Wall clock time and date at job start Tue Mar 31 2020 20:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 114.00041 * 2 1 4 4 C 1.52996 * 109.46823 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47169 * 65.00175 * 4 3 2 6 6 C 1.36940 * 119.99586 * 269.99513 * 5 4 3 7 7 H 1.08001 * 119.99697 * 145.95085 * 6 5 4 8 8 C 1.38810 * 120.00257 * 325.94565 * 6 5 4 9 9 N 1.31620 * 119.99886 * 337.07215 * 8 6 5 10 10 Si 1.86796 * 119.99737 * 157.06962 * 8 6 5 11 11 H 1.48501 * 109.47320 * 90.00662 * 10 8 6 12 12 H 1.48510 * 109.47141 * 209.99987 * 10 8 6 13 13 H 1.48497 * 109.47428 * 330.00130 * 10 8 6 14 14 C 1.46496 * 120.00068 * 89.99430 * 5 4 3 15 15 N 1.46507 * 109.46956 * 90.46406 * 14 5 4 16 16 N 1.39741 * 119.95828 * 75.24836 * 15 14 5 17 17 N 1.28352 * 122.94243 * 180.02562 * 16 15 14 18 18 C 1.35600 * 121.97567 * 359.97438 * 17 16 15 19 19 C 1.39855 * 121.33385 * 180.02562 * 18 17 16 20 20 Cl 1.73598 * 120.14268 * 359.95525 * 19 18 17 21 21 C 1.37759 * 119.71111 * 179.97438 * 19 18 17 22 22 C 1.38856 * 120.79334 * 359.97438 * 21 19 18 23 23 C 1.37762 * 120.55184 * 359.73612 * 22 21 19 24 24 C 1.39374 * 119.59744 * 0.53551 * 23 22 21 25 25 C 1.35402 * 119.95605 * 255.28906 * 15 14 5 26 26 O 1.21737 * 121.31938 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47153 * 300.00329 * 1 2 3 29 29 H 1.08996 * 109.46808 * 60.00047 * 1 2 3 30 30 H 1.09000 * 109.47048 * 59.99857 * 3 2 1 31 31 H 1.08991 * 109.46514 * 299.99743 * 3 2 1 32 32 H 1.08994 * 109.47526 * 304.99833 * 4 3 2 33 33 H 1.09000 * 109.46697 * 184.99597 * 4 3 2 34 34 H 0.96997 * 119.99575 * 185.04300 * 9 8 6 35 35 H 1.08999 * 109.47252 * 330.46482 * 14 5 4 36 36 H 1.09002 * 109.47243 * 210.46087 * 14 5 4 37 37 H 1.08000 * 119.60271 * 179.97438 * 21 19 18 38 38 H 1.07992 * 119.72213 * 180.02562 * 22 21 19 39 39 H 1.08004 * 120.19701 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0978 -0.7975 -1.3344 7 1 3.8775 -1.3033 -2.2629 8 6 4.5038 -1.5275 -0.2257 9 7 5.1899 -0.9418 0.7326 10 14 4.0762 -3.3411 -0.0940 11 1 5.1566 -4.1506 -0.7126 12 1 3.9358 -3.7140 1.3366 13 1 2.7965 -3.6007 -0.8011 14 6 4.2882 1.3997 -2.4130 15 7 5.7080 1.7604 -2.3885 16 7 6.6746 0.8135 -2.7372 17 7 7.9328 1.0672 -2.7352 18 6 8.4192 2.2854 -2.3914 19 6 9.7930 2.5473 -2.3944 20 17 10.9168 1.3024 -2.8428 21 6 10.2506 3.7973 -2.0397 22 6 9.3636 4.8030 -1.6790 23 6 8.0058 4.5706 -1.6742 24 6 7.5216 3.3114 -2.0241 25 6 6.0818 3.0107 -2.0273 26 8 5.2587 3.8530 -1.7190 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1765 0.0901 34 1 5.5365 -1.4665 1.4712 35 1 3.6826 2.3055 -2.3820 36 1 4.0694 0.8475 -3.3269 37 1 11.3118 3.9975 -2.0423 38 1 9.7412 5.7767 -1.4043 39 1 7.3211 5.3568 -1.3922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819885657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:58 Heat of formation + Delta-G solvation = 20.999720 kcal Electronic energy + Delta-G solvation = -27346.235987 eV Core-core repulsion = 23316.998455 eV Total energy + Delta-G solvation = -4029.237532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25670 -39.82283 -38.88554 -38.68262 -37.53227 -37.16597 -34.90830 -33.19462 -32.34605 -31.90798 -30.56507 -28.02273 -27.14220 -26.36220 -25.62501 -24.50660 -23.33839 -22.35062 -20.64960 -19.96649 -18.92519 -18.18172 -17.57773 -17.20285 -16.92140 -16.70530 -16.49327 -16.29346 -16.09235 -15.66653 -15.61953 -15.48057 -15.14292 -14.86962 -14.05214 -13.75873 -13.70509 -13.51995 -13.43831 -13.07762 -12.93054 -12.77093 -12.69873 -12.60087 -12.38410 -12.24521 -12.08800 -12.01581 -11.71211 -11.62180 -11.17553 -11.06088 -10.60613 -10.37677 -10.24504 -9.42999 -8.86035 -7.92814 -5.44925 -1.06227 -0.51576 0.75717 0.93304 1.10551 1.48040 1.50533 1.51832 1.60649 2.47986 2.58092 2.65875 2.91666 3.13634 3.30910 3.43950 3.55856 3.68125 4.01426 4.19276 4.24565 4.29153 4.36151 4.45150 4.50040 4.61378 4.65286 4.69678 4.76220 4.77545 4.85443 4.89133 5.00114 5.08264 5.25152 5.48212 5.61250 5.71384 6.31017 6.48791 6.59852 7.01319 7.33301 7.67577 8.15080 9.08549 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.004040 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.921366 B = 6928.330032 C = 8319.457149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.063 3.937 4 C 0.134 3.866 5 N -0.552 5.552 6 C -0.243 4.243 7 H 0.069 0.931 8 C -0.015 4.015 9 N -0.914 5.914 10 Si 0.958 3.042 11 H -0.287 1.287 12 H -0.296 1.296 13 H -0.268 1.268 14 C 0.337 3.663 15 N -0.445 5.445 16 N 0.094 4.906 17 N -0.241 5.241 18 C 0.053 3.947 19 C -0.016 4.016 20 Cl -0.038 7.038 21 C -0.061 4.061 22 C -0.077 4.077 23 C -0.053 4.053 24 C -0.174 4.174 25 C 0.512 3.488 26 O -0.544 6.544 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.251 0.749 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.190 0.810 38 H 0.198 0.802 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 12.472 -4.842 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.016 4.016 4 C 0.009 3.991 5 N -0.270 5.270 6 C -0.374 4.374 7 H 0.086 0.914 8 C -0.213 4.213 9 N -0.557 5.557 10 Si 0.787 3.213 11 H -0.214 1.214 12 H -0.223 1.223 13 H -0.193 1.193 14 C 0.130 3.870 15 N -0.277 5.277 16 N 0.108 4.892 17 N -0.131 5.131 18 C -0.059 4.059 19 C -0.048 4.048 20 Cl -0.009 7.009 21 C -0.081 4.081 22 C -0.097 4.097 23 C -0.072 4.072 24 C -0.185 4.185 25 C 0.303 3.697 26 O -0.420 6.420 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.207 0.793 38 H 0.215 0.785 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.108 11.443 -4.870 13.855 hybrid contribution -0.458 -0.093 0.735 0.871 sum 5.650 11.350 -4.135 13.336 Atomic orbital electron populations 1.22838 0.81316 1.02788 1.00143 1.88136 1.19783 1.28096 1.95210 1.23019 0.95306 0.84370 0.98891 1.21111 0.90777 0.95820 0.91424 1.44769 1.69498 1.03095 1.09603 1.19118 1.38906 0.81559 0.97770 0.91372 1.25654 0.96517 1.01363 0.97799 1.69992 1.35736 1.36430 1.13576 0.85426 0.78452 0.81067 0.76348 1.21360 1.22285 1.19297 1.22351 0.75813 0.95600 0.93219 1.54165 1.10737 1.08377 1.54387 1.80348 0.93664 1.13644 1.01562 1.74026 1.05011 1.17982 1.16089 1.19666 0.94841 0.90251 1.01153 1.20856 0.87266 0.92901 1.03780 1.98388 1.58768 1.53092 1.90643 1.21791 1.03618 0.88724 0.93955 1.21825 0.90476 1.01314 0.96090 1.21470 0.97917 0.93747 0.94109 1.20780 0.92269 0.97860 1.07627 1.19286 0.89691 0.83120 0.77643 1.90762 1.54499 1.47330 1.49444 0.89730 0.93635 0.93618 0.93272 0.93786 0.90363 0.94475 0.93947 0.88286 0.88584 0.79309 0.78484 0.82564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.39 -16.59 10.18 -148.98 -1.52 -18.11 16 3 C 0.06 2.48 6.28 71.98 0.45 2.93 16 4 C 0.13 6.39 5.72 86.38 0.49 6.88 16 5 N -0.55 -26.71 2.67 -713.75 -1.91 -28.61 16 6 C -0.24 -12.85 8.99 84.03 0.76 -12.10 16 7 H 0.07 3.59 7.93 -2.91 -0.02 3.57 16 8 C -0.02 -0.83 4.95 84.86 0.42 -0.41 16 9 N -0.91 -53.33 11.31 21.65 0.24 -53.09 16 10 Si 0.96 45.71 29.61 68.60 2.03 47.74 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.34 14.23 6.47 170.96 1.11 15.34 16 15 N -0.45 -19.36 3.76 -475.83 -1.79 -21.15 16 16 N 0.09 4.21 12.77 37.02 0.47 4.68 16 17 N -0.24 -9.96 11.09 -51.77 -0.57 -10.53 16 18 C 0.05 1.85 6.71 39.68 0.27 2.12 16 19 C -0.02 -0.42 6.35 22.55 0.14 -0.28 16 20 Cl -0.04 -0.99 28.53 -2.72 -0.08 -1.07 16 21 C -0.06 -1.03 9.79 22.30 0.22 -0.82 16 22 C -0.08 -1.16 10.02 22.31 0.22 -0.94 16 23 C -0.05 -1.28 9.67 22.43 0.22 -1.06 16 24 C -0.17 -6.03 5.90 -19.96 -0.12 -6.15 16 25 C 0.51 21.10 7.76 86.47 0.67 21.77 16 26 O -0.54 -23.23 16.14 -4.47 -0.07 -23.30 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 4.34 5.32 -2.39 -0.01 4.33 16 33 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 34 H 0.25 14.40 8.32 -92.71 -0.77 13.63 16 35 H 0.10 3.91 7.04 -2.39 -0.02 3.89 16 36 H 0.10 3.77 8.04 -2.39 -0.02 3.75 16 37 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.16 3.44 7.81 -2.91 -0.02 3.42 16 Total: -1.00 -71.33 356.36 4.00 -67.33 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.09 Total: 6.80 kcal Atomic # 6 Polarization: 23.22 SS G_CDS: 6.10 Total: 29.31 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -3.55 Total: -108.70 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.59 Total: -41.41 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -71.33 4.00 -67.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819885657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.328 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds