Wall clock time and date at job start Tue Mar 31 2020 21:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81401 * 109.46897 * 2 1 4 4 O 1.42093 * 110.54808 * 68.37429 * 3 2 1 5 5 O 1.42098 * 110.54169 * 291.62035 * 3 2 1 6 6 C 1.76205 * 104.44768 * 180.02562 * 3 2 1 7 7 C 1.38384 * 119.92907 * 89.99860 * 6 3 2 8 8 C 1.38343 * 120.30416 * 180.02562 * 7 6 3 9 9 C 1.37969 * 120.15092 * 0.02562 * 8 7 6 10 10 C 1.39609 * 119.84306 * 359.97438 * 9 8 7 11 11 C 1.47731 * 120.14474 * 180.02562 * 10 9 8 12 12 O 1.21470 * 119.99866 * 179.97438 * 11 10 9 13 13 O 1.34715 * 120.00162 * 359.97438 * 11 10 9 14 14 C 1.45193 * 116.99835 * 182.99112 * 13 11 10 15 15 C 1.50704 * 112.85392 * 294.88312 * 14 13 11 16 16 H 1.08003 * 120.00045 * 118.51818 * 15 14 13 17 17 C 1.37877 * 119.99995 * 298.52966 * 15 14 13 18 18 N 1.31517 * 119.99836 * 1.77840 * 17 15 14 19 19 Si 1.86800 * 120.00056 * 181.77920 * 17 15 14 20 20 H 1.48502 * 109.47006 * 269.99866 * 19 17 15 21 21 H 1.48504 * 109.47008 * 29.99900 * 19 17 15 22 22 H 1.48500 * 109.47305 * 149.99583 * 19 17 15 23 23 C 1.53784 * 113.61696 * 66.08425 * 14 13 11 24 24 C 1.53950 * 87.02157 * 89.22496 * 23 14 13 25 25 C 1.53781 * 113.61504 * 163.68825 * 14 13 11 26 26 C 1.37932 * 119.91917 * 270.27561 * 6 3 2 27 27 H 1.09004 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47518 * 300.00224 * 1 2 3 29 29 H 1.08998 * 109.47294 * 60.00228 * 1 2 3 30 30 H 1.08999 * 109.47035 * 239.99677 * 2 1 3 31 31 H 1.08997 * 109.46731 * 119.99258 * 2 1 3 32 32 H 1.07998 * 119.84293 * 0.02562 * 7 6 3 33 33 H 1.08003 * 119.92630 * 180.02562 * 8 7 6 34 34 H 1.08000 * 120.07799 * 179.97438 * 9 8 7 35 35 H 0.97001 * 119.99956 * 355.06001 * 18 17 15 36 36 H 1.08997 * 113.61473 * 203.74962 * 23 14 13 37 37 H 1.09005 * 113.61133 * 334.64337 * 23 14 13 38 38 H 1.08994 * 113.53770 * 270.81500 * 24 23 14 39 39 H 1.09000 * 113.74158 * 139.94669 * 24 23 14 40 40 H 1.09001 * 113.61319 * 25.34797 * 25 14 13 41 41 H 1.09003 * 113.61841 * 156.16541 * 25 14 13 42 42 H 1.07999 * 120.08007 * 0.02562 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3438 -1.2370 6 6 3.8899 1.5561 -0.0008 7 6 4.5772 1.4958 -1.2004 8 6 5.9552 1.3742 -1.2100 9 6 6.6537 1.3116 -0.0219 10 6 5.9666 1.3719 1.1920 11 6 6.7079 1.3061 2.4681 12 8 6.1075 1.3592 3.5227 13 8 8.0498 1.1871 2.4623 14 6 8.7059 1.0611 3.7514 15 6 8.5631 2.2955 4.6040 16 1 8.0564 2.2385 5.5561 17 6 9.0791 3.4976 4.1686 18 7 9.6651 3.5747 2.9937 19 14 8.9460 5.0168 5.2473 20 1 7.6814 5.7324 4.9406 21 1 8.9514 4.6114 6.6760 22 1 10.0992 5.9142 4.9831 23 6 8.3634 -0.2423 4.4922 24 6 9.5613 -0.8773 3.7628 25 6 10.1498 0.5397 3.6594 26 6 4.5752 1.4899 1.1944 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5137 0.8900 32 1 4.0352 1.5439 -2.1333 33 1 6.4855 1.3281 -2.1498 34 1 7.7295 1.2163 -0.0308 35 1 9.7983 2.7726 2.4646 36 1 8.4941 -0.1779 5.5724 37 1 7.4014 -0.6674 4.2059 38 1 9.3021 -1.3139 2.7984 39 1 10.1493 -1.5497 4.3875 40 1 10.6279 0.7451 2.7016 41 1 10.7702 0.8196 4.5107 42 1 4.0372 1.5322 2.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:23 Heat of formation + Delta-G solvation = -132.371132 kcal Electronic energy + Delta-G solvation = -27455.607312 eV Core-core repulsion = 23493.010420 eV Total energy + Delta-G solvation = -3962.596892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65615 -40.24865 -38.73619 -38.22919 -37.07292 -36.21177 -34.57250 -34.04782 -32.74692 -32.36689 -28.12702 -26.63346 -25.91033 -25.24257 -24.35908 -23.99820 -22.26528 -20.51713 -20.07826 -19.51910 -19.06938 -17.55979 -17.55723 -17.20565 -16.98324 -16.91884 -16.79767 -16.09987 -15.76973 -15.63000 -15.36598 -15.14922 -14.99377 -14.53139 -14.28329 -14.08339 -13.93247 -13.41460 -13.39481 -13.26577 -13.23872 -13.16661 -12.84005 -12.77858 -12.44720 -12.38454 -12.34397 -12.08458 -12.01490 -11.97334 -11.87269 -11.49705 -11.37614 -10.97108 -10.63087 -10.58971 -10.30491 -10.17675 -8.65184 -6.44033 -1.00541 -0.53855 -0.20696 1.44878 1.49464 1.51994 1.70265 1.75719 1.91741 2.42308 2.47968 2.88472 3.06086 3.13363 3.54597 3.64330 3.71043 3.77875 3.83101 3.89070 3.91747 3.97983 4.10071 4.21283 4.31506 4.40812 4.52495 4.63208 4.70459 4.73797 4.81543 4.85281 4.85729 4.95400 5.03347 5.05200 5.08696 5.14736 5.32728 5.48451 5.58507 5.65994 6.04029 6.14874 6.57313 7.01460 7.37297 8.73345 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.003425 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.096030 B = 8172.853571 C = 8651.291468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.577 4.577 3 S 2.496 3.504 4 O -0.980 6.980 5 O -0.957 6.957 6 C -0.673 4.673 7 C 0.006 3.994 8 C -0.136 4.136 9 C -0.020 4.020 10 C -0.160 4.160 11 C 0.495 3.505 12 O -0.532 6.532 13 O -0.351 6.351 14 C 0.185 3.815 15 C -0.610 4.610 16 H 0.036 0.964 17 C -0.010 4.010 18 N -0.912 5.912 19 Si 1.102 2.898 20 H -0.290 1.290 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.145 4.145 24 C -0.119 4.119 25 C -0.107 4.107 26 C 0.015 3.985 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.173 0.827 31 H 0.152 0.848 32 H 0.185 0.815 33 H 0.183 0.817 34 H 0.144 0.856 35 H 0.272 0.728 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.290 -12.183 -12.825 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.711 4.711 3 S 2.679 3.321 4 O -0.978 6.978 5 O -0.954 6.954 6 C -0.757 4.757 7 C -0.013 4.013 8 C -0.154 4.154 9 C -0.038 4.038 10 C -0.162 4.162 11 C 0.341 3.659 12 O -0.423 6.423 13 O -0.268 6.268 14 C 0.151 3.849 15 C -0.647 4.647 16 H 0.055 0.945 17 C -0.213 4.213 18 N -0.548 5.548 19 Si 0.925 3.075 20 H -0.216 1.216 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.183 4.183 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.004 4.004 27 H 0.129 0.871 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.191 0.809 31 H 0.170 0.830 32 H 0.202 0.798 33 H 0.201 0.799 34 H 0.162 0.838 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.494 -9.770 -12.434 20.154 hybrid contribution 0.460 -1.762 0.757 1.972 sum -12.034 -11.532 -11.677 20.351 Atomic orbital electron populations 1.21794 0.89403 1.06983 1.04114 1.30002 1.07524 1.18599 1.14965 1.05585 0.73139 0.79979 0.73389 1.93550 1.83281 1.74865 1.46056 1.93526 1.82963 1.74320 1.44636 1.30771 1.27030 1.19474 0.98420 1.21689 0.95165 0.87213 0.97203 1.21753 0.94392 1.00451 0.98771 1.22010 1.01524 0.88902 0.91387 1.19600 0.94112 1.10594 0.91905 1.21387 0.82109 0.72983 0.89459 1.90721 1.70299 1.46760 1.34566 1.86386 1.19693 1.81693 1.39010 1.21187 0.91176 0.93854 0.78694 1.22288 1.40198 0.96541 1.05703 0.94534 1.26966 0.92471 1.03954 0.97859 1.70771 1.40461 1.32846 1.10732 0.83135 0.76902 0.72858 0.74608 1.21625 1.19547 1.19581 1.23326 0.97903 0.96917 1.00121 1.22854 0.96349 0.95709 1.00672 1.22901 0.94735 0.95620 1.01202 1.20961 0.92610 0.88516 0.98331 0.87065 0.91197 0.89920 0.80890 0.82951 0.79767 0.79945 0.83803 0.91649 0.90224 0.93546 0.89755 0.89072 0.92508 0.89841 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.92 71.98 0.71 -0.76 16 2 C -0.58 -5.76 6.70 71.98 0.48 -5.28 16 3 S 2.50 53.12 5.15 -56.49 -0.29 52.83 16 4 O -0.98 -30.54 17.13 -127.65 -2.19 -32.72 16 5 O -0.96 -23.23 17.11 -127.65 -2.18 -25.41 16 6 C -0.67 -16.85 5.65 22.23 0.13 -16.73 16 7 C 0.01 0.11 9.47 22.33 0.21 0.32 16 8 C -0.14 -2.81 10.03 22.23 0.22 -2.59 16 9 C -0.02 -0.60 9.62 22.54 0.22 -0.39 16 10 C -0.16 -6.13 5.87 -20.10 -0.12 -6.25 16 11 C 0.50 24.15 7.28 70.33 0.51 24.66 16 12 O -0.53 -29.12 14.50 19.93 0.29 -28.83 16 13 O -0.35 -17.53 8.35 -56.25 -0.47 -18.00 16 14 C 0.18 9.38 0.11 -11.01 0.00 9.37 16 15 C -0.61 -35.59 7.35 25.60 0.19 -35.41 16 16 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 17 C -0.01 -0.55 5.40 84.65 0.46 -0.10 16 18 N -0.91 -54.51 13.51 21.45 0.29 -54.22 16 19 Si 1.10 52.85 29.90 68.60 2.05 54.90 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 C -0.14 -6.35 6.90 31.18 0.22 -6.14 16 24 C -0.12 -4.22 8.03 31.18 0.25 -3.97 16 25 C -0.11 -4.65 6.67 31.12 0.21 -4.44 16 26 C 0.01 0.50 9.02 22.54 0.20 0.71 16 27 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.17 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.19 2.19 7.56 -2.91 -0.02 2.17 16 33 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.14 4.33 7.61 -2.91 -0.02 4.31 16 35 H 0.27 16.08 5.76 -92.71 -0.53 15.55 16 36 H 0.08 3.48 8.09 -2.39 -0.02 3.46 16 37 H 0.05 2.05 7.32 -2.38 -0.02 2.04 16 38 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.06 2.45 7.77 -2.39 -0.02 2.43 16 41 H 0.08 3.68 8.09 -2.39 -0.02 3.66 16 42 H 0.14 4.95 7.17 -2.91 -0.02 4.93 16 Total: -1.00 -85.55 367.24 2.65 -82.90 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.26 Total: 15.54 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 3.89 Total: -46.97 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.29 Total: -54.22 kcal Atomic # 8 Polarization: -100.42 SS G_CDS: -4.55 Total: -104.97 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.29 Total: 52.83 kcal Total: -85.55 2.65 -82.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.471 kcal (2) G-P(sol) polarization free energy of solvation -85.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds