Wall clock time and date at job start Tue Mar 31 2020 21:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81401 * 109.46897 * 2 1 4 4 O 1.42093 * 110.54808 * 68.37429 * 3 2 1 5 5 O 1.42098 * 110.54169 * 291.62035 * 3 2 1 6 6 C 1.76205 * 104.44768 * 180.02562 * 3 2 1 7 7 C 1.38384 * 119.92907 * 89.99860 * 6 3 2 8 8 C 1.38343 * 120.30416 * 180.02562 * 7 6 3 9 9 C 1.37969 * 120.15092 * 0.02562 * 8 7 6 10 10 C 1.39609 * 119.84306 * 359.97438 * 9 8 7 11 11 C 1.47731 * 120.14474 * 180.02562 * 10 9 8 12 12 O 1.21470 * 119.99866 * 179.97438 * 11 10 9 13 13 O 1.34715 * 120.00162 * 359.97438 * 11 10 9 14 14 C 1.45193 * 116.99835 * 182.99112 * 13 11 10 15 15 C 1.50704 * 112.85392 * 294.88312 * 14 13 11 16 16 H 1.08003 * 120.00045 * 118.51818 * 15 14 13 17 17 C 1.37877 * 119.99995 * 298.52966 * 15 14 13 18 18 N 1.31517 * 119.99836 * 1.77840 * 17 15 14 19 19 Si 1.86800 * 120.00056 * 181.77920 * 17 15 14 20 20 H 1.48502 * 109.47006 * 269.99866 * 19 17 15 21 21 H 1.48504 * 109.47008 * 29.99900 * 19 17 15 22 22 H 1.48500 * 109.47305 * 149.99583 * 19 17 15 23 23 C 1.53784 * 113.61696 * 66.08425 * 14 13 11 24 24 C 1.53950 * 87.02157 * 89.22496 * 23 14 13 25 25 C 1.53781 * 113.61504 * 163.68825 * 14 13 11 26 26 C 1.37932 * 119.91917 * 270.27561 * 6 3 2 27 27 H 1.09004 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47518 * 300.00224 * 1 2 3 29 29 H 1.08998 * 109.47294 * 60.00228 * 1 2 3 30 30 H 1.08999 * 109.47035 * 239.99677 * 2 1 3 31 31 H 1.08997 * 109.46731 * 119.99258 * 2 1 3 32 32 H 1.07998 * 119.84293 * 0.02562 * 7 6 3 33 33 H 1.08003 * 119.92630 * 180.02562 * 8 7 6 34 34 H 1.08000 * 120.07799 * 179.97438 * 9 8 7 35 35 H 0.97001 * 119.99956 * 355.06001 * 18 17 15 36 36 H 1.08997 * 113.61473 * 203.74962 * 23 14 13 37 37 H 1.09005 * 113.61133 * 334.64337 * 23 14 13 38 38 H 1.08994 * 113.53770 * 270.81500 * 24 23 14 39 39 H 1.09000 * 113.74158 * 139.94669 * 24 23 14 40 40 H 1.09001 * 113.61319 * 25.34797 * 25 14 13 41 41 H 1.09003 * 113.61841 * 156.16541 * 25 14 13 42 42 H 1.07999 * 120.08007 * 0.02562 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3438 -1.2370 6 6 3.8899 1.5561 -0.0008 7 6 4.5772 1.4958 -1.2004 8 6 5.9552 1.3742 -1.2100 9 6 6.6537 1.3116 -0.0219 10 6 5.9666 1.3719 1.1920 11 6 6.7079 1.3061 2.4681 12 8 6.1075 1.3592 3.5227 13 8 8.0498 1.1871 2.4623 14 6 8.7059 1.0611 3.7514 15 6 8.5631 2.2955 4.6040 16 1 8.0564 2.2385 5.5561 17 6 9.0791 3.4976 4.1686 18 7 9.6651 3.5747 2.9937 19 14 8.9460 5.0168 5.2473 20 1 7.6814 5.7324 4.9406 21 1 8.9514 4.6114 6.6760 22 1 10.0992 5.9142 4.9831 23 6 8.3634 -0.2423 4.4922 24 6 9.5613 -0.8773 3.7628 25 6 10.1498 0.5397 3.6594 26 6 4.5752 1.4899 1.1944 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5137 0.8900 32 1 4.0352 1.5439 -2.1333 33 1 6.4855 1.3281 -2.1498 34 1 7.7295 1.2163 -0.0308 35 1 9.7983 2.7726 2.4646 36 1 8.4941 -0.1779 5.5724 37 1 7.4014 -0.6674 4.2059 38 1 9.3021 -1.3139 2.7984 39 1 10.1493 -1.5497 4.3875 40 1 10.6279 0.7451 2.7016 41 1 10.7702 0.8196 4.5107 42 1 4.0372 1.5322 2.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:24 Heat of formation + Delta-G solvation = -108.189314 kcal Electronic energy + Delta-G solvation = -27454.558710 eV Core-core repulsion = 23493.010420 eV Total energy + Delta-G solvation = -3961.548290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.00225 -38.87646 -37.25818 -37.00547 -36.08212 -34.38411 -33.51148 -32.46204 -31.56265 -31.20799 -26.16574 -24.89685 -24.57708 -24.35509 -23.11475 -22.50238 -20.82842 -19.17495 -18.56098 -18.09972 -17.34638 -16.65990 -16.31724 -16.01648 -15.78276 -15.46894 -14.99505 -14.90059 -14.44489 -14.11887 -13.99513 -13.77446 -13.65984 -13.48600 -12.91087 -12.82916 -12.43653 -12.38231 -12.31721 -12.21854 -12.10088 -11.92678 -11.58326 -11.49210 -11.03453 -10.88045 -10.67016 -10.62061 -10.47122 -10.28194 -10.18738 -10.07940 -9.62314 -9.47791 -9.12982 -9.09270 -8.51619 -8.22409 -6.44004 -4.22865 -0.15752 0.63163 0.97831 2.67084 2.93270 3.40348 3.43151 3.53425 3.60940 3.64159 3.91837 3.95978 4.26322 4.43984 4.47406 4.73307 4.77529 4.82116 5.07915 5.14640 5.16814 5.25272 5.30986 5.33631 5.47286 5.50641 5.54060 5.61980 5.71470 5.78002 5.94073 6.11096 6.20906 6.23499 6.29551 6.58889 6.62179 6.64688 6.77468 7.00435 7.25181 7.56016 8.04260 8.35879 8.75173 8.86469 9.53143 10.93905 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.003425 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.096030 B = 8172.853571 C = 8651.291468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.610 4.610 3 S 2.498 3.502 4 O -0.930 6.930 5 O -0.937 6.937 6 C -0.675 4.675 7 C -0.007 4.007 8 C -0.151 4.151 9 C -0.011 4.011 10 C -0.125 4.125 11 C 0.505 3.495 12 O -0.491 6.491 13 O -0.349 6.349 14 C 0.212 3.788 15 C -0.594 4.594 16 H 0.061 0.939 17 C 0.032 3.968 18 N -0.891 5.891 19 Si 1.066 2.934 20 H -0.286 1.286 21 H -0.286 1.286 22 H -0.283 1.283 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.109 4.109 26 C 0.030 3.970 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.278 0.722 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.483 -10.288 -10.142 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.739 4.739 3 S 2.678 3.322 4 O -0.927 6.927 5 O -0.935 6.935 6 C -0.762 4.762 7 C -0.026 4.026 8 C -0.170 4.170 9 C -0.029 4.029 10 C -0.127 4.127 11 C 0.347 3.653 12 O -0.379 6.379 13 O -0.266 6.266 14 C 0.178 3.822 15 C -0.631 4.631 16 H 0.079 0.921 17 C -0.176 4.176 18 N -0.526 5.526 19 Si 0.894 3.106 20 H -0.213 1.213 21 H -0.212 1.212 22 H -0.209 1.209 23 C -0.182 4.182 24 C -0.186 4.186 25 C -0.146 4.146 26 C 0.011 3.989 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.737 -7.904 -9.744 17.180 hybrid contribution 0.392 -2.270 0.018 2.303 sum -11.345 -10.173 -9.725 18.077 Atomic orbital electron populations 1.21563 0.90262 1.05225 1.03764 1.30215 1.07088 1.24358 1.12274 1.05464 0.74222 0.77673 0.74852 1.93608 1.83132 1.71726 1.44226 1.93561 1.83350 1.71953 1.44588 1.30460 1.25769 1.20855 0.99095 1.21093 0.95045 0.90096 0.96404 1.21294 0.94125 1.02965 0.98613 1.21925 1.01434 0.88312 0.91238 1.19762 0.93481 1.06436 0.93060 1.20485 0.82470 0.74398 0.87938 1.90766 1.69903 1.44584 1.32643 1.86423 1.18846 1.81491 1.39829 1.20936 0.89017 0.93955 0.78295 1.22078 1.40641 0.94583 1.05847 0.92117 1.25867 0.92927 1.01416 0.97349 1.70688 1.38794 1.33095 1.10065 0.83584 0.76836 0.75171 0.74982 1.21259 1.21166 1.20867 1.23364 0.96686 0.97893 1.00278 1.22990 0.98687 0.97057 0.99884 1.22964 0.96553 0.93536 1.01594 1.21052 0.93336 0.87145 0.97398 0.89749 0.90642 0.90784 0.84612 0.84419 0.83842 0.84316 0.83512 0.90976 0.89840 0.92874 0.91293 0.92504 0.92312 0.89215 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.92 37.16 0.37 -0.56 16 2 C -0.61 -4.14 6.70 37.16 0.25 -3.89 16 3 S 2.50 28.23 5.15 -107.50 -0.55 27.68 16 4 O -0.93 -14.05 17.13 -57.54 -0.99 -15.04 16 5 O -0.94 -12.35 17.11 -57.54 -0.98 -13.33 16 6 C -0.68 -8.90 5.65 -39.64 -0.22 -9.12 16 7 C -0.01 -0.09 9.47 -39.49 -0.37 -0.46 16 8 C -0.15 -1.82 10.03 -39.64 -0.40 -2.22 16 9 C -0.01 -0.17 9.62 -39.17 -0.38 -0.54 16 10 C -0.13 -2.32 5.87 -104.98 -0.62 -2.93 16 11 C 0.50 11.66 7.28 34.61 0.25 11.91 16 12 O -0.49 -12.54 14.50 -19.24 -0.28 -12.81 16 13 O -0.35 -8.38 8.35 -40.53 -0.34 -8.71 16 14 C 0.21 5.19 0.11 -90.96 -0.01 5.18 16 15 C -0.59 -16.61 7.35 -34.44 -0.25 -16.86 16 16 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 17 C 0.03 0.91 5.40 -17.82 -0.10 0.82 16 18 N -0.89 -25.94 13.51 55.43 0.75 -25.19 16 19 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.14 -3.11 6.90 -25.83 -0.18 -3.29 16 24 C -0.15 -2.75 8.03 -25.83 -0.21 -2.96 16 25 C -0.11 -2.35 6.67 -25.92 -0.17 -2.53 16 26 C 0.03 0.49 9.02 -39.17 -0.35 0.13 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.14 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.14 1.24 7.56 -52.49 -0.40 0.85 16 33 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.15 2.20 7.61 -52.49 -0.40 1.81 16 35 H 0.28 7.96 5.76 -40.82 -0.24 7.73 16 36 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 37 H 0.05 1.14 7.32 -51.93 -0.38 0.76 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.26 7.77 -51.93 -0.40 0.86 16 41 H 0.09 1.95 8.09 -51.93 -0.42 1.53 16 42 H 0.15 2.55 7.17 -52.49 -0.38 2.17 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -36.59 367.24 -9.95 -46.55 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.62 Total: 2.19 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -2.39 Total: -27.32 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.75 Total: -25.19 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -2.59 Total: -49.90 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Atomic # 16 Polarization: 28.23 SS G_CDS: -0.55 Total: 27.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.59 -9.95 -46.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.643 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds