Wall clock time and date at job start Tue Mar 31 2020 21:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81404 * 109.47003 * 2 1 4 4 O 1.42099 * 110.54191 * 68.37900 * 3 2 1 5 5 O 1.42097 * 110.54282 * 291.62762 * 3 2 1 6 6 C 1.76203 * 104.44974 * 180.02562 * 3 2 1 7 7 C 1.38364 * 119.84828 * 90.00286 * 6 3 2 8 8 C 1.37944 * 120.14886 * 179.97438 * 7 6 3 9 9 C 1.39626 * 119.84960 * 359.97438 * 8 7 6 10 10 C 1.47722 * 120.14977 * 179.97438 * 9 8 7 11 11 O 1.21477 * 119.99907 * 0.02562 * 10 9 8 12 12 O 1.34710 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.45208 * 117.00081 * 175.64647 * 12 10 9 14 14 C 1.50708 * 112.90473 * 307.25284 * 13 12 10 15 15 H 1.07991 * 120.00104 * 114.23357 * 14 13 12 16 16 C 1.37877 * 119.99466 * 294.22631 * 14 13 12 17 17 N 1.31507 * 120.00310 * 7.12985 * 16 14 13 18 18 Si 1.86797 * 119.99541 * 187.13473 * 16 14 13 19 19 H 1.48500 * 109.47253 * 89.99946 * 18 16 14 20 20 H 1.48507 * 109.46871 * 210.00075 * 18 16 14 21 21 H 1.48503 * 109.47443 * 329.99686 * 18 16 14 22 22 C 1.53770 * 113.61594 * 175.99741 * 13 12 10 23 23 C 1.53783 * 87.17529 * 220.06071 * 22 13 12 24 24 C 1.53782 * 87.07837 * 25.39265 * 23 22 13 25 25 C 1.39627 * 119.69977 * 0.25632 * 9 8 7 26 26 C 1.37944 * 119.84730 * 359.50948 * 25 9 8 27 27 H 1.08995 * 109.47448 * 299.99968 * 1 2 3 28 28 H 1.09004 * 109.47312 * 60.00169 * 1 2 3 29 29 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47567 * 240.00347 * 2 1 3 31 31 H 1.08997 * 109.47694 * 119.99997 * 2 1 3 32 32 H 1.08002 * 119.92762 * 359.97438 * 7 6 3 33 33 H 1.08005 * 120.07112 * 179.97438 * 8 7 6 34 34 H 0.97006 * 120.00227 * 174.98702 * 17 16 14 35 35 H 1.09000 * 113.61633 * 105.47231 * 22 13 12 36 36 H 1.09000 * 113.61856 * 334.64928 * 22 13 12 37 37 H 1.09005 * 113.61455 * 139.93746 * 23 22 13 38 38 H 1.08997 * 113.61285 * 270.75911 * 23 22 13 39 39 H 1.08996 * 113.61760 * 89.11992 * 24 23 22 40 40 H 1.08999 * 113.61510 * 219.93833 * 24 23 22 41 41 H 1.07995 * 120.07502 * 179.71965 * 25 9 8 42 42 H 1.07998 * 119.92552 * 180.23397 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2369 6 6 3.8899 1.5561 -0.0008 7 6 4.5754 1.4961 -1.2012 8 6 5.9495 1.3759 -1.2090 9 6 6.6487 1.3154 -0.0019 10 6 8.1203 1.1861 -0.0026 11 8 8.7248 1.1327 -1.0549 12 8 8.7918 1.1275 1.1638 13 6 10.2244 0.9030 1.0891 14 6 10.5867 -0.3040 0.2626 15 1 11.1291 -0.1815 -0.6632 16 6 10.2259 -1.5647 0.6886 17 7 9.4471 -1.7060 1.7388 18 14 10.8433 -3.0719 -0.2260 19 1 12.1337 -3.5133 0.3616 20 1 9.8457 -4.1656 -0.1081 21 1 11.0413 -2.7349 -1.6587 22 6 10.9269 0.9469 2.4562 23 6 12.0701 1.7035 1.7593 24 6 11.0293 2.1639 0.7250 25 6 5.9502 1.3716 1.2057 26 6 4.5765 1.4967 1.1991 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.0334 1.5434 -2.1341 33 1 6.4833 1.3288 -2.1467 34 1 9.1340 -2.5876 1.9954 35 1 11.2173 -0.0351 2.8297 36 1 10.3983 1.5433 3.1999 37 1 12.4825 2.5174 2.3558 38 1 12.8384 1.0498 1.3464 39 1 10.5277 3.0934 0.9942 40 1 11.4027 2.1657 -0.2991 41 1 6.4845 1.3208 2.1429 42 1 4.0353 1.5442 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:27 Heat of formation + Delta-G solvation = -126.582795 kcal Electronic energy + Delta-G solvation = -27132.701046 eV Core-core repulsion = 23170.355155 eV Total energy + Delta-G solvation = -3962.345891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37006 -40.08034 -38.65847 -38.17216 -37.01283 -36.13303 -34.40712 -33.99612 -32.72670 -32.20174 -28.28151 -26.44180 -26.29158 -24.93871 -24.36310 -23.81703 -21.82546 -20.51215 -20.02325 -19.21985 -18.85042 -17.94810 -17.28853 -17.21016 -16.96151 -16.88928 -16.22850 -16.06556 -15.79076 -15.61943 -15.19803 -15.07479 -14.64307 -14.45386 -14.26333 -13.90353 -13.84703 -13.55573 -13.34259 -13.17570 -13.08038 -13.06893 -12.95551 -12.82673 -12.35632 -12.33400 -12.24729 -12.16061 -12.06549 -11.89882 -11.67905 -11.45239 -11.26438 -10.83511 -10.58107 -10.53924 -10.42770 -10.19051 -8.23663 -6.39594 -0.99818 -0.67265 0.17614 1.32044 1.34605 1.44579 1.55063 1.84606 2.14059 2.33529 2.57131 2.93849 3.06793 3.11883 3.63426 3.76277 3.80661 3.83614 3.94667 3.98542 4.09191 4.17788 4.26084 4.34267 4.45087 4.48887 4.52106 4.78601 4.81824 4.83239 4.88987 4.90592 4.91415 4.96722 5.12104 5.18811 5.22777 5.34783 5.41441 5.60744 5.62942 5.73817 5.88800 6.35481 6.64175 7.19658 7.33653 8.80051 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.003086 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.545355 B = 9071.004378 C = 9742.707575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.584 4.584 3 S 2.507 3.493 4 O -0.964 6.964 5 O -0.964 6.964 6 C -0.641 4.641 7 C -0.034 4.034 8 C -0.096 4.096 9 C -0.082 4.082 10 C 0.493 3.507 11 O -0.528 6.528 12 O -0.351 6.351 13 C 0.212 3.788 14 C -0.526 4.526 15 H 0.047 0.953 16 C 0.036 3.964 17 N -0.884 5.884 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.280 1.280 22 C -0.103 4.103 23 C -0.111 4.111 24 C -0.156 4.156 25 C -0.091 4.091 26 C -0.035 4.035 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.141 0.859 34 H 0.266 0.734 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.143 0.857 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.233 2.191 -0.238 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.717 4.717 3 S 2.689 3.311 4 O -0.961 6.961 5 O -0.961 6.961 6 C -0.725 4.725 7 C -0.052 4.052 8 C -0.115 4.115 9 C -0.083 4.083 10 C 0.337 3.663 11 O -0.419 6.419 12 O -0.267 6.267 13 C 0.179 3.821 14 C -0.563 4.563 15 H 0.065 0.935 16 C -0.167 4.167 17 N -0.521 5.521 18 Si 0.771 3.229 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.194 4.194 25 C -0.110 4.110 26 C -0.054 4.054 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.193 0.807 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.161 0.839 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.433 2.857 -0.342 16.683 hybrid contribution 1.494 -1.529 -0.655 2.236 sum -14.939 1.328 -0.997 15.031 Atomic orbital electron populations 1.21776 0.89419 1.06779 1.04218 1.30039 1.07511 1.19349 1.14823 1.05351 0.72814 0.79479 0.73483 1.93535 1.82986 1.74305 1.45277 1.93532 1.83004 1.74301 1.45273 1.31112 1.27296 1.15131 0.98983 1.21144 0.93106 0.92657 0.98287 1.21516 0.95080 0.97576 0.97282 1.19997 0.90198 1.01683 0.96460 1.21293 0.88779 0.73243 0.82971 1.90694 1.70946 1.46395 1.33877 1.86477 1.27520 1.79886 1.32827 1.21572 0.72476 0.92493 0.95593 1.21019 1.37790 0.90605 1.06881 0.93500 1.25653 0.94513 1.01285 0.95277 1.70090 1.32212 1.24229 1.25531 0.85760 0.78945 0.79313 0.78906 1.18935 1.20340 1.20505 1.22854 0.95858 0.99636 0.95749 1.22443 0.95449 0.99677 0.97264 1.23529 0.98855 0.97928 0.99077 1.21716 0.95156 0.96453 0.97701 1.21207 0.93467 0.92449 0.98245 0.90400 0.90370 0.87574 0.82190 0.82258 0.80726 0.84083 0.92509 0.92772 0.90881 0.88989 0.90563 0.90732 0.93332 0.83874 0.80939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.92 71.98 0.71 -0.56 16 2 C -0.58 -5.26 6.70 71.98 0.48 -4.77 16 3 S 2.51 45.30 5.15 -56.49 -0.29 45.00 16 4 O -0.96 -22.85 17.11 -127.65 -2.18 -25.03 16 5 O -0.96 -22.61 17.11 -127.65 -2.18 -24.80 16 6 C -0.64 -14.84 5.66 22.33 0.13 -14.72 16 7 C -0.03 -0.84 9.45 22.23 0.21 -0.63 16 8 C -0.10 -3.11 9.60 22.54 0.22 -2.89 16 9 C -0.08 -3.17 5.87 -20.10 -0.12 -3.29 16 10 C 0.49 23.83 7.49 70.33 0.53 24.36 16 11 O -0.53 -28.12 14.80 19.91 0.29 -27.83 16 12 O -0.35 -17.67 9.19 -56.20 -0.52 -18.18 16 13 C 0.21 10.65 0.49 -10.95 -0.01 10.65 16 14 C -0.53 -29.21 6.42 25.60 0.16 -29.05 16 15 H 0.05 2.74 7.82 -2.92 -0.02 2.72 16 16 C 0.04 1.97 5.20 84.66 0.44 2.41 16 17 N -0.88 -48.70 12.58 21.45 0.27 -48.43 16 18 Si 0.95 43.39 29.55 68.60 2.03 45.42 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 C -0.10 -4.59 7.19 31.12 0.22 -4.36 16 23 C -0.11 -4.23 7.81 31.12 0.24 -3.99 16 24 C -0.16 -6.78 7.22 31.18 0.23 -6.56 16 25 C -0.09 -3.01 9.62 22.54 0.22 -2.79 16 26 C -0.04 -0.90 9.45 22.23 0.21 -0.69 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.18 3.23 7.56 -2.91 -0.02 3.21 16 33 H 0.14 4.57 7.65 -2.91 -0.02 4.55 16 34 H 0.27 13.88 8.32 -92.70 -0.77 13.11 16 35 H 0.05 2.62 7.64 -2.39 -0.02 2.60 16 36 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 38 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 41 H 0.14 4.78 7.61 -2.91 -0.02 4.76 16 42 H 0.17 3.35 7.56 -2.91 -0.02 3.32 16 Total: -1.00 -76.55 370.43 2.32 -74.23 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.03 Total: 16.49 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.88 Total: -36.88 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.27 Total: -48.43 kcal Atomic # 8 Polarization: -91.25 SS G_CDS: -4.59 Total: -95.83 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 45.30 SS G_CDS: -0.29 Total: 45.00 kcal Total: -76.55 2.32 -74.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.353 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds