 eV Core-core repulsion = 25459.799248 eV Total energy + Delta-G solvation = -3963.018455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72271 -40.07351 -39.17297 -38.22495 -37.17487 -36.89946 -34.34642 -32.75075 -32.40523 -32.03145 -31.64329 -27.75517 -25.22843 -24.38242 -23.79934 -23.56903 -22.75873 -20.73257 -20.27987 -19.88952 -19.12679 -18.52050 -17.70085 -17.11321 -16.96039 -16.60326 -16.48531 -16.13817 -15.71197 -15.52775 -15.41215 -15.17057 -14.77364 -14.53202 -14.48483 -14.01319 -13.81292 -13.71541 -13.36507 -13.26755 -13.24143 -13.18132 -13.15497 -13.05703 -12.68977 -12.38136 -12.24014 -12.18905 -12.15863 -11.95230 -11.78868 -11.75323 -11.25378 -10.99984 -10.68545 -10.53881 -10.37125 -10.04244 -8.50041 -6.31986 -1.20081 -0.19906 0.29100 1.21548 1.30728 1.47751 1.50650 1.72950 1.97951 2.32662 2.43437 2.75545 2.95736 2.98980 3.34213 3.41671 3.81166 3.93161 3.94177 4.06049 4.08511 4.18590 4.27073 4.36464 4.39539 4.43448 4.48703 4.55020 4.68223 4.74965 4.82262 4.90007 4.94981 5.08844 5.13613 5.15803 5.21606 5.25609 5.25779 5.28348 5.35334 5.62419 5.85568 5.86979 6.62400 6.91434 7.70675 8.68069 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.006693 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.329729 B = 4182.420897 C = 5530.747107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.001 4.001 3 Si 1.010 2.990 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.418 4.418 8 H 0.087 0.913 9 O -0.221 6.221 10 C 0.419 3.581 11 O -0.538 6.538 12 C -0.506 4.506 13 S 2.493 3.507 14 O -0.950 6.950 15 O -0.939 6.939 16 C -0.670 4.670 17 C -0.032 4.032 18 C -0.136 4.136 19 C -0.056 4.056 20 C -0.150 4.150 21 C -0.044 4.044 22 C -0.091 4.091 23 C -0.133 4.133 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.110 4.110 27 H 0.277 0.723 28 H 0.163 0.837 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.145 0.855 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.156 -14.040 -4.411 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.203 4.203 3 Si 0.829 3.171 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.105 0.895 9 O -0.129 6.129 10 C 0.264 3.736 11 O -0.435 6.435 12 C -0.596 4.596 13 S 2.677 3.323 14 O -0.947 6.947 15 O -0.936 6.936 16 C -0.760 4.760 17 C -0.051 4.051 18 C -0.154 4.154 19 C -0.074 4.074 20 C -0.169 4.169 21 C -0.063 4.063 22 C -0.129 4.129 23 C -0.171 4.171 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.148 4.148 27 H 0.087 0.913 28 H 0.180 0.820 29 H 0.195 0.805 30 H 0.190 0.810 31 H 0.162 0.838 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.048 0.952 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.333 -13.953 -4.389 15.569 hybrid contribution 0.679 1.672 0.049 1.805 sum 6.013 -12.281 -4.340 14.346 Atomic orbital electron populations 1.70176 1.07721 1.29174 1.45384 1.26523 0.96683 1.02269 0.94802 0.84738 0.77862 0.74920 0.79576 1.18433 1.18698 1.18434 1.21421 0.92405 0.80837 1.54737 0.89520 1.84028 1.40669 1.13639 1.74549 1.22286 0.86661 0.86006 0.78674 1.90409 1.15648 1.87260 1.50176 1.29695 1.14065 0.98529 1.17353 1.05512 0.76313 0.74062 0.76400 1.93638 1.64754 1.50514 1.85795 1.93495 1.74640 1.39253 1.86244 1.30187 1.22490 1.01186 1.22163 1.21344 0.91872 0.96496 0.95419 1.21788 0.98526 0.99644 0.95471 1.21979 0.94966 0.91647 0.98767 1.21589 0.98022 1.01213 0.96062 1.21049 0.94356 0.95569 0.95347 1.21557 0.95079 0.94184 1.02071 1.21829 0.97800 1.04233 0.93268 1.21560 0.97401 0.98491 0.97476 1.21495 0.97020 0.99366 0.97220 1.21647 0.97982 1.04935 0.90257 0.91338 0.81990 0.80509 0.81006 0.83751 0.87531 0.86157 0.90220 0.91139 0.89075 0.90625 0.88960 0.95154 0.88616 0.91635 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.21 13.67 21.62 0.30 -53.91 16 2 C 0.00 -0.05 5.49 84.87 0.47 0.42 16 3 Si 1.01 43.69 29.55 68.60 2.03 45.72 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.42 -25.16 9.63 67.94 0.65 -24.50 16 8 H 0.09 5.20 6.87 -2.91 -0.02 5.18 16 9 O -0.22 -12.99 8.46 20.23 0.17 -12.81 16 10 C 0.42 20.53 4.88 71.24 0.35 20.88 16 11 O -0.54 -27.45 12.59 20.76 0.26 -27.19 16 12 C -0.51 -19.28 0.67 -11.54 -0.01 -19.29 16 13 S 2.49 100.45 4.14 -56.49 -0.23 100.22 16 14 O -0.95 -48.77 15.84 -121.19 -1.92 -50.69 16 15 O -0.94 -34.97 17.17 -127.65 -2.19 -37.16 16 16 C -0.67 -24.48 4.77 22.27 0.11 -24.38 16 17 C -0.03 -0.88 8.21 22.27 0.18 -0.70 16 18 C -0.14 -2.82 10.05 22.27 0.22 -2.60 16 19 C -0.06 -1.22 10.05 22.27 0.22 -1.00 16 20 C -0.15 -4.53 10.05 22.27 0.22 -4.31 16 21 C -0.04 -1.74 9.47 22.27 0.21 -1.53 16 22 C -0.09 -2.66 4.15 30.59 0.13 -2.53 16 23 C -0.13 -3.77 5.63 30.59 0.17 -3.60 16 24 C -0.11 -2.74 5.92 30.60 0.18 -2.56 16 25 C -0.11 -3.49 5.70 30.59 0.17 -3.32 16 26 C -0.11 -3.74 4.73 30.59 0.14 -3.59 16 27 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.16 3.45 7.65 -2.91 -0.02 3.43 16 29 H 0.18 2.02 8.06 -2.92 -0.02 2.00 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.11 5.08 7.50 -2.92 -0.02 5.05 16 33 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.08 2.29 6.48 -2.39 -0.02 2.27 16 35 H 0.07 2.61 5.15 -2.39 -0.01 2.60 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.03 1.18 7.22 -2.39 -0.02 1.17 16 40 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -83.08 352.50 2.88 -80.20 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.03 Total: 28.23 kcal Atomic # 6 Polarization: -76.04 SS G_CDS: 3.43 Total: -72.60 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.30 Total: -53.91 kcal Atomic # 8 Polarization: -124.18 SS G_CDS: -3.68 Total: -127.86 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 100.45 SS G_CDS: -0.23 Total: 100.22 kcal Total: -83.08 2.88 -80.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808612536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.895 kcal (2) G-P(sol) polarization free energy of solvation -83.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds