Wall clock time and date at job start Tue Mar 31 2020 21:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 110.54314 * 2 1 4 4 O 1.42096 * 110.54015 * 223.24828 * 2 1 3 5 5 C 1.76197 * 104.45097 * 111.62635 * 2 1 3 6 6 C 1.38258 * 120.00302 * 248.21031 * 5 2 1 7 7 C 1.38211 * 120.00578 * 179.71979 * 6 5 2 8 8 C 1.38256 * 119.99668 * 0.27420 * 7 6 5 9 9 C 1.38222 * 120.00136 * 359.97438 * 8 7 6 10 10 C 1.38213 * 120.00357 * 68.39002 * 5 2 1 11 11 C 1.50703 * 119.99840 * 0.04978 * 10 5 2 12 12 C 1.50701 * 109.46974 * 88.85986 * 11 10 5 13 13 O 1.20823 * 120.00473 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99701 * 180.02562 * 12 11 10 15 15 C 1.45200 * 116.99944 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47238 * 179.97438 * 15 14 12 17 17 C 1.50699 * 115.55184 * 58.56281 * 16 15 14 18 18 H 1.08007 * 119.99839 * 264.69337 * 17 16 15 19 19 C 1.37879 * 120.00074 * 84.68239 * 17 16 15 20 20 N 1.31516 * 119.99831 * 1.97058 * 19 17 16 21 21 Si 1.86799 * 120.00104 * 181.96831 * 19 17 16 22 22 H 1.48507 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47211 * 120.00000 * 21 19 17 24 24 H 1.48499 * 109.47410 * 240.00443 * 21 19 17 25 25 C 1.53001 * 117.50085 * 272.89151 * 16 15 14 26 26 C 1.53002 * 117.50287 * 204.23024 * 16 15 14 27 27 H 1.09006 * 109.46535 * 315.35687 * 1 2 3 28 28 H 1.08995 * 109.47079 * 75.35324 * 1 2 3 29 29 H 1.08998 * 109.47282 * 195.36153 * 1 2 3 30 30 H 1.08000 * 119.99541 * 359.97438 * 6 5 2 31 31 H 1.07994 * 119.99932 * 180.25068 * 7 6 5 32 32 H 1.07997 * 120.00017 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99767 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47291 * 208.85758 * 11 10 5 35 35 H 1.09004 * 109.46997 * 328.86420 * 11 10 5 36 36 H 1.08998 * 109.47122 * 299.99632 * 15 14 12 37 37 H 1.09007 * 109.47247 * 60.00019 * 15 14 12 38 38 H 0.97001 * 119.99565 * 180.02562 * 20 19 17 39 39 H 1.08992 * 117.49662 * 359.97438 * 25 16 15 40 40 H 1.08999 * 117.49699 * 145.02088 * 25 16 15 41 41 H 1.08996 * 117.50146 * 214.98338 * 26 16 15 42 42 H 1.09005 * 117.49594 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.8566 0.1988 2.5151 7 6 3.1963 -0.2929 3.7614 8 6 2.9383 -1.6139 4.0770 9 6 2.3402 -2.4428 3.1465 10 6 1.9993 -1.9505 1.9004 11 6 1.3469 -2.8541 0.8861 12 6 2.4077 -3.4985 0.0315 13 8 3.5739 -3.2493 0.2258 14 8 2.0570 -4.3487 -0.9463 15 6 3.1315 -4.9324 -1.7292 16 6 2.5421 -5.8678 -2.7867 17 6 1.5748 -5.2311 -3.7511 18 1 0.5124 -5.2826 -3.5633 19 6 2.0459 -4.5827 -4.8730 20 7 3.3370 -4.5532 -5.1218 21 14 0.8505 -3.7461 -6.0394 22 1 -0.5360 -3.9222 -5.5375 23 1 1.1677 -2.2975 -6.1183 24 1 0.9695 -4.3531 -7.3895 25 6 2.2812 -7.3194 -2.3796 26 6 3.4404 -6.9848 -3.3216 27 1 -0.3632 0.7312 0.7222 28 1 -0.3633 0.2598 -0.9942 29 1 -0.3634 -0.9909 0.2722 30 1 3.0584 1.2307 2.2684 31 1 3.6635 0.3548 4.4883 32 1 3.2041 -1.9983 5.0507 33 1 2.1391 -3.4749 3.3931 34 1 0.7765 -3.6268 1.4014 35 1 0.6780 -2.2687 0.2550 36 1 3.6962 -4.1393 -2.2193 37 1 3.7935 -5.4977 -1.0731 38 1 3.6685 -4.0967 -5.9109 39 1 2.5299 -7.6080 -1.3584 40 1 1.4102 -7.8139 -2.8095 41 1 3.3316 -7.2594 -4.3708 42 1 4.4516 -7.0531 -2.9204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810598993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:44 Heat of formation + Delta-G solvation = -115.496696 kcal Electronic energy + Delta-G solvation = -27788.902147 eV Core-core repulsion = 23827.036985 eV Total energy + Delta-G solvation = -3961.865162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50802 -40.16846 -38.56130 -38.21595 -37.04538 -36.83255 -34.29960 -33.97774 -32.27304 -30.45359 -29.69629 -28.16586 -27.14308 -24.27205 -23.51943 -22.92702 -21.61797 -21.16600 -20.07423 -18.72646 -18.60498 -18.25717 -17.68387 -17.24333 -17.07341 -16.98343 -16.61267 -16.48003 -15.87518 -15.59946 -15.44781 -14.89436 -14.55133 -14.21405 -14.17941 -13.99264 -13.90828 -13.59645 -13.42053 -13.32298 -13.17278 -13.11911 -12.92516 -12.85234 -12.81033 -12.35689 -12.28649 -12.06345 -12.03002 -11.61707 -11.58221 -11.53231 -11.27537 -10.84751 -10.44039 -10.33047 -10.05333 -9.90952 -8.09977 -6.21034 -0.97130 -0.22329 0.22397 1.40029 1.40571 1.42806 1.53949 1.83998 1.92275 2.44364 2.52436 2.88241 3.16401 3.20103 3.29118 3.45756 3.61097 3.85541 3.94834 4.01895 4.06859 4.16872 4.18882 4.28413 4.40980 4.41752 4.49771 4.50692 4.68808 4.70812 4.85666 4.87510 4.95400 4.98925 5.09820 5.20941 5.27451 5.36518 5.48866 5.62162 5.77452 5.82458 5.87716 6.38482 6.84186 6.95973 7.47399 8.99299 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.004133 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.453638 B = 6772.340861 C = 8111.880354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.464 3.536 3 O -0.976 6.976 4 O -0.978 6.978 5 C -0.652 4.652 6 C -0.041 4.041 7 C -0.137 4.137 8 C -0.064 4.064 9 C -0.129 4.129 10 C 0.003 3.997 11 C -0.103 4.103 12 C 0.465 3.535 13 O -0.543 6.543 14 O -0.344 6.344 15 C 0.132 3.868 16 C 0.000 4.000 17 C -0.496 4.496 18 H 0.060 0.940 19 C 0.017 3.983 20 N -0.914 5.914 21 Si 0.949 3.051 22 H -0.256 1.256 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.173 4.173 26 C -0.147 4.147 27 H 0.171 0.829 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.121 0.879 36 H 0.027 0.973 37 H 0.048 0.952 38 H 0.258 0.742 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 7.865 21.115 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.650 3.350 3 O -0.974 6.974 4 O -0.976 6.976 5 C -0.740 4.740 6 C -0.060 4.060 7 C -0.155 4.155 8 C -0.081 4.081 9 C -0.147 4.147 10 C 0.002 3.998 11 C -0.140 4.140 12 C 0.309 3.691 13 O -0.433 6.433 14 O -0.259 6.259 15 C 0.058 3.942 16 C 0.000 4.000 17 C -0.534 4.534 18 H 0.078 0.922 19 C -0.182 4.182 20 N -0.552 5.552 21 Si 0.774 3.226 22 H -0.180 1.180 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.210 4.210 26 C -0.184 4.184 27 H 0.189 0.811 28 H 0.171 0.829 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.139 0.861 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.790 8.228 20.344 23.286 hybrid contribution 0.014 0.346 -0.671 0.755 sum -7.775 8.575 19.672 22.825 Atomic orbital electron populations 1.30203 1.18624 1.14819 1.14717 1.05867 0.80993 0.73600 0.74579 1.93489 1.79857 1.37454 1.86551 1.93689 1.79526 1.61877 1.62465 1.30200 1.17252 1.03763 1.22784 1.21187 0.92269 0.99751 0.92795 1.21712 1.00225 0.96905 0.96688 1.21876 0.92843 0.93231 1.00186 1.21511 0.99143 1.01510 0.92583 1.19011 0.95159 0.91054 0.94606 1.20932 0.96016 1.01352 0.95688 1.23708 0.90010 0.76265 0.79074 1.90579 1.22477 1.60495 1.69746 1.86447 1.40887 1.55464 1.43127 1.22391 0.86485 0.94991 0.90294 1.18903 0.99668 0.86485 0.94968 1.20663 0.92405 1.34815 1.05477 0.92179 1.25783 0.96628 0.96512 0.99325 1.70127 1.13962 1.43488 1.27619 0.85635 0.80118 0.77968 0.78841 1.17960 1.21399 1.20328 1.23045 0.99641 0.99697 0.98634 1.22430 0.93779 1.04328 0.97885 0.81114 0.82894 0.82531 0.83489 0.82008 0.81612 0.82810 0.81336 0.86112 0.95491 0.93355 0.93315 0.88881 0.89321 0.91183 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -8.43 10.43 113.37 1.18 -7.25 16 2 S 2.46 67.53 5.15 -56.49 -0.29 67.24 16 3 O -0.98 -31.01 16.75 -127.65 -2.14 -33.15 16 4 O -0.98 -39.44 14.35 -123.17 -1.77 -41.21 16 5 C -0.65 -16.46 5.59 22.27 0.12 -16.33 16 6 C -0.04 -0.90 9.50 22.27 0.21 -0.69 16 7 C -0.14 -2.24 10.05 22.27 0.22 -2.02 16 8 C -0.06 -0.97 10.05 22.27 0.22 -0.74 16 9 C -0.13 -2.44 9.70 22.27 0.22 -2.23 16 10 C 0.00 0.07 4.36 -19.87 -0.09 -0.02 16 11 C -0.10 -2.62 5.20 29.10 0.15 -2.47 16 12 C 0.47 18.78 6.09 71.24 0.43 19.22 16 13 O -0.54 -25.58 15.45 25.62 0.40 -25.19 16 14 O -0.34 -15.89 10.04 -51.43 -0.52 -16.40 16 15 C 0.13 6.81 5.31 71.98 0.38 7.19 16 16 C 0.00 0.01 1.70 -52.93 -0.09 -0.08 16 17 C -0.50 -27.99 8.66 25.60 0.22 -27.77 16 18 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 19 C 0.02 0.98 5.43 84.65 0.46 1.44 16 20 N -0.91 -55.31 12.73 21.45 0.27 -55.03 16 21 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 C -0.17 -7.39 9.94 30.62 0.30 -7.09 16 26 C -0.15 -7.06 9.26 30.62 0.28 -6.78 16 27 H 0.17 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.16 1.50 5.90 -2.39 -0.01 1.49 16 30 H 0.15 2.99 7.22 -2.91 -0.02 2.97 16 31 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.17 2.67 8.08 -2.39 -0.02 2.65 16 35 H 0.12 2.58 3.93 -2.39 -0.01 2.57 16 36 H 0.03 1.61 8.13 -2.39 -0.02 1.59 16 37 H 0.05 2.29 8.10 -2.38 -0.02 2.27 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.07 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.07 3.31 8.14 -2.38 -0.02 3.29 16 Total: -1.00 -88.69 367.10 3.26 -85.43 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.04 Total: 17.05 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 4.24 Total: -45.61 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.27 Total: -55.03 kcal Atomic # 8 Polarization: -111.93 SS G_CDS: -4.03 Total: -115.95 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 67.53 SS G_CDS: -0.29 Total: 67.24 kcal Total: -88.69 3.26 -85.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810598993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.070 kcal (2) G-P(sol) polarization free energy of solvation -88.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds