Wall clock time and date at job start Tue Mar 31 2020 21:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81404 * 109.47003 * 2 1 4 4 O 1.42099 * 110.54191 * 68.37900 * 3 2 1 5 5 O 1.42097 * 110.54282 * 291.62762 * 3 2 1 6 6 C 1.76203 * 104.44974 * 180.02562 * 3 2 1 7 7 C 1.38364 * 119.84828 * 90.00286 * 6 3 2 8 8 C 1.37944 * 120.14886 * 179.97438 * 7 6 3 9 9 C 1.39626 * 119.84960 * 359.97438 * 8 7 6 10 10 C 1.47722 * 120.14977 * 179.97438 * 9 8 7 11 11 O 1.21477 * 119.99907 * 0.02562 * 10 9 8 12 12 O 1.34710 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.45208 * 117.00081 * 175.64647 * 12 10 9 14 14 C 1.50708 * 112.90473 * 307.25284 * 13 12 10 15 15 H 1.07991 * 120.00104 * 114.23357 * 14 13 12 16 16 C 1.37877 * 119.99466 * 294.22631 * 14 13 12 17 17 N 1.31507 * 120.00310 * 7.12985 * 16 14 13 18 18 Si 1.86797 * 119.99541 * 187.13473 * 16 14 13 19 19 H 1.48500 * 109.47253 * 89.99946 * 18 16 14 20 20 H 1.48507 * 109.46871 * 210.00075 * 18 16 14 21 21 H 1.48503 * 109.47443 * 329.99686 * 18 16 14 22 22 C 1.53770 * 113.61594 * 175.99741 * 13 12 10 23 23 C 1.53783 * 87.17529 * 220.06071 * 22 13 12 24 24 C 1.53782 * 87.07837 * 25.39265 * 23 22 13 25 25 C 1.39627 * 119.69977 * 0.25632 * 9 8 7 26 26 C 1.37944 * 119.84730 * 359.50948 * 25 9 8 27 27 H 1.08995 * 109.47448 * 299.99968 * 1 2 3 28 28 H 1.09004 * 109.47312 * 60.00169 * 1 2 3 29 29 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47567 * 240.00347 * 2 1 3 31 31 H 1.08997 * 109.47694 * 119.99997 * 2 1 3 32 32 H 1.08002 * 119.92762 * 359.97438 * 7 6 3 33 33 H 1.08005 * 120.07112 * 179.97438 * 8 7 6 34 34 H 0.97006 * 120.00227 * 174.98702 * 17 16 14 35 35 H 1.09000 * 113.61633 * 105.47231 * 22 13 12 36 36 H 1.09000 * 113.61856 * 334.64928 * 22 13 12 37 37 H 1.09005 * 113.61455 * 139.93746 * 23 22 13 38 38 H 1.08997 * 113.61285 * 270.75911 * 23 22 13 39 39 H 1.08996 * 113.61760 * 89.11992 * 24 23 22 40 40 H 1.08999 * 113.61510 * 219.93833 * 24 23 22 41 41 H 1.07995 * 120.07502 * 179.71965 * 25 9 8 42 42 H 1.07998 * 119.92552 * 180.23397 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2369 6 6 3.8899 1.5561 -0.0008 7 6 4.5754 1.4961 -1.2012 8 6 5.9495 1.3759 -1.2090 9 6 6.6487 1.3154 -0.0019 10 6 8.1203 1.1861 -0.0026 11 8 8.7248 1.1327 -1.0549 12 8 8.7918 1.1275 1.1638 13 6 10.2244 0.9030 1.0891 14 6 10.5867 -0.3040 0.2626 15 1 11.1291 -0.1815 -0.6632 16 6 10.2259 -1.5647 0.6886 17 7 9.4471 -1.7060 1.7388 18 14 10.8433 -3.0719 -0.2260 19 1 12.1337 -3.5133 0.3616 20 1 9.8457 -4.1656 -0.1081 21 1 11.0413 -2.7349 -1.6587 22 6 10.9269 0.9469 2.4562 23 6 12.0701 1.7035 1.7593 24 6 11.0293 2.1639 0.7250 25 6 5.9502 1.3716 1.2057 26 6 4.5765 1.4967 1.1991 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.0334 1.5434 -2.1341 33 1 6.4833 1.3288 -2.1467 34 1 9.1340 -2.5876 1.9954 35 1 11.2173 -0.0351 2.8297 36 1 10.3983 1.5433 3.1999 37 1 12.4825 2.5174 2.3558 38 1 12.8384 1.0498 1.3464 39 1 10.5277 3.0934 0.9942 40 1 11.4027 2.1657 -0.2991 41 1 6.4845 1.3208 2.1429 42 1 4.0353 1.5442 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:28 Heat of formation + Delta-G solvation = -105.359576 kcal Electronic energy + Delta-G solvation = -27131.780739 eV Core-core repulsion = 23170.355155 eV Total energy + Delta-G solvation = -3961.425583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.76225 -38.63151 -37.25289 -36.95274 -36.09291 -34.30695 -33.49712 -32.39117 -31.46395 -31.02131 -26.35764 -25.00565 -24.61689 -24.11063 -22.96160 -22.54175 -20.29784 -19.11254 -18.66176 -18.05999 -17.28504 -16.57955 -16.24784 -16.17272 -15.34150 -14.99305 -14.86646 -14.62076 -14.40922 -14.38829 -13.90410 -13.78624 -13.53039 -13.50762 -12.95071 -12.85047 -12.63423 -12.24848 -12.23585 -12.12954 -11.91525 -11.68691 -11.31668 -11.17890 -11.08819 -11.05020 -10.96623 -10.66729 -10.49500 -10.33698 -10.05690 -9.88935 -9.50849 -9.25294 -9.02489 -8.89666 -8.64566 -8.61945 -6.21861 -4.32151 -0.15714 0.54267 1.35319 2.68494 3.01884 3.18657 3.26392 3.32224 3.64724 3.76088 3.91654 4.14075 4.27798 4.28027 4.44923 4.80246 4.83231 4.88070 5.07375 5.18073 5.34657 5.36429 5.38458 5.51853 5.54482 5.67995 5.69131 5.79576 5.90154 5.95159 6.09528 6.19708 6.33445 6.43689 6.54355 6.58217 6.80947 6.82942 7.03900 7.22977 7.46883 7.65840 7.77783 8.23542 8.72358 9.03791 9.36752 10.82421 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.003086 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.545355 B = 9071.004378 C = 9742.707575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.610 4.610 3 S 2.498 3.502 4 O -0.937 6.937 5 O -0.938 6.938 6 C -0.650 4.650 7 C -0.039 4.039 8 C -0.089 4.089 9 C -0.046 4.046 10 C 0.500 3.500 11 O -0.491 6.491 12 O -0.342 6.342 13 C 0.238 3.762 14 C -0.510 4.510 15 H 0.070 0.930 16 C 0.075 3.925 17 N -0.863 5.863 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.160 4.160 25 C -0.085 4.085 26 C -0.039 4.039 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.264 0.736 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.150 0.850 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.078 2.830 -0.583 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.739 4.739 3 S 2.679 3.321 4 O -0.934 6.934 5 O -0.935 6.935 6 C -0.737 4.737 7 C -0.058 4.058 8 C -0.108 4.108 9 C -0.047 4.047 10 C 0.342 3.658 11 O -0.380 6.380 12 O -0.258 6.258 13 C 0.205 3.795 14 C -0.547 4.547 15 H 0.088 0.912 16 C -0.131 4.131 17 N -0.500 5.500 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.144 4.144 23 C -0.168 4.168 24 C -0.198 4.198 25 C -0.104 4.104 26 C -0.058 4.058 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.168 0.832 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.327 3.452 -0.702 14.754 hybrid contribution 1.026 -1.734 -0.522 2.081 sum -13.301 1.718 -1.224 13.467 Atomic orbital electron populations 1.21559 0.90354 1.05231 1.03634 1.30205 1.06947 1.24300 1.12460 1.05391 0.74378 0.77635 0.74728 1.93569 1.83411 1.71984 1.44432 1.93565 1.83447 1.72011 1.44491 1.30561 1.25435 1.18045 0.99676 1.20819 0.94381 0.94024 0.96571 1.21431 0.93772 0.97274 0.98325 1.20146 0.92696 0.97496 0.94364 1.20519 0.86935 0.74581 0.83801 1.90739 1.69734 1.44402 1.33119 1.86507 1.27482 1.79730 1.32090 1.21321 0.72071 0.91882 0.94256 1.20971 1.37470 0.88991 1.07316 0.91213 1.25069 0.94403 0.99192 0.94461 1.70019 1.31544 1.23745 1.24659 0.86558 0.78822 0.82013 0.80539 1.20209 1.21115 1.19550 1.22885 0.94911 1.00154 0.96400 1.22517 0.96656 0.99265 0.98404 1.23574 0.98554 0.98482 0.99179 1.21710 0.93831 0.95975 0.98851 1.20915 0.94727 0.93632 0.96531 0.90765 0.90809 0.89758 0.84494 0.84411 0.83746 0.83705 0.92641 0.90543 0.92212 0.92878 0.90183 0.92044 0.91926 0.83213 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.92 37.15 0.37 -0.52 16 2 C -0.61 -4.09 6.70 37.15 0.25 -3.84 16 3 S 2.50 26.03 5.15 -107.50 -0.55 25.48 16 4 O -0.94 -12.18 17.11 -57.54 -0.98 -13.16 16 5 O -0.94 -12.11 17.11 -57.54 -0.98 -13.09 16 6 C -0.65 -8.21 5.66 -39.49 -0.22 -8.43 16 7 C -0.04 -0.52 9.45 -39.64 -0.37 -0.89 16 8 C -0.09 -1.43 9.60 -39.17 -0.38 -1.81 16 9 C -0.05 -0.85 5.87 -104.99 -0.62 -1.47 16 10 C 0.50 11.53 7.49 34.61 0.26 11.79 16 11 O -0.49 -12.38 14.80 -19.25 -0.28 -12.66 16 12 O -0.34 -8.29 9.19 -40.52 -0.37 -8.66 16 13 C 0.24 5.81 0.49 -90.87 -0.04 5.76 16 14 C -0.51 -13.67 6.42 -34.44 -0.22 -13.89 16 15 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 16 C 0.07 1.98 5.20 -17.82 -0.09 1.89 16 17 N -0.86 -23.32 12.58 55.43 0.70 -22.62 16 18 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.11 -2.34 7.19 -25.92 -0.19 -2.52 16 23 C -0.13 -2.55 7.81 -25.92 -0.20 -2.75 16 24 C -0.16 -3.43 7.22 -25.82 -0.19 -3.62 16 25 C -0.08 -1.38 9.62 -39.17 -0.38 -1.76 16 26 C -0.04 -0.53 9.45 -39.64 -0.37 -0.90 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.14 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.14 1.52 7.56 -52.49 -0.40 1.12 16 33 H 0.15 2.25 7.65 -52.48 -0.40 1.85 16 34 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 35 H 0.08 1.82 7.64 -51.93 -0.40 1.42 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 41 H 0.15 2.42 7.61 -52.49 -0.40 2.02 16 42 H 0.14 1.57 7.56 -52.49 -0.40 1.18 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -34.01 370.43 -10.08 -44.10 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.76 Total: 2.24 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.40 Total: -22.98 kcal Atomic # 7 Polarization: -23.32 SS G_CDS: 0.70 Total: -22.62 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -2.63 Total: -47.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 26.03 SS G_CDS: -0.55 Total: 25.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.01 -10.08 -44.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.262 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds