Wall clock time and date at job start Tue Mar 31 2020 21:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 110.54314 * 2 1 4 4 O 1.42096 * 110.54015 * 223.24828 * 2 1 3 5 5 C 1.76197 * 104.45097 * 111.62635 * 2 1 3 6 6 C 1.38258 * 120.00302 * 248.21031 * 5 2 1 7 7 C 1.38211 * 120.00578 * 179.71979 * 6 5 2 8 8 C 1.38256 * 119.99668 * 0.27420 * 7 6 5 9 9 C 1.38222 * 120.00136 * 359.97438 * 8 7 6 10 10 C 1.38213 * 120.00357 * 68.39002 * 5 2 1 11 11 C 1.50703 * 119.99840 * 0.04978 * 10 5 2 12 12 C 1.50701 * 109.46974 * 88.85986 * 11 10 5 13 13 O 1.20823 * 120.00473 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99701 * 180.02562 * 12 11 10 15 15 C 1.45200 * 116.99944 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47238 * 179.97438 * 15 14 12 17 17 C 1.50699 * 115.55184 * 58.56281 * 16 15 14 18 18 H 1.08007 * 119.99839 * 264.69337 * 17 16 15 19 19 C 1.37879 * 120.00074 * 84.68239 * 17 16 15 20 20 N 1.31516 * 119.99831 * 1.97058 * 19 17 16 21 21 Si 1.86799 * 120.00104 * 181.96831 * 19 17 16 22 22 H 1.48507 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47211 * 120.00000 * 21 19 17 24 24 H 1.48499 * 109.47410 * 240.00443 * 21 19 17 25 25 C 1.53001 * 117.50085 * 272.89151 * 16 15 14 26 26 C 1.53002 * 117.50287 * 204.23024 * 16 15 14 27 27 H 1.09006 * 109.46535 * 315.35687 * 1 2 3 28 28 H 1.08995 * 109.47079 * 75.35324 * 1 2 3 29 29 H 1.08998 * 109.47282 * 195.36153 * 1 2 3 30 30 H 1.08000 * 119.99541 * 359.97438 * 6 5 2 31 31 H 1.07994 * 119.99932 * 180.25068 * 7 6 5 32 32 H 1.07997 * 120.00017 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99767 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47291 * 208.85758 * 11 10 5 35 35 H 1.09004 * 109.46997 * 328.86420 * 11 10 5 36 36 H 1.08998 * 109.47122 * 299.99632 * 15 14 12 37 37 H 1.09007 * 109.47247 * 60.00019 * 15 14 12 38 38 H 0.97001 * 119.99565 * 180.02562 * 20 19 17 39 39 H 1.08992 * 117.49662 * 359.97438 * 25 16 15 40 40 H 1.08999 * 117.49699 * 145.02088 * 25 16 15 41 41 H 1.08996 * 117.50146 * 214.98338 * 26 16 15 42 42 H 1.09005 * 117.49594 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.8566 0.1988 2.5151 7 6 3.1963 -0.2929 3.7614 8 6 2.9383 -1.6139 4.0770 9 6 2.3402 -2.4428 3.1465 10 6 1.9993 -1.9505 1.9004 11 6 1.3469 -2.8541 0.8861 12 6 2.4077 -3.4985 0.0315 13 8 3.5739 -3.2493 0.2258 14 8 2.0570 -4.3487 -0.9463 15 6 3.1315 -4.9324 -1.7292 16 6 2.5421 -5.8678 -2.7867 17 6 1.5748 -5.2311 -3.7511 18 1 0.5124 -5.2826 -3.5633 19 6 2.0459 -4.5827 -4.8730 20 7 3.3370 -4.5532 -5.1218 21 14 0.8505 -3.7461 -6.0394 22 1 -0.5360 -3.9222 -5.5375 23 1 1.1677 -2.2975 -6.1183 24 1 0.9695 -4.3531 -7.3895 25 6 2.2812 -7.3194 -2.3796 26 6 3.4404 -6.9848 -3.3216 27 1 -0.3632 0.7312 0.7222 28 1 -0.3633 0.2598 -0.9942 29 1 -0.3634 -0.9909 0.2722 30 1 3.0584 1.2307 2.2684 31 1 3.6635 0.3548 4.4883 32 1 3.2041 -1.9983 5.0507 33 1 2.1391 -3.4749 3.3931 34 1 0.7765 -3.6268 1.4014 35 1 0.6780 -2.2687 0.2550 36 1 3.6962 -4.1393 -2.2193 37 1 3.7935 -5.4977 -1.0731 38 1 3.6685 -4.0967 -5.9109 39 1 2.5299 -7.6080 -1.3584 40 1 1.4102 -7.8139 -2.8095 41 1 3.3316 -7.2594 -4.3708 42 1 4.4516 -7.0531 -2.9204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810598993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:45 Heat of formation + Delta-G solvation = -90.130430 kcal Electronic energy + Delta-G solvation = -27787.802183 eV Core-core repulsion = 23827.036985 eV Total energy + Delta-G solvation = -3960.765198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17625 -39.02443 -37.18725 -36.63119 -35.90388 -35.09102 -33.31560 -31.85801 -31.47082 -29.72663 -28.46735 -26.44637 -25.10464 -23.44766 -22.46942 -21.11273 -20.23263 -19.17921 -19.06823 -17.73202 -17.06974 -16.63327 -16.39801 -16.16251 -15.93398 -15.46043 -15.17431 -14.89699 -14.63623 -14.51083 -13.85778 -13.63715 -13.47976 -13.36530 -13.12664 -12.88392 -12.56771 -12.37389 -12.03458 -11.91605 -11.88629 -11.66929 -11.56477 -11.45429 -11.06739 -10.91038 -10.77584 -10.64735 -10.45653 -10.21949 -9.91732 -9.70015 -9.53793 -9.43079 -9.07426 -8.81971 -8.36783 -8.10441 -5.96755 -4.02083 -0.04910 0.63887 1.04959 2.76279 2.92719 3.12640 3.33879 3.41615 3.44557 3.58823 3.81085 4.08520 4.24633 4.44253 4.46977 4.58973 4.67455 4.79254 4.91196 5.02984 5.19042 5.25390 5.29548 5.33703 5.47033 5.52673 5.58221 5.74280 5.88015 6.04789 6.07690 6.12605 6.31282 6.41829 6.61085 6.62533 6.74089 6.82516 7.11499 7.38368 7.44880 7.59857 7.95304 8.44706 8.59760 8.98422 9.63291 11.12781 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.004133 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.453638 B = 6772.340861 C = 8111.880354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.483 3.517 3 O -0.941 6.941 4 O -0.906 6.906 5 C -0.643 4.643 6 C -0.022 4.022 7 C -0.141 4.141 8 C -0.066 4.066 9 C -0.124 4.124 10 C 0.026 3.974 11 C -0.108 4.108 12 C 0.473 3.527 13 O -0.507 6.507 14 O -0.333 6.333 15 C 0.119 3.881 16 C 0.036 3.964 17 C -0.485 4.485 18 H 0.063 0.937 19 C 0.069 3.931 20 N -0.881 5.881 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.285 1.285 25 C -0.209 4.209 26 C -0.142 4.142 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 8.063 18.372 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.661 3.339 3 O -0.938 6.938 4 O -0.903 6.903 5 C -0.729 4.729 6 C -0.040 4.040 7 C -0.160 4.160 8 C -0.084 4.084 9 C -0.142 4.142 10 C 0.025 3.975 11 C -0.145 4.145 12 C 0.315 3.685 13 O -0.395 6.395 14 O -0.248 6.248 15 C 0.046 3.954 16 C 0.036 3.964 17 C -0.523 4.523 18 H 0.081 0.919 19 C -0.134 4.134 20 N -0.517 5.517 21 Si 0.718 3.282 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.211 1.211 25 C -0.246 4.246 26 C -0.179 4.179 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.265 8.425 17.605 20.214 hybrid contribution -0.763 0.227 0.031 0.797 sum -6.028 8.651 17.635 20.547 Atomic orbital electron populations 1.30420 1.26000 1.12123 1.12381 1.05818 0.78139 0.75059 0.74837 1.93547 1.77443 1.36712 1.86108 1.93759 1.76232 1.60452 1.59841 1.30410 1.15967 1.03106 1.23442 1.20950 0.91756 0.99449 0.91890 1.21285 1.01465 0.96138 0.97068 1.21416 0.94263 0.93632 0.99053 1.21129 0.99771 1.00195 0.93123 1.18960 0.93410 0.91261 0.93843 1.20727 0.97603 1.00176 0.96019 1.22418 0.88714 0.77542 0.79815 1.90612 1.20351 1.59698 1.68866 1.86450 1.41673 1.54416 1.42266 1.22829 0.86052 0.96484 0.90042 1.18797 0.98594 0.84877 0.94143 1.20367 0.92085 1.34840 1.05011 0.91928 1.24997 0.95106 0.95763 0.97523 1.69999 1.12222 1.42424 1.27101 0.86567 0.81460 0.79532 0.80656 1.19624 1.20873 1.21087 1.23035 1.00687 1.03129 0.97726 1.22510 0.92603 1.04474 0.98330 0.84857 0.84388 0.84690 0.83725 0.85065 0.85152 0.84940 0.85647 0.87759 0.90613 0.94537 0.93033 0.91716 0.90150 0.89246 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.32 10.43 101.05 1.05 -4.27 16 2 S 2.48 33.38 5.15 -107.50 -0.55 32.82 16 3 O -0.94 -14.30 16.75 -57.54 -0.96 -15.27 16 4 O -0.91 -17.18 14.35 -62.22 -0.89 -18.08 16 5 C -0.64 -8.28 5.59 -39.58 -0.22 -8.51 16 6 C -0.02 -0.25 9.50 -39.58 -0.38 -0.62 16 7 C -0.14 -1.34 10.05 -39.58 -0.40 -1.74 16 8 C -0.07 -0.61 10.05 -39.58 -0.40 -1.01 16 9 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 10 C 0.03 0.34 4.36 -104.62 -0.46 -0.12 16 11 C -0.11 -1.46 5.20 -29.03 -0.15 -1.61 16 12 C 0.47 9.46 6.09 36.01 0.22 9.68 16 13 O -0.51 -11.51 15.45 -22.56 -0.35 -11.86 16 14 O -0.33 -7.58 10.04 -39.26 -0.39 -7.97 16 15 C 0.12 2.97 5.31 37.16 0.20 3.16 16 16 C 0.04 0.93 1.70 -155.66 -0.26 0.66 16 17 C -0.49 -13.51 8.66 -34.44 -0.30 -13.81 16 18 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 19 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 20 N -0.88 -25.69 12.73 55.43 0.71 -24.98 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.21 -4.61 9.94 -26.69 -0.27 -4.87 16 26 C -0.14 -3.38 9.26 -26.69 -0.25 -3.63 16 27 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.13 0.89 5.90 -51.93 -0.31 0.59 16 30 H 0.15 1.46 7.22 -52.49 -0.38 1.08 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.21 8.08 -51.93 -0.42 0.79 16 35 H 0.10 1.20 3.93 -51.93 -0.20 1.00 16 36 H 0.08 2.12 8.13 -51.93 -0.42 1.70 16 37 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 41 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -37.92 367.10 -9.52 -47.44 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.50 Total: 2.37 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.08 Total: -26.54 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.71 Total: -24.98 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -2.60 Total: -53.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 33.38 SS G_CDS: -0.55 Total: 32.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.92 -9.52 -47.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810598993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.686 kcal (2) G-P(sol) polarization free energy of solvation -37.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds